View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_296 (Length: 273)

Name: NF10145A_low_296
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_296
NF10145A_low_296
[»] scaffold0552 (1 HSPs)
scaffold0552 (3-273)||(6842-7113)
[»] chr4 (18 HSPs)
chr4 (3-273)||(6816720-6816991)
chr4 (190-273)||(6761860-6761943)
chr4 (9-174)||(6586832-6586998)
chr4 (182-269)||(6587060-6587147)
chr4 (182-273)||(6729618-6729709)
chr4 (182-269)||(5596716-5596803)
chr4 (182-273)||(6544180-6544271)
chr4 (182-273)||(6740608-6740699)
chr4 (182-272)||(6759318-6759408)
chr4 (199-273)||(6797857-6797931)
chr4 (182-272)||(6754593-6754683)
chr4 (181-273)||(6531139-6531231)
chr4 (182-273)||(6497275-6497366)
chr4 (190-272)||(6838781-6838863)
chr4 (125-174)||(6729771-6729820)
chr4 (182-273)||(6620269-6620360)
chr4 (182-273)||(6676919-6677010)
chr4 (116-154)||(6754765-6754803)
[»] scaffold0373 (1 HSPs)
scaffold0373 (182-273)||(17113-17204)
[»] scaffold0286 (1 HSPs)
scaffold0286 (182-273)||(8010-8101)


Alignment Details
Target: scaffold0552 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 273
Target Start/End: Original strand, 6842 - 7113
Alignment:
Q  3 ccgcgggctggtcaaggtcatgcggtactagctctaccaatcccacgccatcagtataacacccatctgtgggccaagtgatctgcaaatggttcaccat 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6842 ccgcaggctggtcaaggtcatgcggtactagctctaccaatcccacgccatcggtataacacccatctgtgggccaagtgatctgcaaatggttcaccat 6941  T
Q  103 tacctccctaa-ctgatttatgacttcattatcaccaccagaaacaccaacatgattatcgtcattgccagaagcaacgacatataagagagatactgta 201  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6942 tacctccctaaactgatttatgacttcattatcaccaccagaaacaccaacatgattatcgtcattgccagaagcaacgacatataagagagatactgta 7041  T
Q  202 gtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttgat 273  Q
    || |||||||||  ||||||||| ||||||| |||||||| ||||||| |||||||| ||||||||||||||    
T  7042 gtattctcaacatggaaaccctccccaaaaacaaccataaacttcactttgttaccaagttctagatttgat 7113  T

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Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 273
Target Start/End: Complemental strand, 6816991 - 6816720
Alignment:
Q  3 ccgcgggctggtcaaggtcatgcggtactagctctaccaatcccacgccatcagtataacacccatctgtgggccaagtgatctgcaaatggttcaccat 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6816991 ccgcaggctggtcaaggtcatgcggtactagctctaccaatcccacgccatcggtataacacccatctgtgggccaagtgatctgcaaatggttcaccat 6816892  T
Q  103 tacctccctaa-ctgatttatgacttcattatcaccaccagaaacaccaacatgattatcgtcattgccagaagcaacgacatataagagagatactgta 201  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6816891 tacctccctaaactgatttatgacttcattatcaccaccagaaacaccaacatgattatcgtcattgccagaagcaacgacatataagagagatactgta 6816792  T
Q  202 gtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttgat 273  Q
    || |||||||||  ||||||||| ||||||| |||||||| ||||||| |||||||| ||||||||||||||    
T  6816791 gtattctcaacatggaaaccctccccaaaaacaaccataaacttcactttgttaccaagttctagatttgat 6816720  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 6761943 - 6761860
Alignment:
Q  190 agagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttgat 273  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||    
T  6761943 agagatactgtagtcttctcaacaatgaaaccctccccaaaaacaaccataaacttcactttgttaccaggttctagatttgat 6761860  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 6586832 - 6586998
Alignment:
Q  9 gctggtcaaggtcatgcggtactagctctaccaatcccacgccatcagtataacacccatctgtgggccaagtgatctgcaaatggttcaccattacctc 108  Q
    |||||| ||||||||  |||||||||  ||||  ||||||  |||| | ||| |||||||||| ||| | | |||||||||||||||||  | || ||||    
T  6586832 gctggtgaaggtcatatggtactagcagtaccggtcccacaacatcggcataccacccatctgcgggactaatgatctgcaaatggttcggcgtttcctc 6586931  T
Q  109 -cctaactgatttatgacttcattatcaccaccagaaacaccaacatgattatcgtcattgccagaa 174  Q
     || |||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||    
T  6586932 tccaaactgattaatgacttcattatcaccactagaaacaccaacattattatcgtcatttccagaa 6586998  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 6587060 - 6587147
Alignment:
Q  182 catataagagagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatt 269  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| ||||| | |||||| |||| |||| |||||||||||||||||||    
T  6587060 catataagagagatattgtagtcttctcaacaatgaaaccctccccaaatacaaccattacctccactttgttaccaggttctagatt 6587147  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 6729709 - 6729618
Alignment:
Q  182 catataagagagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttgat 273  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||   |||||| ||||||||||| |||| |||||||||||||||||||||||    
T  6729709 catataagagagataatgtagtcttcttaacaaagaaacccttcgcaaaaacaaccataacctccactttgttaccaggttctagatttgat 6729618  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 5596716 - 5596803
Alignment:
Q  182 catataagagagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatt 269  Q
    |||| |||||||||| ||||||||||||||||  ||||||||| ||||||| ||||||||| |||||| ||||| |||||||||||||    
T  5596716 catacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaaccataacattcactttgttagcaggttctagatt 5596803  T

