View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_29 (Length: 436)

Name: NF10145A_low_29
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_29
NF10145A_low_29
[»] chr4 (9 HSPs)
chr4 (100-431)||(4530760-4531089)
chr4 (1-78)||(4529991-4530068)
chr4 (87-145)||(4530046-4530104)
chr4 (2-118)||(25127167-25127286)
chr4 (4-81)||(19612844-19612923)
chr4 (58-109)||(11150603-11150653)
chr4 (58-101)||(19612809-19612852)
chr4 (58-108)||(15703789-15703838)
chr4 (73-123)||(15703789-15703838)
[»] chr5 (3 HSPs)
chr5 (1-108)||(29496909-29497017)
chr5 (56-123)||(29496698-29496765)
chr5 (61-123)||(39436928-39436989)
[»] chr2 (3 HSPs)
chr2 (1-108)||(27401588-27401696)
chr2 (56-105)||(20179902-20179951)
chr2 (58-108)||(16092607-16092656)
[»] chr6 (3 HSPs)
chr6 (6-106)||(9547844-9547945)
chr6 (73-119)||(27572929-27572975)
chr6 (1-108)||(22468952-22469061)
[»] chr8 (4 HSPs)
chr8 (1-123)||(42145554-42145677)
chr8 (58-108)||(12577133-12577182)
chr8 (58-108)||(40387807-40387856)
chr8 (59-108)||(9882573-9882621)
[»] chr3 (6 HSPs)
chr3 (58-117)||(3586246-3586304)
chr3 (58-96)||(3475919-3475956)
chr3 (58-112)||(18694490-18694543)
chr3 (58-112)||(18710009-18710062)
chr3 (58-108)||(52466285-52466334)
chr3 (58-123)||(15778180-15778245)
[»] chr1 (9 HSPs)
chr1 (3-102)||(23633166-23633266)
chr1 (58-108)||(41137828-41137877)
chr1 (56-123)||(90284-90350)
chr1 (3-46)||(9132472-9132515)
chr1 (58-105)||(23633027-23633073)
chr1 (58-100)||(52272930-52272971)
chr1 (59-108)||(23633069-23633117)
chr1 (56-108)||(9132305-9132356)
chr1 (3-54)||(41137944-41137996)
[»] scaffold0498 (1 HSPs)
scaffold0498 (3-81)||(9881-9961)
[»] chr7 (2 HSPs)
chr7 (58-108)||(11509576-11509625)
chr7 (57-108)||(22530027-22530077)
[»] scaffold0281 (2 HSPs)
scaffold0281 (56-108)||(899-950)
scaffold0281 (1-41)||(782-822)
[»] scaffold0139 (1 HSPs)
scaffold0139 (68-108)||(22678-22717)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 100 - 431
Target Start/End: Original strand, 4530760 - 4531089
Alignment:
Q  100 ataacacattgtcaaataatacatttagttacacatcttaaaatagggcattaaaaataacagttttctaccttaataatataaaacataacctaaattt 199  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4530760 ataacacat-gtcaaataatacatttagttacacatcttaaaatagtgcattaaaaataacagttttgtaccttaataatataaaacataacctaaattt 4530858  T
Q  200 atgcactggttagacgcttatctcatcttaaacactatatgcaaattcaaagattggtgtcactttaaaattaaaaaagtatattaattaatttattatc 299  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  4530859 atgcattggttagtcgcttatctcatcttaaacactatatgcaaattcaaagattagtgtcactttaaaattaaaaaagtatattaa-taatttattatc 4530957  T
Q  300 ttaaccgttgaaaccactttttgatgactatacaaatacagaggattccttcacatcatttctcatactgattagatcagtgtctcaatctcagtccttt 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4530958 ttaaccgttgaaaccactttttgatgactatacaaatacagaggattccttcacatcatttctcatgctgattagatcagtgtctcaatctcagtccttt 4531057  T
Q  400 taatctcaaaattcagtgccctcaacaccaaa 431  Q
    |||||||||||||||||||||||| |||||||    
T  4531058 taatctcaaaattcagtgccctcaccaccaaa 4531089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 4529991 - 4530068
Alignment:
Q  1 agtaatgactcaacaatgcatatttttatatgactcgacaattacatatatttagaacacatctttgtataacacatc 78  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||    
T  4529991 agtaatgactcaacaatacatatttttatatgactcgacaattacatatatttagaacacatcttcaaataacacatc 4530068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 4530046 - 4530104
Alignment:
Q  87 aacacatcttcaaataacacattgtcaaataatacatttagttacacatcttaaaatag 145  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  4530046 aacacatcttcaaataacacatcgtcaaataatacatttagttacacatcttataatag 4530104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 25127286 - 25127167
Alignment:
Q  2 gtaatgactcaacaatgcatatttttatatgactcgacaattacatatattta---gaacacatctttgtataacacatctttatatcaacacatcttca 98  Q
    |||||||||| |||||||| || |||||||||||||||||||||| || ||||    ||||||||||   |||||||||||||||||||||||||| | |    
T  25127286 gtaatgactcgacaatgcacatctttatatgactcgacaattacacatctttatattaacacatcttcaaataacacatctttatatcaacacatcctta 25127187  T
Q  99 aataacacattgtcaaataa 118  Q
    ||| |||||||  |||||||    
T  25127186 aatcacacatttccaaataa 25127167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 19612923 - 19612844
Alignment:
