View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_288 (Length: 276)
Name: NF10145A_low_288
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_288 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 31905873 - 31906106
Alignment:
| Q |
15 |
atgaagataaaatgttagtaaaaagatgaaaatacgaacaaaggttagataacataatcatcctatgtattttacaatttcaaatgttatgcattccttt |
114 |
Q |
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| T |
31905873 |
atgaagataaaatgttagtaaaaagatgaaaatacgaacaaaggttagataacataatcatcctatgtattttacaatttcaaatgttatgcattccttt |
31905972 |
T |
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| Q |
115 |
tgtatgggacatgggtggccaacaatacacttactcaacacattgtcataattcatgacacttaataatgaaaatttccaaatgcacgaatttgaaaaac |
214 |
Q |
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| T |
31905973 |
tgtatgggacatgggtggccaacaatacacttactcaacacattgtcataattcatgacactcaataatgaaaattttcaaatgcacgaatttgaaaaac |
31906072 |
T |
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| Q |
215 |
ctttaacaaagtcgaagactaaattaaaatgtta |
248 |
Q |
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| T |
31906073 |
ctttaacaaagtcgaagactaaattaaaatgtta |
31906106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 110
Target Start/End: Original strand, 31822482 - 31822512
Alignment:
| Q |
80 |
tgtattttacaatttcaaatgttatgcattc |
110 |
Q |
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| T |
31822482 |
tgtattttacaatttcaaatgttatgcattc |
31822512 |
T |
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