View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_287 (Length: 277)
Name: NF10145A_low_287
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_287 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 26089571 - 26089438
Alignment:
| Q |
11 |
atgaactaaaaaggatgaataaaataatggaattgacatgtgtaggggatattctccacatagaaaataaatagctaacggtaagccatcccattggaga |
110 |
Q |
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| T |
26089571 |
atgaactaaaaaggatgaataaaataatggaattgacatgtgtaggggatatcctccacatagaaaataaatagctaacggtaagccatctcattggaga |
26089472 |
T |
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| Q |
111 |
ggccactagaaaccctattcttccatatggtatc |
144 |
Q |
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| T |
26089471 |
ggctactagaaaccctatttttccatatggtatc |
26089438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 30649225 - 30649095
Alignment:
| Q |
12 |
tgaactaaaaaggatgaataaaataatggaattgacatgtgtaggggatattctccacatagaaaataaatagctaacggtaagccatcccattggagag |
111 |
Q |
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| T |
30649225 |
tgaaccaaaaaggacgaataaaatcacggaattgacatgtgtaggggatatcctccacatagaaaataaataactagcggtaaaccaacccattggagaa |
30649126 |
T |
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| Q |
112 |
gccactagaaaccctattcttccatatggta |
142 |
Q |
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| T |
30649125 |
cccactagaaagcatatttttccatatggta |
30649095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 26089370 - 26089305
Alignment:
| Q |
212 |
catatcctgacaaaacagatttcccagcatttcctggagtagaaatagtagaattggaggaagtga |
277 |
Q |
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| T |
26089370 |
catatcctgacaaaacagatttcccagcatttcctggagtagaaatagtagaattggaggaagtga |
26089305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 30649025 - 30648960
Alignment:
| Q |
212 |
catatcctgacaaaacagatttcccagcatttcctggagtagaaatagtagaattggaggaagtga |
277 |
Q |
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| T |
30649025 |
cataacctgacaagactgatttcccagcatttcctggggcagaaatggtaaaattggaggaagtga |
30648960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 29552911 - 29552863
Alignment:
| Q |
229 |
gatttcccagcatttcctggagtagaaatagtagaattggaggaagtga |
277 |
Q |
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| T |
29552911 |
gattttccagcatttcctagggtagaaatagtagaattggaggaagtga |
29552863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 28866078 - 28866021
Alignment:
| Q |
220 |
gacaaaacagatttcccagcatttcctggagtagaaatagtagaattggaggaagtga |
277 |
Q |
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| T |
28866078 |
gacaagacagatttcccaacattttttagggtagaaatagtagaattggaggaagtga |
28866021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 14727896 - 14727832
Alignment:
| Q |
213 |
atatcctgacaaaacagatttcccagcatttcctggagtagaaatagtagaattggaggaagtga |
277 |
Q |
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| T |
14727896 |
atatcctgacaagacagatcttccaacattttttggggtggaaatagtagaattggaggaagtga |
14727832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 15329976 - 15329927
Alignment:
| Q |
228 |
agatttcccagcatttcctggagtagaaatagtagaattggaggaagtga |
277 |
Q |
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| T |
15329976 |
agatttcccaacattttttagggtagaaatagtagaattggaggaagtga |
15329927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 15510345 - 15510296
Alignment:
| Q |
228 |
agatttcccagcatttcctggagtagaaatagtagaattggaggaagtga |
277 |
Q |
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| T |
15510345 |
agatttcccaacattttttagggtagaaatagtagaattggaggaagtga |
15510296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 6610844 - 6610892
Alignment:
| Q |
229 |
gatttcccagcatttcctggagtagaaatagtagaattggaggaagtga |
277 |
Q |
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| T |
6610844 |
gatttcccagcattttctggagtagaaatagtagaatttgaggaagtga |
6610892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 26086364 - 26086426
Alignment:
| Q |
218 |
ctgacaaaacagatttcccagcatttcctggagta---gaaatagtagaattggaggaagtga |
277 |
Q |
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| T |
26086364 |
ctgacaagacagatttcccaacatttccttgggtactagaaatagtagaattggaggaagtga |
26086426 |
T |
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