View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_303 (Length: 270)

Name: NF10145A_low_303
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_303
NF10145A_low_303
[»] chr6 (27 HSPs)
chr6 (13-270)||(5688753-5689016)
chr6 (13-270)||(5177921-5178173)
chr6 (13-260)||(5279746-5279991)
chr6 (24-134)||(5242504-5242614)
chr6 (23-158)||(5126597-5126732)
chr6 (16-236)||(5065338-5065559)
chr6 (25-134)||(5427094-5427203)
chr6 (16-129)||(5346214-5346327)
chr6 (13-126)||(5398228-5398341)
chr6 (28-132)||(5100812-5100916)
chr6 (28-132)||(5135913-5136017)
chr6 (13-127)||(5180773-5180887)
chr6 (22-143)||(5098402-5098523)
chr6 (29-130)||(23127306-23127407)
chr6 (13-132)||(5156007-5156126)
chr6 (13-132)||(5372279-5372398)
chr6 (16-132)||(5351585-5351701)
chr6 (16-134)||(5352855-5352973)
chr6 (22-127)||(5283223-5283328)
chr6 (13-132)||(2939097-2939216)
chr6 (23-134)||(5072674-5072785)
chr6 (33-127)||(5439213-5439307)
chr6 (16-125)||(5253718-5253827)
chr6 (13-101)||(5334367-5334455)
chr6 (16-130)||(5124439-5124553)
chr6 (22-127)||(5256113-5256218)
chr6 (16-127)||(5448794-5448905)
[»] chr4 (7 HSPs)
chr4 (23-155)||(4122615-4122747)
chr4 (27-205)||(25569036-25569217)
chr4 (22-167)||(4132577-4132719)
chr4 (22-132)||(4319296-4319406)
chr4 (88-134)||(7884147-7884193)
chr4 (89-134)||(4346621-4346666)
chr4 (89-134)||(4362810-4362855)
[»] chr3 (4 HSPs)
chr3 (23-126)||(47985393-47985496)
chr3 (23-126)||(48003967-48004070)
chr3 (23-126)||(47994680-47994783)
chr3 (23-126)||(48013252-48013355)
[»] chr7 (1 HSPs)
chr7 (16-134)||(36212913-36213031)
[»] scaffold0294 (1 HSPs)
scaffold0294 (29-125)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 5689016 - 5688753
Alignment:
Q  13 gaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagttt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5689016 gaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagttt 5688917  T
Q  113 atctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtg---tagtggtgatgaagatgaatgctg 209  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||     
T  5688916 atctcgtatatgatgaaccaattcgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtagtggtgatgaagatgaatgcta 5688817  T
Q  210 ttaagagaggtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaa 270  Q
    ||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||||    
T  5688816 ttaagagaggtctcttctaatgcacaagattacaatgtcattgttggtagtagtggtgatgaaa 5688753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 5177921 - 5178173
Alignment:
Q  13 gaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagttt 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||    
T  5177921 gaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagttt 5178020  T
Q  113 atctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctgt-t 211  Q
    ||||||||||||||||||||||  | ||||| ||||||||||| |||||||||||||||      ||||||||||||||||||||||||||||||| | |    
T  5178021 atctcgtatatgatgaaccaattggagaaaaaatggagcaatgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgctttgt 5178114  T
Q  212 aagagaggtctcttctaatgcacaagattaccatgtcattgttagtagtggtgatgaaa 270  Q
     ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5178115 cagagaagtctcttctaatgcacaagattacaatgtcattgttagtagtggtgatgaaa 5178173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 5279746 - 5279991
Alignment:
Q  13 gaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagttt 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||    
T  5279746 gaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagttt 5279845  T
Q  113 atctcgtatatgatgaaccaatccgtgaaaatatggagcaa---tgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctg 209  Q
    ||||||||||||||||||||||  | ||||| |||||||||   || |||||||||||||||      |||||||||||||||||||||||||||||||     
T  5279846 atctcgtatatgatgaaccaattggagaaaaaatggagcaatattgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgctt 5279939  T
Q  210 t-taagagaggtctcttctaatgcacaagattaccatgtcattgttagtagt 260  Q
    | | ||||| |||||||||||||||||||| ||| |||||||||||||||||    
T  5279940 tgtcagagaagtctcttctaatgcacaagaatacaatgtcattgttagtagt 5279991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 5242614 - 5242504
Alignment:
Q  24 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 123  Q
    ||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||| ||| |||||||||||||||| |||  ||||||||||||||||    
T  5242614 gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat 5242515  T
Q  124 gatgaaccaat 134  Q
    |||||||||||    
T  5242514 gatgaaccaat 5242504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 5126732 - 5126597
