View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_290 (Length: 276)
Name: NF10145A_low_290
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_290 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 17536304 - 17536571
Alignment:
| Q |
9 |
aatgatatcgcacatctatgtgtttacttctccaatgtaaaactgggttcttggagagtttgatagttgaactattatcatagtgaatcacagttggcct |
108 |
Q |
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| T |
17536304 |
aatgatatcgcacatctatgtgtttacttctcccatgtaaaactgggttcttggagagtttgatagttgaactattatcacagtgaatcacagttggcct |
17536403 |
T |
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| Q |
109 |
ctcttgataaaaatgtaactcttcaagaattcttcttagccaaattgcttggcatgctgaagttgctgcagctatgaactccgcttcagttgtggataaa |
208 |
Q |
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| T |
17536404 |
ctcttgataaaaatgtaactcttcaagaattcttcttagccaaattgcttggcatgctgaagttgctgcagctatgaactccgcttcagttgtggataaa |
17536503 |
T |
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| Q |
209 |
gtaacaacttgttgcttctttgatgcccatgatacaacagctgatcccatcataaacacatgacctga |
276 |
Q |
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| T |
17536504 |
gtaacaacttgttgcttctttgatgcccatgatacagcagctgatcccatcataaacacatgacctga |
17536571 |
T |
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Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 45825238 - 45825505
Alignment:
| Q |
9 |
aatgatatcgcacatctatgtgtttacttctccaatgtaaaactgggttcttggagagtttgatagttgaactattatcatagtgaatcacagttggcct |
108 |
Q |
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| T |
45825238 |
aatgatatcgcacatctatgtgtttacttctcccatgtaaaactgggttcttggagagtttgatagttgaactattatcacagtgaatcacagttggcct |
45825337 |
T |
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| Q |
109 |
ctcttgataaaaatgtaactcttcaagaattcttcttagccaaattgcttggcatgctgaagttgctgcagctatgaactccgcttcagttgtggataaa |
208 |
Q |
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| T |
45825338 |
ctcttgataaaaatgtaactcttcaagaattcttcttagccaaattgcttggcatgctgaagttgctgcagctatgaactccgcttcagttgtggataaa |
45825437 |
T |
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| Q |
209 |
gtaacaacttgttgcttctttgatgcccatgatacaacagctgatcccatcataaacacatgacctga |
276 |
Q |
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| T |
45825438 |
gtaacaacttgttgcttctttgatgcccatgatacagcagctgatcccatcataaacacatgacctga |
45825505 |
T |
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