View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_261 (Length: 286)

Name: NF10145A_low_261
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_261
NF10145A_low_261
[»] chr3 (5 HSPs)
chr3 (14-271)||(11897148-11897405)
chr3 (13-271)||(26432588-26432846)
chr3 (13-170)||(23424497-23424654)
chr3 (13-128)||(53608336-53608451)
chr3 (13-167)||(38647179-38647333)
[»] chr8 (4 HSPs)
chr8 (14-271)||(23132475-23132732)
chr8 (67-170)||(26587277-26587380)
chr8 (108-266)||(14760016-14760174)
chr8 (13-104)||(38348466-38348557)
[»] chr2 (11 HSPs)
chr2 (14-271)||(14653570-14653827)
chr2 (18-167)||(26791322-26791471)
chr2 (13-164)||(40328174-40328325)
chr2 (13-164)||(35135219-35135370)
chr2 (70-179)||(16322502-16322611)
chr2 (70-167)||(573245-573342)
chr2 (13-164)||(3779048-3779199)
chr2 (22-167)||(177504-177649)
chr2 (116-167)||(35062956-35063007)
chr2 (70-152)||(19265469-19265551)
chr2 (86-172)||(42403209-42403295)
[»] chr1 (4 HSPs)
chr1 (14-271)||(20284849-20285106)
chr1 (12-179)||(50236550-50236717)
chr1 (12-167)||(50451893-50452048)
chr1 (70-128)||(23465403-23465461)
[»] chr4 (6 HSPs)
chr4 (13-164)||(54477407-54477558)
chr4 (60-170)||(14307826-14307936)
chr4 (60-170)||(14291777-14291887)
chr4 (70-167)||(3881771-3881868)
chr4 (18-170)||(46784469-46784621)
chr4 (13-104)||(33803974-33804065)
[»] scaffold0036 (1 HSPs)
scaffold0036 (77-167)||(75967-76057)
[»] chr5 (2 HSPs)
chr5 (61-167)||(32874457-32874563)
chr5 (13-167)||(7817131-7817285)
[»] chr6 (4 HSPs)
chr6 (13-170)||(24893833-24893990)
chr6 (86-170)||(24990660-24990744)
chr6 (70-176)||(13599639-13599745)
chr6 (70-127)||(35233542-35233599)
[»] chr7 (3 HSPs)
chr7 (70-173)||(16769956-16770059)
chr7 (31-164)||(1353794-1353927)
chr7 (22-167)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 11897148 - 11897405
Alignment:
Q  14 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 11897247  T
Q  114 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  11897248 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcaccc 11897347  T
Q  214 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897348 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 11897405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 26432846 - 26432588
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 112  Q
    |||||||||||||| |||||||||||||| ||  ||||  | |  ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |    
T  26432846 gacatcaccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtc 26432747  T
Q  113 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacc 212  Q
    |||||||||||||||| |||||||||||||| |||||| |||||||||||||||| || |||||||| ||||| || ||| ||||||||||||||| |||    
T  26432746 tccgacaaggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 26432647  T
Q  213 catccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 271  Q
     || |||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  26432646 gattcaaatcactcctacggggccgcatttatcccacctcctttttgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 23424497 - 23424654
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgt-agcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggc 111  Q
    ||||||||||||||||||||||| ||||| || | || ||||   || ||| ||| | ||||| || |||||  |||| |||||||||||  | |||||     
T  23424497 gacatcaccatcaagctcatcatacattgtgtcacctcctccacatt-ctcaatattatggaaaggtaacaaaatgccccctttcaagcccacacatggt 23424595  T
Q  112 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 170  Q
    ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  23424596 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 53608451 - 53608336
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 112  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  | |||||| ||||||||||| |||||  ||||  |||||| |||||| ||||| |    
T  53608451 gacatcaccatcaagctcatcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaaaatgccttctttcaggccttcacatggtc 53608352  T
Q  113 tccgacaaggtgatcc 128  Q
    || |||| ||||||||    
T  53608351 tcagacagggtgatcc 53608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 38647333 - 38647179
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 112  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  | |||||| |||||||| || || ||  |||| ||||| |||||||| || || |    
T  38647333 gacatcaccatcaagctcatcatgcattgtgtttcatcatccaccttctctattctttggaacggtaataaaatgcccccttttaagccttcccacggtc 38647234  T
Q  113 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    || |||||||||||||| | || || || || |||||  | ||||||||||||||    
T  38647233 tcagacaaggtgatccgctctctccctacctcttcattttatgcatggaaaagct 38647179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 23132732 - 23132475
Alignment:
Q  14 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 113  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 23132633  T
Q  114 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 213  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23132632 ccgacaaggtgatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 23132533  T
