View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_297 (Length: 273)
Name: NF10145A_low_297
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_297 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 38581041 - 38581305
Alignment:
| Q |
8 |
gtgttgtttctcgttgttcatgtttatataactgctttgtggcatttggctagtattgtgtctgtgcttgaacctctttatggttttgctgctatgaaga |
107 |
Q |
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| T |
38581041 |
gtgttgtttctcgttgttcatgtttatataactgctttgtggcatttggctagtgttgtgtctgtgcttgaacctctttatggttttgctgctatgaaga |
38581140 |
T |
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| Q |
108 |
agagttatgagttgttgaaggggagggttagatatgcttcacttttagtttgtgggtatttgtttatttgtgctgttattagtgggatgtttagcgtgat |
207 |
Q |
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| T |
38581141 |
agagttatgagttgttgaaggggagggttagatatgcttcacttttagtttgtgggtacttgtttctttgtgctgttattagtgggatgtttagcgtgat |
38581240 |
T |
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| Q |
208 |
tgtggtacatggtggtgatggctatggtgtattttctaggatttttattggtgggttcttggttg |
272 |
Q |
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| T |
38581241 |
tgtggtacatggtggtgatggctatgatgtattttctaggattttcattggtgggttcttggttg |
38581305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 6883864 - 6884125
Alignment:
| Q |
11 |
ttgtttctcgttgttcatgtttatataactgctttgtggcatttggctagtattgtgtctgtgcttgaacctctttatggttttgctgctatgaagaaga |
110 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6883864 |
ttgtttcttgttgttcatgtttatataactgctttgtggcatttggctagtgttgtgtctgtgcttgaacctctttatggttttgctgctatgaagaaga |
6883963 |
T |
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| Q |
111 |
gttatgagttgttgaaggggagggttagatatgcttcacttttagtttgtgggtatttgtttatttgtgctgttattagtgggatgtttagcgtgattgt |
210 |
Q |
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| T |
6883964 |
gttatgagttgttgaagggaagggttagatatgctgcacttttggtttgtggctatttgcttatttgtgctgttattagtggaatgtttagtgtggttgt |
6884063 |
T |
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| Q |
211 |
ggtacatggtggtgatggctatggtgtattttctaggatttttattggtgggttcttggttg |
272 |
Q |
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| T |
6884064 |
ggtacatggtggtgatggttatggcgtgttttctaggattgtcattggtgggttcttggttg |
6884125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 4098412 - 4098571
Alignment:
| Q |
20 |
gttgttcatgtttatataactgctttgtggcatttggctagtattgtgtctgtgcttgaacctctttatggttttgctgctatgaagaagagttatgagt |
119 |
Q |
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|||| ||||||||| |||||| || ||||||||||||||||||||| ||| |||| |||| | | ||||||||||| |||||||||||||||||||||| |
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| T |
4098412 |
gttgctcatgtttacataacttctccgtggcatttggctagtattgtttctatgctagaacatgtgtatggttttgcagctatgaagaagagttatgagt |
4098511 |
T |
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| Q |
120 |
tgttgaaggggagggttagatatgcttcacttttagtttgtgggtatttgtttatttgtg |
179 |
Q |
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| T |
4098512 |
tgttgaagggtagggttagttatgcttctgtttttgtttgtgggtatttgcttatctgtg |
4098571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 4181635 - 4181528
Alignment:
| Q |
20 |
gttgttcatgtttatataactgctttgtggcatttggctagtattgtgtctgtgcttgaacctctttatggttttgctgctatgaagaagagttatgagt |
119 |
Q |
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|||| ||||||||| ||||||| ||||||||||||||||||| |||| ||||||||| ||| | |||||||||||| |||| ||||||||||| ||||| |
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| T |
4181635 |
gttgctcatgtttacataactgatttgtggcatttggctagtgttgtttctgtgcttcaacatgtttatggttttgttgctctgaagaagagt--tgagt |
4181538 |
T |
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| Q |
120 |
tgttgaaggg |
129 |
Q |
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| T |
4181537 |
tgtttaaggg |
4181528 |
T |
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