View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_300 (Length: 272)
Name: NF10145A_low_300
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_300 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 19753528 - 19753267
Alignment:
| Q |
11 |
gtgttgcaattagggcacagtcataataaaagttaacacggtcaataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagc |
110 |
Q |
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| T |
19753528 |
gtgttgcaattagggcacaatcagaataaaagttaacacggtcaataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagc |
19753429 |
T |
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| Q |
111 |
atcttagctacttgctctgcatgagaaatattattaacaaccagtatgtcttcatagatactacagagcctttcccgaagttttgattgttcatcactgc |
210 |
Q |
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| T |
19753428 |
atcttagctacttgctctgcatgagaaatattattaacaaccagtatgtcttcatagatactacagagcctttcccgaagttttgattgttcatcactgc |
19753329 |
T |
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| Q |
211 |
gtatcattctaacagtaagttttgccttagttgcgtcttttgcagcagcatccaaactgtga |
272 |
Q |
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| T |
19753328 |
gtatcattctaacagtaagttttgccttagttgcgtcttttgcagtagcatccaaactgtga |
19753267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 19732998 - 19732737
Alignment:
| Q |
11 |
gtgttgcaattagggcacagtcataataaaagttaacacggtcaataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagc |
110 |
Q |
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| T |
19732998 |
gtgttgcaattagggcacaatcataataaaagttaacacggtcaataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagc |
19732899 |
T |
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| Q |
111 |
atcttagctacttgctctgcatgagaaatattattaacaaccagtatgtcttcatagatactacagagcctttcccgaagttttgattgttcatcactgc |
210 |
Q |
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| T |
19732898 |
atcttagctacttgctctgcatgagaaatattattaacaaccagtatgtcttcatagatactacagagcctttcccgaagttttgattgttcatcactgc |
19732799 |
T |
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| Q |
211 |
gtatcattctaacagtaagttttgccttagttgcgtcttttgcagcagcatccaaactgtga |
272 |
Q |
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| T |
19732798 |
gtgtcattgtaacagtaatttttgccttagttgcgtcttttgcagcagcagccaaactgtga |
19732737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 40218880 - 40219022
Alignment:
| Q |
54 |
aataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagcatcttagctacttgctctgcatgagaaatattattaacaacca |
153 |
Q |
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| T |
40218880 |
aataattatacctcggtatcacatgcataaataagatgccggtattttacagtgatcatcttaacaacctcctctgcgagaggaatattatcaaccacca |
40218979 |
T |
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| Q |
154 |
gtatgtcttcatagatactacagagcctttcccgaagttttga |
196 |
Q |
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| T |
40218980 |
gaatatcttcatagatacgacagagtctgtcccgaagttttga |
40219022 |
T |
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