Q  214 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 271  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23132532 atccaaatcacccctacggggccccatttatcccatctcctatttgcagatgatgtcc 23132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 26587277 - 26587380
Alignment:
Q  67 ctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 166  Q
    ||||| ||||| ||||| ||||| || ||||||||| | |||||||||||||||||||| || ||||| || || || ||||| ||||| ||||| || |    
T  26587277 ctttgaaatggtaacaaattgccccccttcaagcctactcatggcctccgacaaggtgacccattgtctccctacctcttcattctttgtatggagaaac 26587376  T
Q  167 tttc 170  Q
    ||||    
T  26587377 tttc 26587380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 14760016 - 14760174
Alignment:
Q  108 tggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgg 207  Q
    |||||| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||| ||   ||||||||| ||||| |||   |||||||| |||    
T  14760016 tggccttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgg 14760115  T
Q  208 gcacccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 266  Q
    | |||  | ||||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760116 gaaccggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 38348466 - 38348557
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttc 104  Q
    ||||||||||||||||||||||||||||| ||  | || || |  | |||||| ||||||||||| ||||  ||| | ||||||||||||||    
T  38348466 gacatcaccatcaagctcatcatgcattgtgttacctcacccaccttctctatcctttggaatggcaacagattgtctcctttcaagccttc 38348557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 14653827 - 14653570
Alignment:
Q  14 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T
Q  114 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 213  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||    
T  14653727 ccaacaaggtgatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcaccc 14653628  T
Q  214 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 271  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14653627 atccaaatcactcctacggggccgcatttatcccatctcctatttgcagatgatgtcc 14653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 26791322 - 26791471
Alignment:
Q  18 caccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccga 117  Q
    |||||||||||||||||||||||||||  ||||  | || | |||||| ||||||||||| || | |||||| |||||| ||||| | ||||||||| |     
T  26791322 caccatcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcagg 26791421  T
Q  118 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    || ||||||||| | ||||| || ||||| || ||||||||||| |||||    
T  26791422 cagggtgatccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 40328174 - 40328325
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 112  Q
    ||||| |||||||| |||||||||||||| ||  | || ||||| ||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  40328174 gacattaccatcaaactcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggac 40328273  T
Q  113 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 164  Q
    | || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  40328274 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 40328325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 35135370 - 35135219
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 112  Q
    ||||| |||||||| |||||||||||||| ||  | || || || ||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  35135370 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggac 35135271  T
Q  113 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 164  Q
    | || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  35135270 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 35135219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  70 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 169  Q
    |||||||| |||||| |||| |||||||||||  | |||||||| ||||||||||| ||| | || || || |||||||| |||||||||||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  170 cagctgctat 179  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 573245 - 573342
Alignment:
Q  70 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    |||||||| |||||  |||  ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573245 tggaatggtaacaaaatgcatccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 3779199 - 3779048
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 112  Q
    ||||| |||||||| |||||||||||||| ||  | || || || |||||  |  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  3779199 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcattgttatggaatggaaacaagctctctcctttcaagcctactcatggac 3779100  T
Q  113 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 164  Q
    | || |||||||| ||| |||| ||||||||||||||||| || ||||||||    
T  3779099 ttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaa 3779048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 177504 - 177649
Alignment:
Q  22 atcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaag 121  Q
    ||||| |||||||||||||| ||  ||||| | |  | |||| | ||||||||||| ||||| | ||| ||| |||||||| | ||||| ||  ||||||    