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    ||||||||||||||||||||||| || |||||||||| ||| |||||  ||||||| | |||||||||||||||||||| ||| | ||||||||| ||||    
T  5126732 agagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatata 5126633  T
Q  123 tgatgaaccaatccgtgaaaatatggagcaatgtca 158  Q
    ||||||||||||  |||||| |||| ||||||||||    
T  5126632 tgatgaaccaattggtgaaactatgaagcaatgtca 5126597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 5065559 - 5065338
Alignment:
Q  16 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 115  Q
    ||||| |||||||||||||||||||| |||||| | || ||||||||  |||||  ||||||||| ||||||||| |||||||||  |||||||||||||    
T  5065559 gaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtttatc 5065460  T
Q  116 tcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctgt-taag 214  Q
    || ||||||||||||||||   ||||||   |||| | ||||| | ||||||  | |||| ||||||  |||| ||||||||| ||||||||| | || |    
T  5065459 tcatatatgatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgctttctagg 5065360  T
Q  215 agaggtctcttctaatgcacaa 236  Q
     ||| |||||||| ||||||||    
T  5065359 cgagatctcttctcatgcacaa 5065338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 5427094 - 5427203
Alignment:
Q  25 agagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatg 124  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||| ||| ||||| |||||| ||| |||  |||||||||||||||||    
T  5427094 agagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatg 5427193  T
Q  125 atgaaccaat 134  Q
    ||||||||||    
T  5427194 atgaaccaat 5427203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 5346214 - 5346327
Alignment:
Q  16 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 115  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||||||||||   |||| |||| || ||||||||||||||||| ||| || ||||||    
T  5346214 gagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatc 5346313  T
Q  116 tcgtatatgatgaa 129  Q
    || |||||||||||    
T  5346314 tcatatatgatgaa 5346327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 5398228 - 5398341
Alignment:
Q  13 gaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagttt 112  Q
    |||||||| || || ||||||||||||||||||||| |||||||||| |||||||| | |||||| || || | ||||||||||||||| ||||||||||    
T  5398228 gaagaggggcaaagggtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagttt 5398327  T
Q  113 atctcgtatatgat 126  Q
    |||| |||||||||    
T  5398328 atcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 5100916 - 5100812
Alignment:
Q  28 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 127  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| ||||    
T  5100916 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5100817  T
Q  128 aacca 132  Q
    |||||    
T  5100816 aacca 5100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 5136017 - 5135913
Alignment:
Q  28 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 127  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| ||||    
T  5136017 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5135918  T
Q  128 aacca 132  Q
    |||||    
T  5135917 aacca 5135913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 5180887 - 5180773
Alignment:
Q  13 gaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagttt 112  Q
    |||||||| ||||| ||||||||||| ||||||||  |||||||||||||||| |||| ||||||||| ||  |||||||||||||||| ||| || |||    
T  5180887 gaagagggtcagagggtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaattt 5180788  T
Q  113 atctcgtatatgatg 127  Q
    |||| ||||||||||    
T  5180787 atctggtatatgatg 5180773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 5098402 - 5098523
Alignment:
Q  22 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 121  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||||  ||  |||||| || ||| ||||||||||||| || ||| |||||||||| ||||    
T  5098402 cagagggtaatatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtat 5098501  T
Q  122 atgatgaaccaatccgtgaaaa 143  Q
    ||||||||| |||  |||||||    
T  5098502 atgatgaacaaattggtgaaaa 5098523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 23127407 - 23127306
Alignment:
Q  29 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatga 128  Q
    |||||||||||  ||||||| |||||||| |||||||||||   |||||||| || |||||| |||||||||| |||||||||||||| |||||||||||    
T  23127407 tagtatcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatga 23127308  T
Q  129 ac 130  Q
    ||    
T  23127307 ac 23127306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 5156126 - 5156007
