View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_280 (Length: 279)

Name: NF10145A_low_280
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_280
NF10145A_low_280
[»] chr1 (10 HSPs)
chr1 (7-279)||(2418730-2419002)
chr1 (74-265)||(40139913-40140105)
chr1 (135-265)||(40026225-40026351)
chr1 (7-61)||(40138136-40138190)
chr1 (74-242)||(40024800-40024967)
chr1 (124-200)||(49441394-49441470)
chr1 (7-46)||(40024615-40024654)
chr1 (77-107)||(40026138-40026168)
chr1 (106-164)||(41184991-41185048)
chr1 (217-254)||(49286507-49286544)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 2419002 - 2418730
Alignment:
Q  7 tttggtgttactgcaaaagtttatgttgactgg-tcattactgacaagtatatatttctttaagattgaattgaagatgggaaaatggggtaataaatat 105  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2419002 tttggtgttactgcaaaagtttatgt-gactgggtcattactgacaagtatatatttctttaagattgaattgaagatgggaaaatggggtaataaatat 2418904  T
Q  106 ttctttatctccctcgtattccatgatattatcaaataaacaataaaataccctatgttcctaaaataaataaataaacatgtttagaaatcaccaacct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2418903 ttctttatctccctcgtattccatgatattatcaaataaacaataaaataccctatgttcctaaaataaataaataaacatgtttagaaatcaccaacct 2418804  T
Q  206 tacactgttctattgttgtgatctaaagggaaaaaggtgaggaatgtagcagggaactgtcatattccttttga 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2418803 tacactgttctattgttgtgatctaaagggaaaaaggtgaggaatgtagcagggaactgtcatattccttttga 2418730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 74 - 265
Target Start/End: Original strand, 40139913 - 40140105
Alignment:
Q  74 aattgaagatgggaaaatggggtaataaatatttctttatctccctcgtattccatgatattatcaaataaacaataaaataccctatgttcctaaaata 173  Q
    |||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||   | |||||||||||||    
T  40139913 aattgaagatgggaaaatggagtaataaatatttctttatctccc-catattccatgatattaccaaataaacaataaaatatgttttgttcctaaaata 40140011  T
Q  174 aataaataaacat--gtttagaaatcaccaaccttacactgttctattgttgtgatctaaagggaaaaaggtgaggaatgtagcagggaactgt 265  Q
    |||||||||||||  |||||||||||||  |||| |||||||||||||||||||||||||||||||||||| || |||  |||||| |||||||    
T  40140012 aataaataaacatatgtttagaaatcacatacctaacactgttctattgttgtgatctaaagggaaaaaggcgatgaagatagcagagaactgt 40140105  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 135 - 265
Target Start/End: Original strand, 40026225 - 40026351
Alignment:
Q  135 tatcaaataaacaataaaataccctatgttcctaaaataaataaataaacatgtttagaaatcaccaaccttacactgttctattgttgtgatctaaagg 234  Q
    ||||||||||||||||||||| | |||||||||||||||| |||| |||||||||||||||||    |||| |||||||| |||||||||||||||||||    
T  40026225 tatcaaataaacaataaaatatcttatgttcctaaaataactaaaaaaacatgtttagaaatc----acctaacactgttttattgttgtgatctaaagg 40026320  T
Q  235 gaaaaaggtgaggaatgtagcagggaactgt 265  Q
    ||||||||||| |||  |||||| |||||||    
T  40026321 gaaaaaggtgaagaagatagcagagaactgt 40026351  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 40138136 - 40138190
Alignment:
Q  7 tttggtgttactgcaaaagtttatgttgactggtcattactgacaagtatatatt 61  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40138136 tttggtgttactgcaaaagtttatgttgaccggtcattactgacaagtatatatt 40138190  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 242
Target Start/End: Original strand, 40024800 - 40024967
Alignment:
Q  74 aattgaagat-gggaaaatggggtaataaatatttctttatctccctcgtattccatgatattatcaaataaacaataaaataccctatgttcc---taa 169  Q
    |||||||||| ||||||||| ||| |||||||||||||| | | || | | ||||||||||||||||||| |||||||||||| | ||||||||    ||    
T  40024800 aattgaagatagggaaaatgtggtgataaatatttctttgtattcc-cattttccatgatattatcaaatgaacaataaaatatcttatgttccaaaaaa 40024898  T
Q  170 aataaataaataaac--atgtttagaaatcaccaaccttacactgttctattgttgtgatctaaagggaaaaagg 242  Q
    ||||| | |||||||  |||||||||||||    |||| ||| |||  |||||||||||||| ||||||||||||    
T  40024899 aataagttaataaacatatgtttagaaatc----acctaacattgt--tattgttgtgatcttaagggaaaaagg 40024967  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 49441470 - 49441394
Alignment:
Q  124 ttccatgatattatcaaataaacaataaaataccctatgttcctaaaataaataaataaacatgtttagaaatcacc 200  Q
    |||||||||||||||| ||||||||||||||| | |||||| |  ||||||||||| | | |||||||| |||||||    
T  49441470 ttccatgatattatcatataaacaataaaatatcttatgtttcagaaataaataaaaagatatgtttagcaatcacc 49441394  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 40024615 - 40024654
Alignment:
Q  7 tttggtgttactgcaaaagtttatgttgactggtcattac 46  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  40024615 tttggtgttactgcaaaagtttatgttgattggtcattac 40024654  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 107
Target Start/End: Original strand, 40026138 - 40026168
Alignment:
Q  77 tgaagatgggaaaatggggtaataaatattt 107  Q
    |||||||||||||||||||||||||||||||    
T  40026138 tgaagatgggaaaatggggtaataaatattt 40026168  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 41184991 - 41185048
Alignment:
Q  106 ttctttatctccctcgtattccatgatattatcaaataaacaataaaataccctatgtt 164  Q
    |||||||||||| || | |||||||||||||||||||| ||||||||||| | ||||||    
T  41184991 ttctttatctcc-tcattttccatgatattatcaaatacacaataaaatatcttatgtt 41185048  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 49286507 - 49286544
Alignment:
Q  217 attgttgtgatctaaagggaaaaaggtgaggaatgtag 254  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  49286507 attgttgtgatctaaagggaaaaaggtgaagaacgtag 49286544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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