T  177504 atcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaag 177603  T
Q  122 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    |||| || ||||| ||||| || |||||| | ||||||||||||||    
T  177604 gtgaccctttgtctccttacctattcatcatctgcatggaaaagct 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 35063007 - 35062956
Alignment:
Q  116 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    |||||||||||||  | ||||| ||||||||||||||||| |||||||||||    
T  35063007 gacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagct 35062956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 19265469 - 19265551
Alignment:
Q  70 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcct 152  Q
    |||||||| |||||| |  | |||||||||||| | ||||| || || |||||||| ||| |||| |||||||||||||||||    
T  19265469 tggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcct 19265551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 42403295 - 42403209
Alignment:
Q  86 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcag 172  Q
    |||| |||||||||||  | ||||||||||| |||||||| ||  | || |||||||| || || || |||||||||||||||||||    
T  42403295 tgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagctttcag 42403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 20284849 - 20285106
Alignment:
Q  14 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||   ||||||||||||| ||||||| ||||||||    
T  20284849 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcct 20284948  T
Q  114 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 213  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20284949 gcgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 20285048  T
Q  214 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285049 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 20285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 50236717 - 50236550
Alignment:
Q  12 ggacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggc 111  Q
    ||||||||||| ||| |||||||||||||| ||  | || || |  ||||||||  | ||||| ||||||||| |||| |||||||||||| | ||||||    
T  50236717 ggacatcaccaccaaactcatcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggc 50236618  T
Q  112 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctat 179  Q
    ||| || ||||||||||| | |||||||| ||||||||| | || ||||| || || |||| ||||||    
T  50236617 ctcagataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactatcagttgctat 50236550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 50451893 - 50452048
Alignment:
Q  12 ggacatcaccatcaagctcatcatgcattgcgt-agcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatgg 110  Q
    ||||||||||||||| || ||||||||||| || | || |||| | || ||||||  | |||||||| |||||  |||||| |||||| ||| | |||||    
T  50451893 ggacatcaccatcaaacttatcatgcattgtgtcacctcctcc-actttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatgg 50451991  T
Q  111 cctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    ||||||||||||||||||| | || ||||| || ||||| ||||| ||||| |||||    
T  50451992 cctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  70 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatcc 128  Q
    |||||||| ||||| ||||||| |||||||||| | ||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 54477558 - 54477407
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 112  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  |||| ||| ||||||||||| |||||| | ||  ||||||||||| | ||||| |    
T  54477558 gacatcaccatcaagctcatcatgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtc 54477459  T
Q  113 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 164  Q
    | || ||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  54477458 tgcgccaaggtgatcctttgtccccttatctcttcattctttgcatggaaaa 54477407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 14307826 - 14307936
Alignment:
Q  60 ctctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 159  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| |||| |||    
T  14307826 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatttgtatg 14307925  T
Q  160 gaaaagctttc 170  Q
    ||||| |||||    
T  14307926 gaaaaactttc 14307936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 14291777 - 14291887
Alignment:
Q  60 ctctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 159  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| | || |||    
T  14291777 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatctgtatg 14291876  T
Q  160 gaaaagctttc 170  Q
    ||||| |||||    
T  14291877 gaaaaactttc 14291887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 3881771 - 3881868
Alignment:
Q  70 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    |||||||| |||||  |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| ||||| |||||||||||    
T  3881771 tggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 46784621 - 46784469
Alignment:
Q  18 caccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccga 117  Q
