View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_275 (Length: 282)

Name: NF10145A_low_275
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_275
NF10145A_low_275
[»] chr1 (13 HSPs)
chr1 (9-150)||(1350374-1350515)
chr1 (167-279)||(47586798-47586910)
chr1 (160-237)||(41061739-41061814)
chr1 (160-225)||(49968797-49968861)
chr1 (160-244)||(47107251-47107334)
chr1 (167-235)||(12173683-12173750)
chr1 (160-243)||(9903853-9903934)
chr1 (160-198)||(41181683-41181721)
chr1 (160-237)||(40292678-40292753)
chr1 (167-234)||(10722517-10722582)
chr1 (160-234)||(10711701-10711773)
chr1 (167-217)||(25592088-25592136)
chr1 (160-217)||(1395048-1395103)
[»] chr3 (11 HSPs)
chr3 (160-282)||(24124391-24124513)
chr3 (160-234)||(26845341-26845413)
chr3 (160-217)||(19221599-19221655)
chr3 (160-237)||(32233673-32233749)
chr3 (167-234)||(49500930-49500996)
chr3 (167-234)||(43122275-43122341)
chr3 (160-199)||(25341965-25342004)
chr3 (167-234)||(46664955-46665021)
chr3 (160-195)||(47536740-47536775)
chr3 (160-198)||(32093544-32093582)
chr3 (167-217)||(50543697-50543746)
[»] chr7 (11 HSPs)
chr7 (160-282)||(4076744-4076865)
chr7 (160-279)||(18654385-18654503)
chr7 (160-217)||(20047745-20047801)
chr7 (160-243)||(20037588-20037670)
chr7 (160-225)||(23397268-23397331)
chr7 (167-234)||(7459267-7459333)
chr7 (167-214)||(10282439-10282485)
chr7 (160-217)||(9036298-9036353)
chr7 (160-234)||(46177725-46177797)
chr7 (175-244)||(28060062-28060130)
chr7 (160-241)||(29114139-29114218)
[»] chr4 (9 HSPs)
chr4 (160-282)||(18935136-18935258)
chr4 (160-243)||(1844846-1844928)
chr4 (160-243)||(19164457-19164538)
chr4 (160-217)||(12881299-12881355)
chr4 (160-234)||(10563905-10563978)
chr4 (160-237)||(18107150-18107225)
chr4 (160-282)||(52741388-52741506)
chr4 (160-234)||(53779514-53779588)
chr4 (167-217)||(31863744-31863792)
[»] chr5 (8 HSPs)
chr5 (160-279)||(40089807-40089926)
chr5 (160-243)||(6048707-6048789)
chr5 (160-234)||(20209317-20209389)
chr5 (160-234)||(4922705-4922777)
chr5 (160-216)||(8891966-8892021)
chr5 (160-198)||(7001394-7001432)
chr5 (160-243)||(34875025-34875107)
chr5 (160-217)||(4416314-4416369)
[»] chr2 (5 HSPs)
chr2 (160-279)||(18704346-18704464)
chr2 (160-243)||(9393007-9393089)
chr2 (160-234)||(24314021-24314093)
chr2 (160-237)||(3000342-3000417)
chr2 (160-217)||(7075583-7075638)
[»] chr8 (6 HSPs)
chr8 (160-244)||(10267576-10267659)
chr8 (167-231)||(26030969-26031031)
chr8 (160-234)||(45256422-45256495)
chr8 (160-243)||(29470784-29470866)
chr8 (167-217)||(17658310-17658359)
chr8 (160-195)||(31082242-31082277)
[»] chr6 (5 HSPs)
chr6 (160-234)||(26526001-26526073)
chr6 (160-199)||(17874432-17874471)
chr6 (160-234)||(17079788-17079860)
chr6 (164-217)||(21251971-21252022)
chr6 (160-234)||(6831528-6831600)
[»] scaffold0179 (1 HSPs)
scaffold0179 (160-237)||(6997-7073)
[»] scaffold0308 (1 HSPs)
scaffold0308 (160-216)||(11550-11605)
[»] scaffold0007 (1 HSPs)
scaffold0007 (167-217)||(181607-181655)
[»] scaffold0227 (1 HSPs)
scaffold0227 (167-215)||(8404-8450)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 1350374 - 1350515
Alignment:
Q  9 aacatagaggactgatacaaagctttaatccagtgacatcttatcaacattatttcttaagcgcaattcgtgtgataaaatattaaagatgtaaaagcta 108  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1350374 aacatagaggactgatacaaagctttaatccagtgacattttatcaacattgtttcttaagcgcaattcgtatgataaaatattaaagatgtaaaagcta 1350473  T
Q  109 gtttcatattagttaaattagttagcctaattggctatataa 150  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1350474 gtttcatattagttaaattagttagcctaattggctatataa 1350515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 47586798 - 47586910
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaacaaacagaaagacaagcatccaaaa 266  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| |||||||| |||||||||  ||   | |||||| ||| ||    
T  47586798 aaaaatggaatatatattaaccaccaaaagcaaactcctctaacacaaggtgtgccaaatgaattactttaaaaacaatgagtcggtcaagcacccataa 47586897  T
Q  267 acaaaccattaag 279  Q
    |||||||||||||    
T  47586898 acaaaccattaag 47586910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 41061814 - 41061739
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactcta 237  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||||||| |||||||||||    