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Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 6544180 - 6544271
Alignment:
Q  182 catataagagagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttgat 273  Q
    ||||||||||||||| ||| |||||||| |||| ||| ||||| ||||||| || |||||||| |||| |||||||||||||||||||||||    
T  6544180 catataagagagatattgttgtcttctctacaatgaatccctccccaaaaacaatcataacctccactttgttaccaggttctagatttgat 6544271  T

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Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 6740699 - 6740608
Alignment:
Q  182 catataagagagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttgat 273  Q
    |||| |||||||||  ||||||||||||||||| ||| ||||| ||||||| |||||||| ||||||  |||||||||||||||||||||||    
T  6740699 catacaagagagatgttgtagtcttctcaacaatgaatccctccccaaaaacaaccataatcttcaccttgttaccaggttctagatttgat 6740608  T

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Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 6759408 - 6759318
Alignment:
Q  182 catataagagagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttga 272  Q
    |||||||||||||||||| |||||||||||||| ||||||||  | ||||| |||||||||||  ||| |||||||||||||||| |||||    
T  6759408 catataagagagatactgcagtcttctcaacaatgaaaccctgccgaaaaacaaccataacctcgactttgttaccaggttctaggtttga 6759318  T

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Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 6797931 - 6797857
Alignment:
Q  199 gtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttgat 273  Q
    |||||||||||||||| ||| ||||| ||||||| ||||||||||| |||| ||||||||||||||| |||||||    
T  6797931 gtagtcttctcaacaatgaatccctccccaaaaacaaccataacctccactttgttaccaggttctacatttgat 6797857  T

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Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 6754683 - 6754593
Alignment:
Q  182 catataagagagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttga 272  Q
    |||||||||||||||  |||||||| ||||||| |||||| ||  | ||||| |||||||||| |||  ||||||||||||||||||||||    
T  6754683 catataagagagatatcgtagtcttgtcaacaatgaaaccttcctccaaaattaccataacctgcacattgttaccaggttctagatttga 6754593  T

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Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 6531139 - 6531231
Alignment:
Q  181 acatataagagagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttgat 273  Q
    |||||||||||| ||| ||| |||||||| |||| ||| ||||||||||||| || || ||||| ||||   |||||||||||||||||||||    
T  6531139 acatataagagatatattgttgtcttctccacaatgaatccctctccaaaaacaagcacaacctccacttcattaccaggttctagatttgat 6531231  T

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Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 6497275 - 6497366
Alignment:
Q  182 catataagagagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttgat 273  Q
    ||||||||||||||| | | |||||||| |||| ||| ||||| ||||||| || |||||| | |||| ||||||||| |||||||||||||    
T  6497275 catataagagagataattttgtcttctctacaatgaatccctccccaaaaacaatcataacttccactttgttaccagattctagatttgat 6497366  T

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Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 6838863 - 6838781
Alignment:
Q  190 agagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttga 272  Q
    ||||||| ||||||||| ||| ||| |||||| || || |||| ||||||||||| |||| ||||||||||||||||| ||||    
T  6838863 agagatattgtagtcttgtcagcaatgaaaccttcccctaaaacaaccataacctccactttgttaccaggttctagaattga 6838781  T

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Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 6729820 - 6729771
Alignment:
Q  125 cttcattatcaccaccagaaacaccaacatgattatcgtcattgccagaa 174  Q
    ||||||||||||| |||||||||| ||||| |||||||||||||||||||    
T  6729820 cttcattatcacctccagaaacactaacattattatcgtcattgccagaa 6729771  T

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Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 6620269 - 6620360
Alignment:
Q  182 catataagagagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttgat 273  Q
    ||||||||||||||||||| || || || |||  ||| |||||  |||||| | ||||||||| |||| ||||||||||||||||| |||||    
T  6620269 catataagagagatactgttgttttttctacattgaatccctccgcaaaaacagccataacctccactgtgttaccaggttctagacttgat 6620360  T

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Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 6677010 - 6676919
Alignment:
Q  182 catataagagagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttgat 273  Q
    ||||||| ||||||| ||| ||||||||||||| ||| || || ||||| | ||| ||||||| |||  ||||||||||||| |||||||||    
T  6677010 catataaaagagataatgttgtcttctcaacaatgaatccatccccaaacacaacaataacctccaccttgttaccaggttcaagatttgat 6676919  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 6754803 - 6754765
Alignment:
Q  116 gatttatgacttcattatcaccaccagaaacaccaacat 154  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  6754803 gattgatggcttcattatcaccaccagaaacaccaacat 6754765  T

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Target: scaffold0373 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 17113 - 17204
Alignment:
Q  182 catataagagagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttgat 273  Q
    |||| |||||||||  ||||||||||||||||| ||| ||||| ||||||| |||||||| ||||||  |||||||||||||||||||||||    
T  17113 catacaagagagatgttgtagtcttctcaacaatgaatccctccccaaaaacaaccataatcttcaccttgttaccaggttctagatttgat 17204  T

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Target: scaffold0286 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 8101 - 8010
Alignment:
Q  182 catataagagagatactgtagtcttctcaacaacgaaaccctctccaaaaataaccataaccttcactctgttaccaggttctagatttgat 273  Q
    ||||||||||||||||||| || || || |||  ||| |||||  |||||| | ||||||||| |||| ||||||||||||||||| |||||    
T  8101 catataagagagatactgttgttttttctacattgaatccctccgcaaaaacagccataacctccactgtgttaccaggttctagacttgat 8010  T

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