View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_282 (Length: 278)
Name: NF10145A_low_282
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_282 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 24430410 - 24430146
Alignment:
| Q |
12 |
atgaaggatcttggaccgttaagttannnnnnnggggcttgaagttttatcttccattgatggcttatttctctcacaggctaagtatgcttctgatctt |
111 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
24430410 |
atgaaggatcttggaccattaagttatttttt-ggggcttgaagttttatcttccattgatggtttatttctctcaaaggctaagtatgcttctgatctt |
24430312 |
T |
|
| Q |
112 |
gtctctcgagcaggtctcactgattgtaaaattgagctcactcctcttgaaccaaatgttcgattttctcctcaagatggtaccttacttgacgatgcaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24430311 |
gtctctcgagcaggtctcactgattgtaaaattgagcacactcctcttgaaccaaatgttcgattttctcctcaagatggtaccttacttgacgatgcaa |
24430212 |
T |
|
| Q |
212 |
cactttatcgtcaactcgtaggtagcttcatttacctcactgttactcgaccaaatatctcttatg |
277 |
Q |
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| || ||||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||| |
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| T |
24430211 |
ctctatatcgtcaactcgtaggcagcttgatttaccttactgttactcgaccagatatctcttatg |
24430146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 29992191 - 29992434
Alignment:
| Q |
12 |
atgaaggatcttggaccgttaagttannnnnnnggggcttgaagttttatcttccattgatggcttatttctctcacaggctaagtatgcttctgatctt |
111 |
Q |
| |
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||||||||||||||||| |||||||| ||| ||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29992191 |
atgaaggatcttggaccattaagttactttttgggg--ttgaagtattatcttcgagtgatggcttgtttctctcacaggctaagtatgcttctgatctt |
29992288 |
T |
|
| Q |
112 |
gtctctcgagcaggtctcactgattgtaaaattgagctcactcctcttgaaccaaatgttcgattttctcctcaagatggtaccttacttgacgatgcaa |
211 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || | ||||| ||||||| |||| ||||||||| ||||| ||||||| || |||||| | ||| | | |
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| T |
29992289 |
gtctctcgagaaggtctcactgattgtaaaatcgaacacactcttcttgaatcaaacgttcgatttactccttaagatggcactttacttaatgatacta |
29992388 |
T |
|
| Q |
212 |
cactttatcgtcaactcgtaggtagcttcatttacctcactgttac |
257 |
Q |
| |
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| ||||||| |||||||||||||| | || |||||||||||||| |
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| T |
29992389 |
ctctttatcaacaactcgtaggtagtctgatatacctcactgttac |
29992434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 16504241 - 16504488
Alignment:
| Q |
12 |
atgaaggatcttggaccgttaagttannnnnnnggggcttgaagttttatcttccattgatggcttatttctctcacaggctaagtatgcttctgatctt |
111 |
Q |
| |
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||||||||||||||||| |||||||| ||| |||||||| |||||||| | |||||| || || |||||||||||||||||||||||||||||| |
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| T |
16504241 |
atgaaggatcttggaccattaagttattttctaggg-cttgaagtattatcttcgagtgatggtttgttcctctcacaggctaagtatgcttctgatctt |
16504339 |
T |
|
| Q |
112 |
gtctctcgagcaggtctcactgattgtaaaattgagctcactcctcttgaaccaaatgttcgattttctcctcaagatggtaccttacttgacgatgcaa |
211 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| || | ||||||||||||| | | ||| ||||| |||||||||||||||| |||||| | ||||| | |
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| T |
16504340 |
gtctctcgagcaggtttcattgattgtaaaatcgaacacactcctcttgaatccgacgtttgatttactcctcaagatggtactttacttaatgatgcta |
16504439 |
T |
|
| Q |
212 |
cactttatcgtcaactcgtaggtagcttcatttacctcactgttactcg |
260 |
Q |
| |
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| |||||||| |||||||||||||| | || |||| |||||||||||| |
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| T |
16504440 |
ctctttatcggcaactcgtaggtagtctgatataccgcactgttactcg |
16504488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 269
Target Start/End: Complemental strand, 53015936 - 53015713
Alignment:
| Q |
46 |
gggcttgaagttttatcttccattgatggcttatttctctcacaggctaagtatgcttctgatcttgtctctcgagcaggtctcactgattgtaaaattg |
145 |
Q |