T  41061814 aacaatcaaaaatggaatatatattaac-accaaaagcaa-ctcttctagcacaaggtgtgctaaaagaattactcta 41061739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 49968797 - 49968861
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaa 225  Q
    |||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||    
T  49968797 aacaatcaaaaatggaatttatattaaccaccaaaagc-aacttctctagcacaaggtgtgctaaa 49968861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 47107334 - 47107251
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaacaa 244  Q
    |||||| ||||||| ||||||||||||| ||||||||| ||||||||||| ||||||| ||| ||| ||| ||||||| ||||||    
T  47107334 aacaatcaaaaatgaaatatatattaactaccaaaagc-aactcctctagtacaaggtgtgccaaaagaactactctacaaacaa 47107251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 12173683 - 12173750
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactc 235  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||| | ||| ||| |||||||||    
T  12173683 aaaaatggaatatatattaaccacaaaaaac-aactcctctagcacaagatgtgccaaaagaattactc 12173750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 9903934 - 9903853
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaaca 243  Q
    |||||| ||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||| ||||||| ||| ||||||| |||||    
T  9903934 aacaatcaaaaatggaat-tatgttaaccaccaaaagc-aactcttctagtacaaggtgtgctaaaagaactactctacaaaca 9903853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 41181683 - 41181721
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagca 198  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  41181683 aacaataaaaaatgggatatatattaaccaccaaaagca 41181721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 40292753 - 40292678
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactcta 237  Q
    |||||| ||||||||||| |||||||| |||||||||||| ||| ||||||||||||| ||| ||| ||| |||||||    
T  40292753 aacaatcaaaaatggaat-tatattaatcaccaaaagcaa-ctcttctagcacaaggtgtgccaaaagaactactcta 40292678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 10722517 - 10722582
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||| ||| ||| ||||    
T  10722517 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggtgtgccaaaagaactact 10722582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 10711773 - 10711701
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||| ||||||| ||| ||||||||||||||||||| ||||| ||||||||||||| ||| ||| ||| ||||    
T  10711773 aacaatcaaaaatgaaat-tatattaaccaccaaaagc-aactcttctagcacaaggtgtgccaaaagaactact 10711701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 25592136 - 25592088
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  25592136 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggt 25592088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 1395103 - 1395048
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||| ||||||||||| ||||||||||||||||| | ||||| |||||||||||||    
T  1395103 aacaatcaaaaatggaat-tatattaaccaccaaaaac-aactcttctagcacaaggt 1395048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 160 - 282
Target Start/End: Complemental strand, 24124513 - 24124391
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaacaaacagaaagacaagca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||||||| |||||||||||||  | |||||||    
T  24124513 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaagtgtgtcaaaggaattactttaaaaacaaacagtcaaacaagca 24124414  T
Q  260 tccaaaaacaaaccattaagtga 282  Q
    |||||||||||||||||||||||    
T  24124413 tccaaaaacaaaccattaagtga 24124391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 26845341 - 26845413
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  26845341 aacaatcaaaaatggaatatatattaac-accaaaagcaa-ctcctctagcacaaggtgtgctaaaagaattact 26845413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 19221599 - 19221655
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  19221599 aacaataaaaaatggaatatatattaacaaccaaaagc-aactcctctagcacaaggt 19221655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 32233749 - 32233673
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactcta 237  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| |||||||    
T  32233749 aacaataaaaaatgaaatttatattaaccaccaaaagc-aactcctctagcacaaggtgtgccaaaagaactactcta 32233673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 49500996 - 49500930
