View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_295 (Length: 274)
Name: NF10145A_low_295
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_295 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 9075119 - 9075243
Alignment:
| Q |
1 |
tcacaatgcacaaataaatggttttttgattctacctccaaatcacaaagcacacaactcaaattatcattaggaggaagcacattcctatgagcaagat |
100 |
Q |
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| T |
9075119 |
tcacaatgcacaaacaaatggtttgttgattctacctccaaatcacaaagcacacaactcaaattatcattaggaggaagcacattcctatgagcaagat |
9075218 |
T |
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| Q |
101 |
tcaaacgggttggaattcgattaaa |
125 |
Q |
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| T |
9075219 |
tcgaacgggttggaattcgattaaa |
9075243 |
T |
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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 248
Target Start/End: Original strand, 47337317 - 47337469
Alignment:
| Q |
96 |
aagattcaaacgggttggaattcgattaaaaagagacttccaagaaagcaccaccactatggaaggagccgggctcttccatatttggccaaacactgtt |
195 |
Q |
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| T |
47337317 |
aagattcaaacgggtcggtatacgattaagcaaagatctccaagagagcgccaccaccttagaaggagccgggctcttccaaacttggctaaagacatgt |
47337416 |
T |
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| Q |
196 |
ttctcctctaccccccaatcattccccattcctgccaacacctccaacttctt |
248 |
Q |
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| T |
47337417 |
ttctcctctaacccccactcattctcaatacccgccaccacctctagcttctt |
47337469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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