    |||||||||||||||||||||||| ||  | ||  | | || |||  | ||||||||||| || || |||||||||||||| ||| | ||||||||  ||    
T  46784621 caccatcaagctcatcatgcattgtgttacgtcatcaactttctccgtcctttggaatggaaataaattgccgcctttcaaacctactcatggccttaga 46784522  T
Q  118 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 170  Q
    |||||||||||  | || || || || ||||||||||||||| |||| |||||    
T  46784521 caaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaactttc 46784469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 33803974 - 33804065
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttc 104  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  ||||||||||| |||||||| |||||  |||| ||||||||||||||    
T  33803974 gacatcaccatcaagctcatcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaaatgcctcctttcaagccttc 33804065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 75967 - 76057
Alignment:
Q  77 ggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    |||||||| ||||  | ||||||||| | ||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  61 tctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatgg 160  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||| || ||| | || || ||| | |||||| |||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  161 aaaagct 167  Q
    |||||||    
T  32874463 aaaagct 32874457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 7817131 - 7817285
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 112  Q
    |||||||| |||||||||||||||||||| ||| | ||  | |  ||||||||  | ||||||||||||||  | ||  ||||||||||| | ||||| |    
T  7817131 gacatcacaatcaagctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 7817230  T
Q  113 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    || |||| ||||| || || || ||||| |||||||| |||||||||||||||||    
T  7817231 tcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 24893990 - 24893833
Alignment:
Q  13 gacatcaccatcaagctcatcatgcattgcgt-agcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggc 111  Q
    ||||||||||||||||||||||||||||| || | || ||||   || ||| ||| | |||||||| |||||  |||| |||||||||||  | |||||     
T  24893990 gacatcaccatcaagctcatcatgcattgtgtcacctcctccacatt-ctccatattatggaatggtaacaaaatgccccctttcaagcccacacatggt 24893892  T
Q  112 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 170  Q
    ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  24893891 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 24893833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 24990744 - 24990660
Alignment:
Q  86 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 170  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| ||||||||||| ||||||||    
T  24990744 tgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagctttc 24990660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 13599639 - 13599745
Alignment:
Q  70 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 169  Q
    |||||||| |||||||| ||||  ||||||||| | ||||  ||||| |||||||||||  | || |||||||| |||||| | || |||||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  170 cagctgc 176  Q
    |||||||    
T  13599739 cagctgc 13599745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 35233542 - 35233599
Alignment:
Q  70 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatc 127  Q
    |||||||| |||||||||||   |||||||||| | ||||| ||||||||||||||||    
T  35233542 tggaatggaaacaagttgcctaatttcaagcctacacatggtctccgacaaggtgatc 35233599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 16770059 - 16769956
Alignment:
Q  70 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 169  Q
    |||||||| ||||| ||||||| |||||| ||| | ||||| || ||||||||||||||  | || |||||||| |||||| | || |||||||| || |    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactct 16769960  T
Q  170 cagc 173  Q
    ||||    
T  16769959 cagc 16769956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 1353927 - 1353794
Alignment:
Q  31 atcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgt 130  Q
    |||||||||||||| || ||  | | || |||||| || | ||||||||| ||| || | || ||||||||| | |||||||||  ||||||||||||      
T  1353927 atcatgcattgcgttgcctcctccactttctctatcctctcgaatgggaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatccac 1353828  T
Q  131 tgtccccttatcttttcatcctttgcatggaaaa 164  Q
    | || || ||||||||||| ||||| ||||||||    
T  1353827 tctcaccatatcttttcattctttgtatggaaaa 1353794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 1579304 - 1579159
Alignment:
Q  22 atcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaag 121  Q
    ||||| |||||||||||||| ||  ||||| | | || |||||| || | |||| | ||||||||||| || ||  | ||| | ||||| ||| |||| |    
T  1579304 atcaatctcatcatgcattgtgtttcttcttcaactttctctattctctagaatagaaacaagttgcctccctttcatcctactcatgggctcagacagg 1579205  T
Q  122 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 167  Q
    |||||||| | |||||||| || || || |||||||||||||||||    
T  1579204 gtgatccgctctccccttacctctttattctttgcatggaaaagct 1579159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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