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||| | ||| ||| ||||||||    
T  49500996 aaaaatggaatatatattaaccacaaaaagc-aactcctctagcacaagatgtgccaaaagaattact 49500930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 43122341 - 43122275
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||||||||||||||||||||| |||||| ||||||||||||| ||| | ||| ||| ||||||||    
T  43122341 aaaaatggaatatatattaaccacaaaaagc-aactcctctagcataagatgtgccaaaagaattact 43122275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 25342004 - 25341965
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaa 199  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  25342004 aacaatcaaaaatgaaatatatattaaccaccaaaagcaa 25341965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 46664955 - 46665021
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||| ||||||||||||||||| |||||  ||||||||||||||||| | ||| ||| ||||||||    
T  46664955 aaaaatagaatatatattaaccacaaaaag-taactcctctagcacaagatgtgccaaaagaattact 46665021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 47536740 - 47536775
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaa 195  Q
    |||||||||||||||||| |||||||||||||||||    
T  47536740 aacaataaaaaatggaatttatattaaccaccaaaa 47536775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 32093582 - 32093544
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagca 198  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  32093582 aacaatcaaaaatgggatatatattaaccaccaaaagca 32093544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 50543697 - 50543746
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||||||||||||||||| || ||||||| ||||||||||||| |||||    
T  50543697 aaaaatggaatatatattaatcatcaaaagc-aactcctctagcataaggt 50543746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 160 - 282
Target Start/End: Original strand, 4076744 - 4076865
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaacaaacagaaagacaagca 259  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||| ||  |||||||||    
T  4076744 aacaataaaaaatggaatatataataatcaccaaaagcaaactcctctagcacaaggtgtgccaaaagaattactttaaaaacaaagagtcagacaagca 4076843  T
Q  260 tccaaaaacaaaccattaagtga 282  Q
    ||| |||||||||||||||||||    
T  4076844 tcc-aaaacaaaccattaagtga 4076865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 18654503 - 18654385
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaacaaacagaaagacaagca 259  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||| ||| ||| |||| || ||||| | ||  | |||| ||    
T  18654503 aacaataaaaaatggaatataaattaaccaccaaaagc-aactcctctagcacaaggtgtgccaaaagaactactttacaaacacagagtcatacaaaca 18654405  T
Q  260 tccaaaaacaaaccattaag 279  Q
     |||||| ||||||||||||    
T  18654404 accaaaaccaaaccattaag 18654385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 20047801 - 20047745
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  20047801 aacaataaaaaatggaatatatattaaccaccaaaagc-aactcctctagtacaaggt 20047745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 20037670 - 20037588
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaaca 243  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||| ||| |||| || |||||    
T  20037670 aacaatcaaaaatggaatatatattaaccaccaaaagc-aactcctctagcataaggtgtgccaaaagaactactttacaaaca 20037588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 23397331 - 23397268
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaa 225  Q
    |||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||    
T  23397331 aacaatcaaaaatggaatatatattaac-accaaaag-aaactcctctagcacaaggtgtgctaaa 23397268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 7459333 - 7459267
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||||||||||||||||| |||||||||| |||||| |||||||||||| ||| ||| ||||||||    
T  7459333 aaaaatggaatatatattaaacaccaaaagc-aactcccctagcacaaggtgtgccaaaagaattact 7459267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 10282485 - 10282439
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaa 214  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||    
T  10282485 aaaaatggaatatatattaaccacaaaaaac-aactcctctagcacaa 10282439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 9036298 - 9036353
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||| ||||||  |||||||||||||||||||||  |||||||||||||| |||||    