Q  4 aatgactcaacaatgcatatttttatatgactcgacaattacatatatttag--aacacatctttgtataacacatcttt 81  Q
    ||||||||||||||||| || ||| ||||||||||||| |||| || |||||  ||||||||||| |||| |||||||||    
T  19612923 aatgactcaacaatgcacatctttctatgactcgacaactacacatctttagataacacatctttatatagcacatcttt 19612844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 11150603 - 11150653
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaataacacatt 109  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  11150603 cacatctttatataacacatctttaaatc-acacatcttcaaataacacatt 11150653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 19612852 - 19612809
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaat 101  Q
    |||||||||||||||| |||||||||||||||||||||| ||||    
T  19612852 cacatctttgtataacgcatctttatatcaacacatctttaaat 19612809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 15703789 - 15703838
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaataacacat 108  Q
    ||||||||| ||||||||||||| | || ||||||||||||||||||||||    
T  15703789 cacatctttatataacacatcttcaaat-aacacatcttcaaataacacat 15703838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 15703789 - 15703838
Alignment:
Q  73 cacatctttatatcaacacatcttcaaataacacattgtcaaataatacat 123  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||| ||||    
T  15703789 cacatctttatat-aacacatcttcaaataacacatcttcaaataacacat 15703838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 29497017 - 29496909
Alignment:
Q  1 agtaatgactcaacaatgcatatttttatatgactcgacaattacatatatttag--aacacatctttgtataacacatctttatatcaacacatcttca 98  Q
    |||||||||||||||||||| || ||||||||||||||||| |||| || |||||  ||||||||||| ||| |||||||||||||| |||||||||  |    
T  29497017 agtaatgactcaacaatgcacatctttatatgactcgacaaatacacatctttagataacacatctttatatgacacatctttatat-aacacatctcta 29496919  T
Q  99 aataacacat 108  Q
    ||| ||||||    
T  29496918 aatcacacat 29496909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 29496765 - 29496698
Alignment:
Q  56 aacacatctttgtataacacatctttatatcaacacatcttcaaataacacattgtcaaataatacat 123  Q
    ||||||||| | |||||||||| ||||| |||||||||||||||||||| |||  | |||||||||||    
T  29496765 aacacatctatatataacacatatttatgtcaacacatcttcaaataactcatcattaaataatacat 29496698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 39436989 - 39436928
Alignment:
Q  61 atctttgtataacacatctttatatcaacacatcttcaaataacacattgtcaaataatacat 123  Q
    |||||| |||||||||||| || |||| |||||||| ||||||||||| ||||||||||||||    
T  39436989 atctttatataacacatctctaaatca-cacatctttaaataacacatcgtcaaataatacat 39436928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 27401696 - 27401588
Alignment:
Q  1 agtaatgactcaacaatgcatatttttatatgactcgacaattacatatattt--agaacacatctttgtataacacatctttatatcaacacatcttca 98  Q
    ||||| |||||||||||| | || |||||||||||||||||||||| || |||  | ||||||||||| ||| ||||||||||| ||| |||||||||||    
T  27401696 agtaacgactcaacaatgtacatctttatatgactcgacaattacacatctttaaataacacatctttatatgacacatctttaaatc-acacatcttca 27401598  T
Q  99 aataacacat 108  Q
    ||||||||||    
T  27401597 aataacacat 27401588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 20179902 - 20179951
Alignment:
Q  56 aacacatctttgtataacacatctttatatcaacacatcttcaaataaca 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20179902 aacacatatttgtataacacatctttatatcaacacatcttcaaataaca 20179951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 16092607 - 16092656
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaataacacat 108  Q
    ||||| ||| ||||||||||||||| ||||| |||||||||||||||||||    
T  16092607 cacatttttatataacacatctttaaatcaa-acatcttcaaataacacat 16092656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 9547844 - 9547945
Alignment:
Q  6 tgactcaacaatgcatatttttatatgactcgacaattacatatatttag--aacacatctttgtataacacatctttatatcaacacatcttcaaataa 103  Q
    ||||||||||||||| || |||||||||||| |||| |||| || |||||  ||||||||||| ||||||||||||||| ||| |||||||| |||||||    
T  9547844 tgactcaacaatgcacatctttatatgactcaacaactacacatctttagataacacatctttatataacacatctttaaatc-acacatctacaaataa 9547942  T
Q  104 cac 106  Q
    |||    
T  9547943 cac 9547945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 27572975 - 27572929
Alignment:
Q  73 cacatctttatatcaacacatcttcaaataacacattgtcaaataat 119  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||    
