View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_260 (Length: 287)

Name: NF10145A_low_260
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_260
NF10145A_low_260
[»] chr7 (1 HSPs)
chr7 (30-278)||(41727052-41727300)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 41727300 - 41727052
Alignment:
Q  30 cattgcgggagtagaggggaagggatatttgatttcaatatgtcatcaacatcatattcatttgttttcaatgtaacacataatcgtctctgaatgaaag 129  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41727300 cattgtgggagtagaggggaatggatatttgatttcaatatgtcatcaacatcatattcatttgttttcaatgtaacacataatcgtctctgattgaaag 41727201  T
Q  130 tacttaatcaactggtttactgcataaatagagttgagatgtttcgtgaattcatcaagatggataaagcttcacgtaaaatggctggtgaaatttctga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41727200 tacttaatcaactggtttactgcataaatagagttgagatgtttcgtgaattcatcaagatggataaagcttcacgtaaaatggctggtgaaatttctga 41727101  T
Q  230 acctggttcacgagccattgagattgtagtacgtcggggtcatattgtt 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41727100 acctggttcacgagccattgagattgtagtacgtcggggtcatattgtt 41727052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University