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||||||||||| | |||||| | ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |
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| T |
53015936 |
gggcttgaagtatcatcttcgagtgatggcttgtttctctcacaggctaagtatgcttcttatcttgtctctcgagcaggtctcagtgatagtaaaattg |
53015837 |
T |
|
| Q |
146 |
agctcactcctcttgaaccaaatgttcgattttctcctcaagatggtaccttacttgacgatgcaacactttatcgtcaactcgtaggtagcttcattta |
245 |
Q |
| |
|
| | |||||||||||||||||| ||||||||| |||||||||||||||| |||||| | ||||| || |||||| | || ||||||||||| | || || |
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| T |
53015836 |
aacacactcctcttgaaccaaacgttcgatttactcctcaagatggtactttacttaatgatgctactctttattggcagctcgtaggtagtcttatata |
53015737 |
T |
|
| Q |
246 |
cctcactgttactcgaccaaatat |
269 |
Q |
| |
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||||||||||||||| ||| |||| |
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| T |
53015736 |
cctcactgttactcggccagatat |
53015713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 17411949 - 17411736
Alignment:
| Q |
12 |
atgaaggatcttggaccgttaagttannnnnnnggggcttgaagttttatcttccattgatggcttatttctctcacaggctaagtatgcttctgatctt |
111 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17411949 |
atgaaggatcttggaccattaagttacttttt-ggggcttgaagtattatcttcgagtgatggcttatttctctcataggctaagtatgcttctgatctt |
17411851 |
T |
|
| Q |
112 |
gtctctcgagcaggtctcactgattgtaaaattgagctcactcctcttgaaccaaatgttcgattttctcctcaagatggtaccttacttgacgatgcaa |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || | ||||||||||||||| |||||| ||||| ||| |||||||||||| |||||| | ||||| | |
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| T |
17411850 |
gtctctcgagcaggtctcactaattgtaaaatcgaacacactcctcttgaacccaatgtttgatttactcttcaagatggtactttacttaatgatgcta |
17411751 |
T |
|
| Q |
212 |
cactttatcgtcaac |
226 |
Q |
| |
|
| |||||||| |||| |
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| T |
17411750 |
ctctttatcgacaac |
17411736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 219
Target Start/End: Complemental strand, 40124413 - 40124239
Alignment:
| Q |
45 |
ggggcttgaagttttatcttccattgatggcttatttctctcacaggctaagtatgcttctgatcttgtctctcgagcaggtctcactgattgtaaaatt |
144 |
Q |
| |
|
||||||||||| |||||||| | ||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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|
| T |
40124413 |
ggggcttgaagcattatcttcgaatgatgacttgtttctctcacaggctaagtatgcttctgatcttgtctctcaagcaggtctcacagattgtaaaatc |
40124314 |
T |
|
| Q |
145 |
gagctcactcctcttgaaccaaatgttcgattttctcctcaagatggtaccttacttgacgatgcaacactttat |
219 |
Q |
| |
|
|| ||||| ||||||||| || ||| |||| |||||||||||||||| ||||| || ||||| || |||||| |
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|
| T |
40124313 |
gaatacactcgtcttgaacccaacattcaatttactcctcaagatggtactttactcgatgatgctactctttat |
40124239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 46 - 269
Target Start/End: Original strand, 12559128 - 12559351
Alignment:
| Q |
46 |
gggcttgaagttttatcttccattgatggcttatttctctcacaggctaagtatgcttctgatcttgtctctcgagcaggtctcactgattgtaaaattg |
145 |
Q |
| |
|
||||||||||| |||||||| | | ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| | |
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| T |
12559128 |
gggcttgaagtattatcttcgagtaatgacttgtttctctcacaggctaagtatgcttctgatcttgtctctctagcaggtctcaatgatactaaaatcg |
12559227 |
T |
|
| Q |
146 |
agctcactcctcttgaaccaaatgttcgattttctcctcaagatggtaccttacttgacgatgcaacactttatcgtcaactcgtaggtagcttcattta |
245 |
Q |
| |
|
| | |||||||||| ||||||||||||||||| ||||||||| || ||| |||||| | ||||| || |||||| | || ||||||||||| || || || |
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| T |
12559228 |
aacacactcctcttaaaccaaatgttcgatttactcctcaaggtgatactttacttaatgatgctactctttattggcatctcgtaggtagtttgatata |
12559327 |
T |
|
| Q |
246 |
cctcactgttactcgaccaaatat |
269 |
Q |
| |
|
||||| ||||||||| ||| |||| |
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|
| T |
12559328 |
cctcattgttactcggccatatat |
12559351 |
T |
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