T  9036298 aacaatcaaaaataaaatatatattaaccaccaaaa--aaactcctctagcataaggt 9036353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 46177725 - 46177797
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||| |||||||||||||||||| | |||||||| | ||||||||||| | ||||| ||||||| ||||||||    
T  46177725 aacaatcaaaaatggaatatatatt-agcaccaaaaac-aactcctctagtataaggtgtgctaaaagaattact 46177797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 28060062 - 28060130
Alignment:
Q  175 aatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaacaa 244  Q
    |||||||||||| |||||||||| ||||||||||||| ||||| ||  ||| || ||||| |||||||||    
T  28060062 aatatatattaaacaccaaaagc-aactcctctagcataaggtgtgtcaaatgagttactttaaaaacaa 28060130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 29114218 - 29114139
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaa 241  Q
    |||||| ||||||||||| |||||||| |||||||||||| ||  ||||||||||||| ||| ||| ||  |||||||||||    
T  29114218 aacaatcaaaaatggaat-tatattaatcaccaaaagcaa-ctattctagcacaaggtgtgccaaaagagctactctaaaaa 29114139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 160 - 282
Target Start/End: Original strand, 18935136 - 18935258
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaacaaacagaaagacaagca 259  Q
    |||||| ||||||| |||||||||||||| ||||||||||||||| |||||||||||| ||| ||| |||||||| |||||||||||||  ||||||| |    
T  18935136 aacaattaaaaatgaaatatatattaaccgccaaaagcaaactccactagcacaaggtgtgccaaatgaattactttaaaaacaaacagtcagacaagta 18935235  T
Q  260 tccaaaaacaaaccattaagtga 282  Q
    |||||||||||||||||||||||    
T  18935236 tccaaaaacaaaccattaagtga 18935258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 1844928 - 1844846
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaaca 243  Q
    |||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||| ||| ||| ||  ||||||| |||||    
T  1844928 aacaataaaaaatggaatttatattaaccatcaaaaac-aactcctctagcacaaggtgtgccaaaagagctactctacaaaca 1844846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 19164457 - 19164538
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaaca 243  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||| ||| ||| ||||||| |||||    
T  19164457 aacaatcaaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggtgtgccaaaagaactactctacaaaca 19164538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 12881355 - 12881299
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  12881355 aacaatcaacaatggaatttatattaaccaccaaaagc-aactcctctagcacaaggt 12881299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 10563978 - 10563905
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||| |||||||||||||||||||| |||||||||| |||||| |||||| ||||| ||| | | ||||||||    
T  10563978 aacaatcaaaaatggaatatatattaaacaccaaaagc-aactcccctagcataaggtgtgccagaagaattact 10563905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 18107225 - 18107150
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactcta 237  Q
    |||||||||||||||||| |||||||| |||||||||| ||||| ||| ||||||||| ||| ||| ||| |||||||    
T  18107225 aacaataaaaaatggaat-tatattaatcaccaaaagc-aactcttctggcacaaggtgtgccaaaagaactactcta 18107150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 282
Target Start/End: Complemental strand, 52741506 - 52741388
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaacaaacagaaagacaagca 259  Q
    |||||| ||||||| ||| |||||||| |||||||||||| ||| ||||||||||||| ||| ||| ||| ||||||| ||| ||| ||  | |||| ||    
T  52741506 aacaatcaaaaatgaaat-tatattaatcaccaaaagcaa-ctcttctagcacaaggtgtgccaaaagaactactctataaataaagagtcatacaaaca 52741409  T
Q  260 tccaaaaacaaaccattaagtga 282  Q
     ||  ||||||||||||||||||    
T  52741408 acc--aaacaaaccattaagtga 52741388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 53779514 - 53779588
Alignment:
Q  160 aacaataaaaaatggaatatatatt-aaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||||||||||| |||||||||| || |||||||||| |||||  |||||||||||| ||| ||| ||||||||    
T  53779514 aacaataaaaaatgaaatatatattaaaacaccaaaagc-aactctcctagcacaaggtgtgccaaaagaattact 53779588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 31863744 - 31863792
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  31863744 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggt 31863792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 279
