View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_292 (Length: 275)

Name: NF10145A_low_292
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_292
NF10145A_low_292
[»] chr6 (6 HSPs)
chr6 (15-127)||(22246001-22246115)
chr6 (178-275)||(22246167-22246264)
chr6 (178-275)||(15536941-15537039)
chr6 (178-275)||(14794256-14794354)
chr6 (15-93)||(14794082-14794164)
chr6 (15-112)||(15536767-15536866)
[»] chr4 (2 HSPs)
chr4 (15-116)||(648878-648981)
chr4 (178-275)||(648721-648818)
[»] chr5 (2 HSPs)
chr5 (178-274)||(15533739-15533836)
chr5 (15-116)||(15533898-15534004)
[»] chr7 (5 HSPs)
chr7 (15-116)||(17864768-17864870)
chr7 (178-268)||(42780651-42780742)
chr7 (178-275)||(17864611-17864709)
chr7 (15-69)||(42780861-42780915)
chr7 (23-65)||(18972124-18972166)
[»] chr1 (3 HSPs)
chr1 (15-116)||(13494980-13495082)
chr1 (15-68)||(21912650-21912703)
chr1 (15-51)||(1935460-1935496)
[»] scaffold0615 (1 HSPs)
scaffold0615 (15-114)||(3668-3769)
[»] scaffold0063 (2 HSPs)
scaffold0063 (178-275)||(8450-8547)
scaffold0063 (15-69)||(8663-8717)
[»] chr3 (2 HSPs)
chr3 (15-93)||(36531984-36532066)
chr3 (178-220)||(46731717-46731760)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 22246001 - 22246115
Alignment:
Q  15 gttgcttttggaactagaaacactttaagtttggggttggggtactagagaaagatgaatcactttgtgct--aaaaaaaaggatataagcatgataaaa 112  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  22246001 gttgcttttggaactagcaacactttaagtttggggtaggggtactagacaaagaagaatcactttgtgctcaaaaaaaaaggatataagcatgataaaa 22246100  T
Q  113 tatggtgatcatttg 127  Q
    |||||||||||||||    
T  22246101 tatggtgatcatttg 22246115  T

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Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 22246167 - 22246264
Alignment:
Q  178 gtgatcagtttttcaatcattaaaagttctctctagtccccggtttaaattgtgatatgatgttatggtgcatggtgtattttagatccgtaggttga 275  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22246167 gtgatcagtttttcattcattaaaagttctctctagtccccggttttaattgtgatatgatgttatggtgcacggtgtattttagatccgtaggttga 22246264  T

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Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 15536941 - 15537039
Alignment:
Q  178 gtgatcagtt-tttcaatcattaaaagttctctctagtccccggtttaaattgtgatatgatgttatggtgcatggtgtattttagatccgtaggttga 275  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15536941 gtgatcagttgtttcattcattaaaagttctctctagtccccgattttaattgtgatatgatgttatggtgcatggtatatttttgatccgtaggttga 15537039  T

