View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_272 (Length: 283)
Name: NF10145A_low_272
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_272 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 29090003 - 29090269
Alignment:
| Q |
1 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcatgaattgaagctacacnnnnnnnntcatcaacttttgccaaatcacgggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
29090003 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcgtgaattgaagctgcacaagaaaa-tcatcaacttttgccaaatcacgggt |
29090101 |
T |
|
| Q |
101 |
cacacgggagacatgttgggtaaatatgtcgacacttatttgagggattgggggttgtatggtaagatattaacggtgacggtggataatgccaaggcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29090102 |
cacacgggagacatgttgggtaaatatgttgacacttatttgagggattgggggttgtatggtaagatattaacggtaacggtggataatgccaaggcaa |
29090201 |
T |
|
| Q |
201 |
ttgatgtgatgattcgatatttgcataatatgatgagttcttgggacaatcacgtcctaaatggggat |
268 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29090202 |
atgatgttatgattcgatatctgcataacatgatgagttcttgggacaatcacgtcctaaatggggat |
29090269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 5933756 - 5933490
Alignment:
| Q |
1 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcatgaattgaagctacacnnnnnnnntcatcaacttttgccaaatcacgggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||| ||| |
|
|
| T |
5933756 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcgtgaattgaagctgcacaagaaaa-tcatcaacttttgccaaatcataggt |
5933658 |
T |
|
| Q |
101 |
cacacgggagacatgttgggtaaatatgtcgacacttatttgagggattgggggttgtatggtaagatattaacggtgacggtggataatgccaaggcaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5933657 |
cacatgggagacatgttgggtaaatatgttgacacttatttgagggattggggcttgtatggtaagatattaacggtaacggtggataatgccaaggcaa |
5933558 |
T |
|
| Q |
201 |
ttgatgtgatgattcgatatttgcataatatgatgagttcttgggacaatcacgtcctaaatggggat |
268 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5933557 |
atgatgttatgattcgatatctgcataatatgatgagttattgggacaatcacgtcctaaatggggat |
5933490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 5935708 - 5935974
Alignment:
| Q |
1 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcatgaattgaagctacacnnnnnnnntcatcaacttttgccaaatcacgggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
5935708 |
tcaaatcaaaacttaaattacatgagtttcatcgttcattttgttgatcgtgaattgaagctgcacaagaaaa-tcatcaacttttgccaaatcatgggt |
5935806 |
T |
|
| Q |
101 |
cacacgggagacatgttgggtaaatatgtcgacacttatttgagggattgggggttgtatggtaagatattaacggtgacggtggataatgccaaggcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
5935807 |
cacacgggagacatgttgggtaaatatgttgacacttatttgagggattgggggttgtatggtaagatattaacgataacggtggataatgccaaggcaa |
5935906 |
T |
|
| Q |
201 |
ttgatgtgatgattcgatatttgcataatatgatgagttcttgggacaatcacgtcctaaatggggat |
268 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5935907 |
atgatgttatgattcgatatctgcataacatgatgagttcttgggacaatcacgtcctaaatggggat |
5935974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 4316753 - 4316496
Alignment:
| Q |
1 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcatgaattgaagctacacnnnnnnnntcatcaacttttgccaaatcacgggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| || |
|
|
| T |
4316753 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcgtgaattgaagctgcacaagaaaa-tcatcaacttttgccaaatcacagg- |
4316656 |
T |
|
| Q |
101 |
cacacgggagacatgttgggtaaatatgtcgacacttatttgagggattgggggttgtatggtaagatattaacggtgacggtggataatgccaaggcaa |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4316655 |
--------agacatgttgggtaaatatgttgacacttatttgagggattgggggttgtatggtaagatattaacggtaacggtggataatgccaaggcaa |
4316564 |
T |
|
| Q |
201 |
ttgatgtgatgattcgatatttgcataatatgatgagttcttgggacaatcacgtcctaaatggggat |
268 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4316563 |
atgatgttatgattcaatatttgcataacatgatgagttcttgggacaatcacgtcctaaatggggat |
4316496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 16045912 - 16046178
Alignment:
| Q |
1 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgttgatcatgaattgaagctacacnnnnnnnntcatcaacttttgccaaatcacgggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |||||||||||||||||||||| || |
|
|
| T |
16045912 |
tcaaatcaaaacttaaattacatgagtttgaccgttcattttgctgatcgtgaattgaagctgcacaagaaaa-tcatcaacttttgccaaatcacaagt |
16046010 |
T |
|
| Q |
101 |
cacacgggagacatgttgggtaaatatgtcgacacttatttgagggattgggggttgtatggtaagatattaacggtgacggtggataatgccaaggcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||| ||| |
|
|
| T |
16046011 |
cacacgggagacatgttgggtaaatatgttgacacttatttgagggattgagggttgtatggtaagatattaacggtaacggtgggtaatgccaagacaa |
16046110 |
T |
|
| Q |
201 |
ttgatgtgatgattcgatatttgcataatatgatgagttcttgggacaatcacgtcctaaatggggat |
268 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16046111 |
atgatgttatgattcgatatctgcataacatgatgagttcttgggacaatcacgtcctaaatggggat |
16046178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 77 - 252
Target Start/End: Original strand, 10142918 - 10143093
Alignment:
| Q |
77 |
atcaacttttgccaaatcacgggtcacacgggagacatgttgggtaaatatgtcgacacttatttgagggattgggggttgtatggtaagatattaacgg |
176 |
Q |
| |
|
||||||||||| ||||||| ||||||||| | ||| ||||||||||||||||| ||||| ||||| ||| |||| |||||| | ||||| || ||||||| |
|
|
| T |
10142918 |
atcaacttttgtcaaatcatgggtcacaccgaagatatgttgggtaaatatgttgacacatatttaaggaattgagggttgaacggtaaaatcttaacgg |
10143017 |
T |
|
| Q |
177 |
tgacggtggataatgccaaggcaattgatgtgatgattcgatatttgcataatatgatgagttcttgggacaatca |
252 |
Q |
| |
|
| |||||||| |||| |||| ||| ||| || ||||||||||| | ||||| |||||||||| |||| |||||| |
|
|
| T |
10143018 |
taacggtggacaatgtcaagtcaaatgaagttatgattcgataccttcataacatgatgagtttgtggggcaatca |
10143093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University