Target Start/End: Original strand, 40089807 - 40089926
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaacaaacagaaagacaagca 259  Q
    |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||| || |||||||| | ||  |||||||||    
T  40089807 aacaatcaaaaatgtaatatatattaaccaccaaaagcgaacccctctagcacaaggtgtgccaaaggaattgctttaaaaacataaagttagacaagca 40089906  T
Q  260 tccaaaaacaaaccattaag 279  Q
     ||| |||||| ||||||||    
T  40089907 cccataaacaatccattaag 40089926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 6048707 - 6048789
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||| ||| ||||||| |||||    
T  6048707 aacaataaaaaatggaatatatattaaccaccaaaagc-aactcctctagcataaggtgtgccaaaagaactactctacaaaca 6048789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 20209389 - 20209317
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  20209389 aacaatcaaaaatggaatatatattaac-accaaaagcaa-ctcctctagcacaaggtgtgctaaaagaattact 20209317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 4922705 - 4922777
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||| |||||||||||||||||||| |||||||||| ||||||||||||| ||||| ||||||| ||||||||    
T  4922705 aacaatcaaaaatggaatatatattaa-caccaaaagc-aactcctctagcataaggtgtgctaaaagaattact 4922777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 8891966 - 8892021
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaagg 216  Q
    ||||||||||||||| |||||||||||||||||||||| | ||||| ||||||||||    
T  8891966 aacaataaaaaatgggatatatattaaccaccaaaagc-agctcctatagcacaagg 8892021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 7001432 - 7001394
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagca 198  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  7001432 aacaataaaaaatgggatatatattaaccaccaaaagca 7001394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 34875107 - 34875025
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaaca 243  Q
    |||||| ||||||||||| ||||||||||||||||||| | || || ||||||||||| ||| ||| ||  ||||||| |||||    
T  34875107 aacaatcaaaaatggaatttatattaaccaccaaaagc-agcttctgtagcacaaggtgtgccaaaagagctactctacaaaca 34875025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 4416369 - 4416314
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||||||||||||||| ||||| || |||||||||| ||||| |||||||||||||    
T  4416369 aacaataaaaaatggaat-tatataaatcaccaaaagc-aactcttctagcacaaggt 4416314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 18704464 - 18704346
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaacaaacagaaagacaagca 259  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| | ||| ||| ||||||||  ||| ||||| ||  |||||||||    
T  18704464 aacaataaaaaatggaatatatattaaccatcaaaagc-aactcgtctagcacaagatgtgccaaaagaattactgcaaatacaaagagtcagacaagca 18704366  T
Q  260 tccaaaaacaaaccattaag 279  Q
     |||||||||||||||||||    
T  18704365 accaaaaacaaaccattaag 18704346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 9393007 - 9393089
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaaca 243  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| |||| || |||||    
T  9393007 aacaataaaaaatgaaatatatattaaccaccaaaagc-aactcctctagcacaaggtgtgccaaaagaaatactttacaaaca 9393089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 24314093 - 24314021
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  24314093 aacattaaaaaatggaatatatattaac-accaaaagcaa-ctcctctagcacaaggtgtgctaaacgaattact 24314021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 3000417 - 3000342
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactcta 237  Q
    |||||||||||||||||| |||||||| |||||||||| ||||| ||| ||||||||| ||| ||| ||| |||||||    
T  3000417 aacaataaaaaatggaat-tatattaatcaccaaaagc-aactcttctggcacaaggtgtgccaaaagaactactcta 3000342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 7075583 - 7075638
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||||||||||||||| |||||||| || ||||||| ||||| |||||||||||||    
T  7075583 aacaataaaaaatggaat-tatattaatcatcaaaagc-aactcttctagcacaaggt 7075638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 10267576 - 10267659
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaacaa 244  Q
    ||||||||||||||||||||||| ||| ||||||||  || ||||||||||||||||| ||| |||||||||||| |||||||||    