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Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 14794256 - 14794354
Alignment:
Q  178 gtgatcagtt-tttcaatcattaaaagttctctctagtccccggtttaaattgtgatatgatgttatggtgcatggtgtattttagatccgtaggttga 275  Q
    |||||||||| ||||| ||| |||||||| ||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||    
T  14794256 gtgatcagttgtttcattcaataaaagttatctctagtccccgattttaattttgatatgatgttatggtgcatggtatattttagatcagtaggttga 14794354  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 14794082 - 14794164
Alignment:
Q  15 gttgcttttggaactagaaacactttaagtttggggttggggtactagagaaaga----tgaatcactttgtgctaaaaaaaa 93  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||     |||||||||||||||||||||||    
T  14794082 gttgcttttggaactagcaacactttaagtttggggtaggggtactagagaaagaaaagagaatcactttgtgctaaaaaaaa 14794164  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 15536767 - 15536866
Alignment:
Q  15 gttgcttttggaactagaaacactttaagtttggggttggggtactagagaaagatga-----atcactttgtgctaaaaaaaaggatataagcatgata 109  Q
    |||||||||||||||||||||||| ||| |||||||| |||||||||| ||||||  |     ||||||||||||||||||||   ||||||||||||||    
T  15536767 gttgcttttggaactagaaacactctaaatttggggtaggggtactagggaaagaaaagagatatcactttgtgctaaaaaaa---atataagcatgata 15536863  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 648981 - 648878
Alignment:
Q  15 gttgcttttggaactagaaacactttaagtttggggttggggtactagagaaaga----tgaatcactttgtgctaaaaaaaaggatataagcatgataa 110  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||     |||||||||||||||||||||||  |||||||||||||||    
T  648981 gttgcttttggaactagaaacactttaagtttggggtaggggtactagagaaagaaaagagaatcactttgtgctaaaaaaaa--atataagcatgataa 648884  T
Q  111 aatatg 116  Q
    ||||||    
T  648883 aatatg 648878  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 648818 - 648721
Alignment:
Q  178 gtgatcagtttttcaatcattaaaagttctctctagtccccggtttaaattgtgatatgatgttatggtgcatggtgtattttagatccgtaggttga 275  Q
    ||||||| | ||||| ||| |||||||| ||||||||||||||||| || |||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  648818 gtgatcattgtttcattcaataaaagttatctctagtccccggttttaagtgtgatatgatgctatggtgcatggtatattttagatcagtaggttga 648721  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 15533836 - 15533739
Alignment:
Q  178 gtgatcagtt-tttcaatcattaaaagttctctctagtccccggtttaaattgtgatatgatgttatggtgcatggtgtattttagatccgtaggttg 274  Q
    |||||||||| ||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  15533836 gtgatcagttgtttcattcaataaaagttatctctagtccccggttttaattgtgatatgatgttatggtgcatggtatattttagatcagtaggttg 15533739  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 15534004 - 15533898
Alignment:
Q  15 gttgcttttggaactagaaacactttaagtttggggttggggtactagagaaaga----tgaatcactttgtgct-aaaaaaaaggatataagcatgata 109  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||     ||||||||||||||| ||||||||  ||||||||||||||    
T  15534004 gttgcttttggaactagcaacactttaagtttggggtaggggtactagagaaagaaaagagaatcactttgtgctaaaaaaaaaatatataagcatgata 15533905  T
Q  110 aaatatg 116  Q
    |||||||    
T  15533904 aaatatg 15533898  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 17864870 - 17864768
Alignment:
Q  15 gttgcttttggaactagaaacactttaagtttggggttggggtactagagaaaga----tgaatcactttgtgctaaaaaaaaggatataagcatgataa 110  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||     ||||||||||||||||||||||   |||||||||||||||    
T  17864870 gttgcttttggaactagcaacactttaagtttggggtaggggtactagagaaagaaaagagaatcactttgtgctaaaaaaa---atataagcatgataa 17864774  T
Q  111 aatatg 116  Q
    ||||||    
T  17864773 aatatg 17864768  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 42780742 - 42780651
Alignment:
Q  178 gtgatcagtttttcaa-tcattaaaagttctctctagtccccggtttaaattgtgatatgatgttatggtgcatggtgtattttagatccgt 268  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||| || |||||||||||| ||||||||||| |||||||||||||||||||    
T  42780742 gtgatcagttattcaagtcattaatagttctctctagtccccggattcaattgtgatatggtgttatggtgcgtggtgtattttagatccgt 42780651  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 17864709 - 17864611
Alignment:
Q  178 gtgatcagtt-tttcaatcattaaaagttctctctagtccccggtttaaattgtgatatgatgttatggtgcatggtgtattttagatccgtaggttga 275  Q
    |||||||||| ||||| ||| ||||| |  ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  17864709 gtgatcagttgtttcattcaataaaaataatctctagtccccggttttaattgtgatatgatgttatggtgcatggtatattttagatcagtaggttga 17864611  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 42780915 - 42780861
Alignment:
Q  15 gttgcttttggaactagaaacactttaagtttggggttggggtactagagaaaga 69  Q
    ||||||||||||||||| |||| | |||||||||||| |||||||||||||||||    
T  42780915 gttgcttttggaactagcaacattctaagtttggggtaggggtactagagaaaga 42780861  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 18972166 - 18972124
Alignment:
Q  23 tggaactagaaacactttaagtttggggttggggtactagaga 65  Q
    ||||||||| |||||| |||||||||||| |||||||||||||    
T  18972166 tggaactagcaacactctaagtttggggtaggggtactagaga 18972124  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 13494980 - 13495082
Alignment:
Q  15 gttgcttttggaactagaaacactttaagtttggggttggggtactagagaaaga----tgaatcactttgtgctaaaaaaaaggatataagcatgataa 110  Q
    ||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||     ||||||||||||||||||||||   |||||||||||||||    
T  13494980 gttgcttctggaactagcaacactttaagtttggggtaggggtactagagaaagaaaagagaatcactttgtgctaaaaaaa---atataagcatgataa 13495076  T
Q  111 aatatg 116  Q
    ||||||    
T  13495077 aatatg 13495082  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 21912703 - 21912650
Alignment:
Q  15 gttgcttttggaactagaaacactttaagtttggggttggggtactagagaaag 68  Q
    |||||| |||||||||| |||||| |||||||||||| ||||||||||||||||    
T  21912703 gttgctcttggaactagcaacactctaagtttggggtaggggtactagagaaag 21912650  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 1935460 - 1935496
Alignment:
Q  15 gttgcttttggaactagaaacactttaagtttggggt 51  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  1935460 gttgcttttggaactagcaacactctaagtttggggt 1935496  T

