View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_30 (Length: 434)
Name: NF10145A_low_30
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 432
Target Start/End: Original strand, 434147 - 434561
Alignment:
| Q |
11 |
agatggacatcatactagttcgaacgaacacggaataatgttttcaatttaacaaccaaaaacaaaccttgacttcgaattttttcactgtcttaatcat |
110 |
Q |
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||||| |||| |||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
434147 |
agatgtacattataccagtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcggattttttgactgtcttaatcat |
434246 |
T |
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| Q |
111 |
aaatctgtcatcttgggtcaagtggaagaaaa-tccacttttgccatgagatgaaagctccctgagggcagcatttccacaaatcgctaacatgtaatca |
209 |
Q |
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| T |
434247 |
aaatctgtcatcttgggtcaagtggaagaaaattccacttttgccaggagattaaagctccctgagggaagcatttccacaaatagctaacatgta---- |
434342 |
T |
|
| Q |
210 |
tcaggatccaccggaaatggcttcctaaattgtaaaagaacttt--tnnnnnnngacctaaattatactctaggaaaaagaactgacctaaactagagta |
307 |
Q |
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| T |
434343 |
-----atccaccggaaatggcttcctcaattgtaaaagaactttaaaaaaaaaagacttaaattatact-taggaaaaagaactgacctaaactagagta |
434436 |
T |
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| Q |
308 |
cataatttgaatcaaattacagtatatatttggattacacaaacttcagtttatgttaacatgtcaaataataatccttaatccataaatacacatttca |
407 |
Q |
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| T |
434437 |
cataatttgaaacaaattacagtatatatttggattacacaatcttcattttatgttaacatgtcaaatattaatccttaatccataattacacatttca |
434536 |
T |
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| Q |
408 |
gtgaaaatttgattcaattgagact |
432 |
Q |
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| T |
434537 |
gtgaaaatttgattcaattgagact |
434561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 32938626 - 32938394
Alignment:
| Q |
11 |
agatggacatcatactagttcgaacgaacacggaataatgttttcaatttaacaaccaaaaacaaaccttgacttcgaattttttcactgtcttaatcat |
110 |
Q |
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||||| || ||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |
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| T |
32938626 |
agatgtacgtcatactagtttgaacaaacatggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcggattttttcaccgtctttatcat |
32938527 |
T |
|
| Q |
111 |
aaatctgtcatcttgggtcaagtggaagaa-aatccacttttgccatgagatgaaagctccctgagggcagcatttccacaaatcgctaacatgtaatca |
209 |
Q |
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| T |
32938526 |
aaatctatcatcttgggtcaagtagaagaagcttccacttttgccaggagatgaaagctccctgagggcagcatttccgcaaatagctaacatgtaatca |
32938427 |
T |
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| Q |
210 |
tcaggatccaccggaaatggcttcctaaattgt |
242 |
Q |
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| T |
32938426 |
gcaggatccacctgaaatcgcttcctcaattgt |
32938394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 306 - 432
Target Start/End: Original strand, 43485622 - 43485748
Alignment:
| Q |
306 |
tacataatttgaatcaaattacagtatatatttggattacacaaacttcagtttatgttaacatgtcaaataataatccttaatccataaatacacattt |
405 |
Q |
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| T |
43485622 |
tacataatttgaatcaaattacagtatatatttggcttacacaaacttcaatttatggtaacatgtcaaattttaatccttaatccagaattacacagct |
43485721 |
T |
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| Q |
406 |
cagtgaaaatttgattcaattgagact |
432 |
Q |
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| T |
43485722 |
cagtgtaaatttgattcagttgagact |
43485748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 42882991 - 42883033
Alignment:
| Q |
266 |
taaattatactctaggaaaaagaac-tgacctaaactagagta |
307 |
Q |
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| T |
42882991 |
taaattatactctaggaaaaagaacttgacctaaactagagta |
42883033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 384 - 432
Target Start/End: Original strand, 47870624 - 47870672
Alignment:
| Q |
384 |
cttaatccataaatacacatttcagtgaaaatttgattcaattgagact |
432 |
Q |
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||||||||| || |||| | ||||||||||||||||||||||||||||| |
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| T |
47870624 |
cttaatccagaattacataattcagtgaaaatttgattcaattgagact |
47870672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 24524459 - 24524401
Alignment:
| Q |
75 |
aaccttgacttcgaattttttcactgtcttaatcataaatctgtcatcttgggtcaagt |
133 |
Q |
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| T |
24524459 |
aaccttgacttcagatttcttcactgtcttaatcatgaatctgtcatcttgggtcaagt |
24524401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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