View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_276 (Length: 281)
Name: NF10145A_low_276
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_276 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 49589007 - 49589277
Alignment:
| Q |
11 |
cagagatgaaggggtcaatcctcacccacaacaaagagaatatagaagcaaggagaacggcccagacaataacaatagttggtgtgcgattcgatttccc |
110 |
Q |
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| T |
49589007 |
cagagatgaaggggtcaatcctcacccacaacaaagagaatatagaagcaaggagaacggcccagacaataacaatagttggtgtgcgattcgatttccc |
49589106 |
T |
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| Q |
111 |
caaaagacccttcaagaaagggtataaatgagcaatgacccatatagcaaagaagagctttccaaatagtggaccccaagattggtaaccactgtttatg |
210 |
Q |
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| T |
49589107 |
caaaagacccttcaagaaagggtataaatgagcaatgacccatatagcaaagaagagctttccaaatagtggaccccaagattggtaaccactgtttatg |
49589206 |
T |
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| Q |
211 |
gcaaaagacacaccagccacaatacctatcaaattcacaataagtactgttgtaggagggataagaagtga |
281 |
Q |
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| T |
49589207 |
gcaaaagacacaccagccacaatacctatcaaattcacaataagtactgttgtaggagggataagaagtga |
49589277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 32838813 - 32838606
Alignment:
| Q |
11 |
cagagatgaaggggtcaatcctcacccacaacaaagagaatatagaagcaaggagaacggcccagacaataacaatagttggtgtgcgattcgatttccc |
110 |
Q |
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| T |
32838813 |
cagagatgaaagggtcaatcctcacccacaacaaagagaatatagaagcaaggagaacaacccagacaataacaacggttcgtgtacgattcgatttccc |
32838714 |
T |
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| Q |
111 |
caaaagacccttcaagaaagggtataaatgagcaatgacccatatagcaaagaagagctttccaaatagtggaccccaagattggtaaccactgtttatg |
210 |
Q |
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| T |
32838713 |
caaaagacccttcaagaaagggtataaatgagcaataacccatatagcaaagaagagctttccaaatagtggaccccgagattggtaaccactatttatg |
32838614 |
T |
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| Q |
211 |
gcaaaaga |
218 |
Q |
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| T |
32838613 |
gaaaaaga |
32838606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 54381131 - 54381184
Alignment:
| Q |
159 |
aaagaagagctttccaaatagtggaccccaagattggtaaccactgtttatggc |
212 |
Q |
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| T |
54381131 |
aaagaagagttttccaaatagaggtccccatgattggtaaccattgtttatggc |
54381184 |
T |
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