View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_281 (Length: 278)
Name: NF10145A_low_281
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_281 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 10047367 - 10047098
Alignment:
| Q |
9 |
aacagagatgtgaaggtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10047367 |
aacagagatgtgaaggtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaag |
10047268 |
T |
|
| Q |
109 |
taaatagcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaacca |
208 |
Q |
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||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10047267 |
taaatagcagaaacaatattactagcatgtgcattgaatccaccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaacca |
10047168 |
T |
|
| Q |
209 |
aagactccacactagtcttcagcactttcttcaccacatcttccttaattacagcctcacacaccactga |
278 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10047167 |
aagactccacactaatcttcaacactttcttcaccacctcttccttaattacagcctcacacaccactga |
10047098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 10872697 - 10872962
Alignment:
| Q |
13 |
gagatgtgaaggtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaa |
112 |
Q |
| |
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||||| |||||||| || || |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
10872697 |
gagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaa |
10872796 |
T |
|
| Q |
113 |
tagcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaaga |
212 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
10872797 |
ttgcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaaga |
10872896 |
T |
|
| Q |
213 |
ctccacactagtcttcagcactttcttcaccacatcttccttaattacagcctcacacaccactga |
278 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10872897 |
ctccacactagtcttcagcactttcttcaccacatcttccttaattacagcctcacacaccactga |
10872962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 10877768 - 10878033
Alignment:
| Q |
13 |
gagatgtgaaggtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaa |
112 |
Q |
| |
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||||| |||||||| || || |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
10877768 |
gagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaa |
10877867 |
T |
|
| Q |
113 |
tagcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaaga |
212 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
10877868 |
ttgcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaaga |
10877967 |
T |
|
| Q |
213 |
ctccacactagtcttcagcactttcttcaccacatcttccttaattacagcctcacacaccactga |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10877968 |
ctccacactagtcttcagcactttcttcaccacatcttccttaattacagcctcacacaccactga |
10878033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 10882839 - 10883104
Alignment:
| Q |
13 |
gagatgtgaaggtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaa |
112 |
Q |
| |
|
||||| |||||||| || || |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
10882839 |
gagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaa |
10882938 |
T |
|
| Q |
113 |
tagcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaaga |
212 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
10882939 |
ttgcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaaga |
10883038 |
T |
|
| Q |
213 |
ctccacactagtcttcagcactttcttcaccacatcttccttaattacagcctcacacaccactga |
278 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10883039 |
ctccacactagtcttcagcactttcttcaccacatcttccttaattacagcctcacacaccactga |
10883104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 10867615 - 10867350
Alignment:
| Q |
13 |
gagatgtgaaggtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaa |
112 |
Q |
| |
|
||||| |||||||| || || |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
10867615 |
gagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaa |
10867516 |
T |
|
| Q |
113 |
tagcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaaga |
212 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
10867515 |
ttgcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaaga |
10867416 |
T |
|
| Q |
213 |
ctccacactagtcttcagcactttcttcaccacatcttccttaattacagcctcacacaccactga |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10867415 |
ctccacactagtcttcagcactttcttcaccacctcttccttaattacagcctcacacaccactga |
10867350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 10886754 - 10887019
Alignment:
| Q |
13 |
gagatgtgaaggtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaa |
112 |
Q |
| |
|
||||| |||||||| || || |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
10886754 |
gagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaa |
10886853 |
T |
|
| Q |
113 |
tagcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaaga |
212 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
10886854 |
ttgcagaaacaatattactagcatgtgcgttaaagccgccaagtgcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaaga |
10886953 |
T |
|
| Q |
213 |
ctccacactagtcttcagcactttcttcaccacatcttccttaattacagcctcacacaccactga |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10886954 |
ctccacactagtcttcagcactttcttcaccacctcttccttaattacagcctcacacaccactga |
10887019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 39677158 - 39676893
Alignment:
| Q |
13 |
gagatgtgaaggtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaa |
112 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
39677158 |
gagatatgaaggtccttgccatcattaacagcttccatcatggtcatacaatgagaactctcaacattttgagcaggatcttgacctgttgccaagtaaa |
39677059 |
T |
|
| Q |
113 |
tagcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaaga |
212 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
39677058 |
ctgctgaaacaatattactagcatgtgcattgaagccaccaagagcaccagccatggctgaaccagtaagatttttaagcatgttaagctcaaccaaaga |
39676959 |
T |
|
| Q |
213 |
ctccacactagtcttcagcactttcttcaccacatcttccttaattacagcctcacacaccactga |
278 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
39676958 |
ctccacgctagtcttcaacactttcttcaccacctcttccttaattacagcctcacaaaccactga |
39676893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 37950410 - 37950226
Alignment:
| Q |
19 |
tgaaggtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaatagcag |
118 |
Q |
| |
|
||||||||| | |||||||| || ||||||||||| || || || || ||||| |||||||| ||||| ||||||||||| || || | |||| |||| |
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| T |
37950410 |
tgaaggtctctcccatcatttacggcttccatcattgttatgcaatgggaactttcaacattttgagctggatcttgaccagtggctataaaaatggcag |
37950311 |
T |
|
| Q |
119 |
aaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctc |
203 |
Q |
| |
|
||||||| ||||||||||| ||||| || || ||||||| ||||| | || ||||||| ||| ||||| | |||||| ||||| |
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|
| T |
37950310 |
aaacaatgttactagcatgggcattgaatccaccaagagtgccagcaacagcagaaccagcaaggtttttgagcatgtttagctc |
37950226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 30707984 - 30708249
Alignment:
| Q |
10 |
acagagatgtgaaggtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagt |
109 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| || || | || |
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| T |
30707984 |
acagaaatgtgaaggtccttgccatcattcacagcttccatcatggtaatacaatgagaactctccacattctgagcaggatcttgaccagtggctatgt |
30708083 |
T |
|
| Q |
110 |
aaatagcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaa |
209 |
Q |
| |
|
| | |||||| ||||| || |||||||| ||||| || || |||||||||||||| | |||||| ||||| || || || | ||||||||||||||||| |
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| T |
30708084 |
agacagcagagacaatgttgctagcatgagcattgaacccaccaagagcaccagcaagggctgatccagttaggttcttaagcatgttaagctcaaccag |
30708183 |
T |
|
| Q |
210 |
agactccacactagtcttcagcactttcttcaccacatcttccttaattacagcctcacacaccac |
275 |
Q |
| |
|
| ||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||| |
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|
| T |
30708184 |
tgcctccacactagtcttcaacactttcttcacaacctcttccttaataacagcctcacacaccac |
30708249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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