T  27572975 cacatctttatatcaacacatcttcaaataacacatcatcaaataat 27572929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 22468952 - 22469061
Alignment:
Q  1 agtaatgactcaacaatgcatatttttatatgactcgacaattacatatatttaga--acacatctttgtataacacatctttatatcaacacatcttca 98  Q
    |||||| ||| ||||||||| ||  |||||||||| || || |||| || ||||||  |||| | ||| ||| |||||||||| |||||| ||||||| |    
T  22468952 agtaataactgaacaatgcacatccttatatgactagaaaaatacacatctttagataacacgtatttatatgacacatctttgtatcaatacatcttta 22469051  T
Q  99 aataacacat 108  Q
    ||||||||||    
T  22469052 aataacacat 22469061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 42145554 - 42145677
Alignment:
Q  1 agtaatgactcaacaatgcatatttttatatgactcgacaattacatatatttag--aacacatctttgtataacacatctttatatcaacacatcttca 98  Q
    ||||||||||||| |||||| || |||| ||||||||||||||||| || |||||  |||||||||||  || ||||||||||||||  ||||||||| |    
T  42145554 agtaatgactcaataatgcacatctttagatgactcgacaattacacatctttagataacacatctttacatgacacatctttatat-tacacatcttta 42145652  T
Q  99 aataacacattgtcaaataatacat 123  Q
    ||| ||||||  |||||||| ||||    
T  42145653 aatcacacatattcaaataacacat 42145677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 12577133 - 12577182
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaataacacat 108  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||| |||||    
T  12577133 cacatctttatataacacatctttaaatc-acacatcttcaaatagcacat 12577182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 40387807 - 40387856
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaataacacat 108  Q
    ||||||||| |||||| |||||||| |||| ||||||||||||||||||||    
T  40387807 cacatctttatataactcatctttaaatca-cacatcttcaaataacacat 40387856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 9882573 - 9882621
Alignment:
Q  59 acatctttgtataacacatctttatatcaacacatcttcaaataacacat 108  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||| |||||    
T  9882573 acatctttatataacacatctttaaatc-acacatcttcaaatagcacat 9882621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 3586246 - 3586304
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaataacacattgtcaaata 117  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||||    
T  3586246 cacatctttatataacacatctttaaatca-cacatcttcaaataacacatcgtcaaata 3586304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 3475919 - 3475956
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatctt 96  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  3475919 cacatctttgtataacacatctttatatc-acacatctt 3475956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 18694543 - 18694490
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaataacacattgtc 112  Q
    ||||||||| ||||||||||||| | ||||| ||||||||||||| |||||||||    
T  18694543 cacatctttatataacacatcttgaaatcaa-acatcttcaaatagcacattgtc 18694490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 18710062 - 18710009
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaataacacattgtc 112  Q
    ||||||||| ||||||||||||| | ||||| ||||||||||||| |||||||||    
T  18710062 cacatctttatataacacatcttgaaatcaa-acatcttcaaatagcacattgtc 18710009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 52466334 - 52466285
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaataacacat 108  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||| |||||    
T  52466334 cacatctttatataacacatctttaaatc-acacatcttcaaatagcacat 52466285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 15778245 - 15778180
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaataacacattgtcaaataatacat 123  Q
    ||||||||| ||||| |||||||||||| ||||||| || |||| ||||||  |||||||| ||||    
T  15778245 cacatctttatataatacatctttatataaacacatttttaaatcacacatcttcaaataagacat 15778180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 23633266 - 23633166
Alignment:
Q  3 taatgactcaacaatgcatatttttatatgactcgacaattacatatatt--tagaacacatctttgtataacacatctttatatcaacacatcttcaaa 100  Q
    |||||||||||||||||| || ||||||||||||||||  |||| || ||  || |||||||||| | ||||||||||||||||| |||| ||||| |||    
T  23633266 taatgactcaacaatgcacatctttatatgactcgacatctacacatctttatataacacatcttcgaataacacatctttatat-aacatatctttaaa 23633168  T
Q  101 ta 102  Q
    ||    
T  23633167 ta 23633166  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 41137877 - 41137828