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Target: scaffold0615 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0615
Description:

Target: scaffold0615; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 3668 - 3769
Alignment:
Q  15 gttgcttttggaactagaaacactttaagtttggggttggggtactagagaaagat----gaatcactttgtgctaaaaaaaaggatataagcatgataa 110  Q
    ||||||||||||||||| |||||||||||| |   || |||||||||||||||||     |||||||||||||||||||||||  |||||||||||||||    
T  3668 gttgcttttggaactagcaacactttaagtctcaagtaggggtactagagaaagaaaagagaatcactttgtgctaaaaaaaa--atataagcatgataa 3765  T
Q  111 aata 114  Q
    ||||    
T  3766 aata 3769  T

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Target: scaffold0063 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 8547 - 8450
Alignment:
Q  178 gtgatcagtttttcaatcattaaaagttctctctagtccccggtttaaattgtgatatgatgttatggtgcatggtgtattttagatccgtaggttga 275  Q
    ||||||||| ||||| ||| | |||||||||||||| ||||||||| ||||||||||||| ||| | |||| |||| || ||||||||||||| ||||    
T  8547 gtgatcagtgtttcattcaatcaaagttctctctagcccccggttttaattgtgatatgaggttttagtgcttggtatagtttagatccgtagtttga 8450  T

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Target: scaffold0063; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 8717 - 8663
Alignment:
Q  15 gttgcttttggaactagaaacactttaagtttggggttggggtactagagaaaga 69  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||    
T  8717 gttgcttttggaactagcaacacttcaagtttggggtaggggttctagagaaaga 8663  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 36531984 - 36532066
Alignment:
Q  15 gttgcttttggaactagaaacactttaagtttggggttggggtactagagaaaga----tgaatcactttgtgctaaaaaaaa 93  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||      ||||||||||||||||||||||    
T  36531984 gttgcttttggaactagcaacactttaagtttggggtaggggcactagagaaagagaagaaaatcactttgtgctaaaaaaaa 36532066  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 46731760 - 46731717
Alignment:
Q  178 gtgatcagtt-tttcaatcattaaaagttctctctagtccccgg 220  Q
    |||||||||| ||||| |||||||||||||||||||||||||||    
T  46731760 gtgatcagttgtttcattcattaaaagttctctctagtccccgg 46731717  T

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