T  10267576 aacaataaaaaatggaatatataataatcaccaaaaataa-ctcctctagcacaaggtgtgccaaaggaattactttaaaaacaa 10267659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 26030969 - 26031031
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaatt 231  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||    
T  26030969 aaaaatggaatatatattaac-accaaaagcaa-ctcctctagcacaaggtgtgctaaaagaatt 26031031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 45256495 - 45256422
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    ||||||| |||||| ||||||||||||||||||||| | ||||||||||||||||||| ||| ||| ||| ||||    
T  45256495 aacaatagaaaatgaaatatatattaaccaccaaaaac-aactcctctagcacaaggtgtgccaaaagaactact 45256422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 29470866 - 29470784
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactctaaaaaca 243  Q
    |||||||||||||| ||||||||||||||||||||||| | ||||| ||||| ||||| ||| ||| ||  ||||||| |||||    
T  29470866 aacaataaaaaatgaaatatatattaaccaccaaaagc-agctcctgtagcataaggtgtgccaaaagagctactctacaaaca 29470784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 17658310 - 17658359
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||||||||    
T  17658310 aaaaatggaatatatattaaccaccaaaagc-agctcctgtagcacaaggt 17658359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 31082277 - 31082242
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaa 195  Q
    |||||||||||||||||| |||||||||||||||||    
T  31082277 aacaataaaaaatggaatttatattaaccaccaaaa 31082242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 26526001 - 26526073
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  26526001 aacaataaaaaatggaatatatattaa-caccaaaagc-aacttctctagcacaaggtgtgctaaaagaattact 26526073  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 17874471 - 17874432
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaa 199  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  17874471 aacaataaaaaatggaatatatattaaacaccaaaagcaa 17874432  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 17079860 - 17079788
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||| ||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||| ||| ||| ||||    
T  17079860 aacaatcaaaaatggaat-tatattaaccaccaaaag-aaactcttctagcacaaggtgtgccaaaagaactact 17079788  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 21252022 - 21251971
Alignment:
Q  164 ataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    ||||||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  21252022 ataaaaaatggaatatatattaa-caccaagagc-aactcctctagcacaaggt 21251971  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 6831600 - 6831528
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||| ||||||||||| |||||||| |||||||||| ||||| ||||||||||||| ||| ||| ||| ||||    
T  6831600 aacaatcaaaaatggaat-tatattaatcaccaaaagc-aactcttctagcacaaggtgtgccaaaagaactact 6831528  T

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Target: scaffold0179 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 6997 - 7073
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctct-agcacaaggtatgctaaaggaattactcta 237  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||| || ||||||| |||||||||||    
T  6997 aacaataaaaaatggaatatatattaa-caccagaagc-aactcctctaagcacaaagtgtgctaaaagaattactcta 7073  T

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Target: scaffold0308 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 11550 - 11605
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaagg 216  Q
    |||||| |||||||| |||||||||||||||||||||| | ||||| ||||||||||    
T  11550 aacaatcaaaaatgggatatatattaaccaccaaaagc-agctcctatagcacaagg 11605  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 181607 - 181655
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  181607 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggt 181655  T

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Target: scaffold0227 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 8450 - 8404
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaag 215  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  8450 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaag 8404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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