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaataacacat 108  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  41137877 cacatctttgtataacacatctttaaatc-acacaacttcaaataacacat 41137828  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 90284 - 90350
Alignment:
Q  56 aacacatctttgtataacacatctttatatcaacacatcttcaaataacacattgtcaaataatacat 123  Q
    ||||||||||| |||||||||| ||||||| | |||||||| | |||||||||  |||||||||||||    
T  90284 aacacatctttatataacacatttttatat-agcacatctttatataacacatcatcaaataatacat 90350  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 9132515 - 9132472
Alignment:
Q  3 taatgactcaacaatgcatatttttatatgactcgacaattaca 46  Q
    |||||||||||||||||| || ||||||||||||||||| ||||    
T  9132515 taatgactcaacaatgcacatctttatatgactcgacaaataca 9132472  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 23633073 - 23633027
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaataaca 105  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  23633073 cacatctttgtataacacatctttaaatc-acacaacttcaaataaca 23633027  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 52272930 - 52272971
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaa 100  Q
    |||||| |||||||||||||||||||||| |||||||||||||    
T  52272930 cacatcgttgtataacacatctttatatc-acacatcttcaaa 52272971  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 23633117 - 23633069
Alignment:
Q  59 acatctttgtataacacatctttatatcaacacatcttcaaataacacat 108  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||| |||||    
T  23633117 acatctttatataacacatctttaaatc-acacatcttcaaatagcacat 23633069  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 9132356 - 9132305
Alignment:
Q  56 aacacatctttgtataacacatctttatatcaacacatcttcaaataacacat 108  Q
    ||||||||||| ||||||||||||||| |||  |||| |||||||||||||||    
T  9132356 aacacatctttatataacacatctttaaatc-ccacaacttcaaataacacat 9132305  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 41137996 - 41137944
Alignment:
Q  3 taatgactcaacaa-tgcatatttttatatgactcgacaattacatatattta 54  Q
    |||||||||||||| |||| || ||||||||||||||||| |||| |||||||    
T  41137996 taatgactcaacaaatgcacatctttatatgactcgacaaatacacatattta 41137944  T

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Target: scaffold0498 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 9881 - 9961
Alignment:
Q  3 taatgactcaacaatgcatatttttatatgactcgacaattacatatatttaga--acacatctttgtataacacatcttt 81  Q
    |||||||||||||||||| || ||||| |||||||| ||||||| || ||||||  |||||||||| |||| |||||||||    
T  9881 taatgactcaacaatgcacatctttatgtgactcgataattacacatctttagatcacacatctttatatagcacatcttt 9961  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 11509625 - 11509576
Alignment:
Q  58 cacatctttgtataacacatctttatatcaacacatcttcaaataacacat 108  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  11509625 cacatctttatataacacatctttaaatc-acacatcttcaaataacacat 11509576  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 22530077 - 22530027
Alignment:
Q  57 acacatctttgtataacacatctttatatcaacacatcttcaaataacacat 108  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||||| ||||    
T  22530077 acacatctttatataacacatctttatatc-acacatattcaaataatacat 22530027  T

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Target: scaffold0281 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 899 - 950
Alignment:
Q  56 aacacatctttgtataacacatctttatatcaacacatcttcaaataacacat 108  Q
    ||||||||||| || |||||||||||| ||||| |||||||||||||||||||    
T  899 aacacatctttatagaacacatctttaaatcaa-acatcttcaaataacacat 950  T

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Target: scaffold0281; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 782 - 822
Alignment:
Q  1 agtaatgactcaacaatgcatatttttatatgactcgacaa 41  Q
    ||||||||||| |||||||| || |||||||||||||||||    
T  782 agtaatgactcgacaatgcacatctttatatgactcgacaa 822  T

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Target: scaffold0139 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 22678 - 22717
Alignment:
Q  68 tataacacatctttatatcaacacatcttcaaataacacat 108  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  22678 tataacacatctttaaatca-cacatcttcaaataacacat 22717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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