View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_285 (Length: 277)
Name: NF10145A_low_285
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_285 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 30001118 - 30001387
Alignment:
| Q |
7 |
tttggtgttgagtgcaaaggaggatcctgaagctgtgcagattgaagctgtgaagcagattagtttggggtcttgtgatcctgataatacaccagctgaa |
106 |
Q |
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| T |
30001118 |
tttggagttgagtgcaaaggaggatcctgaagctgtgcagattgaagctgtgaagcagattagtttggggtcttgtgatcctgataatacaccagctgaa |
30001217 |
T |
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| Q |
107 |
attgtggcatacagatactgggtgagttactttgttcattttaagcacattgactttaggttgaggatattggaacttggaagatataagtttcaagttt |
206 |
Q |
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| T |
30001218 |
attgtggcatacagatactgggtgagttactttgttcattttaagcacattgactttaggttgaggatattggaacttggaagatat-agtttcaagttt |
30001316 |
T |
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| Q |
207 |
gattgttatgttattcttaaagaaatatgagtcttttagaagtttgtggagaatttcagatgtgttgttga |
277 |
Q |
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| T |
30001317 |
gattgttatgttattcttaaagaaatatgagtcttttagaagtttgcggagaatttcagatgtgttattga |
30001387 |
T |
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Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 45199247 - 45199361
Alignment:
| Q |
15 |
tgagtgcaaaggaggatcctgaagctgtgcagattgaagctgtgaagcagattagtttggggtcttgtgatcctgataatacaccagctgaaattgtggc |
114 |
Q |
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||||||||||||||||||| || ||||| |||||||||||||| ||||| || |||||||| |||||| | ||||||||||||||||||||| |||| || |
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| T |
45199247 |
tgagtgcaaaggaggatcccgaggctgtacagattgaagctgttaagcaaatcagtttgggatcttgtcaccctgataatacaccagctgaagttgtcgc |
45199346 |
T |
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| Q |
115 |
atacagatactgggt |
129 |
Q |
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| T |
45199347 |
ataccgatactgggt |
45199361 |
T |
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