Alignment:
Q  13 gaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagttt 112  Q
    |||||||| ||||| |||||||||||| |||||||| ||||||||||||||||   || |||||| || |    ||||||||||||||| ||||||||||    
T  5156126 gaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaacagttt 5156027  T
Q  113 atctcgtatatgatgaacca 132  Q
    |||| ||||| |||||||||    
T  5156026 atcttgtatacgatgaacca 5156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 5372279 - 5372398
Alignment:
Q  13 gaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagttt 112  Q
    |||||||| ||||| |||||||||||| |||||||| |||||||||||||| |   || |||| | || || | ||||||||||||||| |||||| |||    
T  5372279 gaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaacaattt 5372378  T
Q  113 atctcgtatatgatgaacca 132  Q
    |||||||||| |||||||||    
T  5372379 atctcgtatacgatgaacca 5372398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 5351585 - 5351701
Alignment:
Q  16 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 115  Q
    ||||| |||||  |||||||||||||||||||  ||||||||||||||||  ||| |||||| || || | || ||||||||| || |||  ||||||||    
T  5351585 gaggggcagaggttagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagtagtttatc 5351684  T
Q  116 tcgtatatgatgaacca 132  Q
    |||||||||||||||||    
T  5351685 tcgtatatgatgaacca 5351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 5352973 - 5352855
Alignment:
Q  16 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 115  Q
    ||||| |||||||||||||||||||| || ||| || ||||||| ||||| |||  |||||| || ||  ||||||| |||||||| |||||| ||||||    
T  5352973 gaggggcagagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaatttatc 5352874  T
Q  116 tcgtatatgatgaaccaat 134  Q
    | ||||||||| |||||||    
T  5352873 tggtatatgataaaccaat 5352855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 5283328 - 5283223
Alignment:
Q  22 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 121  Q
    ||||| ||| |||||||||| |||||  ||||||||||||||||  | | ||||||||| ||| |||||||||||||||| ||| || ||||||| ||||    
T  5283328 cagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtat 5283229  T
Q  122 atgatg 127  Q
    ||||||    
T  5283228 atgatg 5283223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 2939097 - 2939216
Alignment:
Q  13 gaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagttt 112  Q
    ||||| || ||||| |||||||||||| || ||||| ||||||||||||||||   || |||| | || || | || ||||||||||||  ||||| |||    
T  2939097 gaagaagggcagagggtagtatcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaattt 2939196  T
Q  113 atctcgtatatgatgaacca 132  Q
    ||||||||||||||||||||    
T  2939197 atctcgtatatgatgaacca 2939216  T

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Target: chr6; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 5072785 - 5072674
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    ||||| |||||||||||||||| ||| ||||| |||||||||||||   |||| |||| |||| |||||||||||| || |||| | |||||||| ||||    
T  5072785 agagattagtatcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatctcatata 5072686  T
Q  123 tgatgaaccaat 134  Q
     |||||| ||||    
T  5072685 cgatgaatcaat 5072674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 5439213 - 5439307
Alignment:
Q  33 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 127  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||  | || | ||||||||  || || ||| ||| |||||||||||||||||    
T  5439213 atcaagtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagcagcttatctcgtatatgatg 5439307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 5253718 - 5253827
Alignment:
Q  16 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 115  Q
    ||||| || |||||| ||| |||||| |||||| | || ||||||||| |||||  ||||||||| ||| |||||||||||||||  || ||||||||||    
T  5253718 gaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatc 5253817  T
Q  116 tcgtatatga 125  Q
    || |||||||    
T  5253818 tcatatatga 5253827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 5334367 - 5334455
Alignment:
Q  13 gaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaa 101  Q
    ||||||||  |||| ||||||||| || |||||||| |||||||||||||||| |||| |||||| || || | ||||||| |||||||    
T  5334367 gaagaggggtagagggtagtatcatgtctagaacctggtaacaaagtggaggtcgtttttgttttcgagaatgatttcattttgaagaa 5334455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 5124553 - 5124439
Alignment:
Q  16 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 115  Q
    ||||| || ||| ||||||| |||||||||||| |||| ||||||||  |||||| ||||||| | ||| | |||||||||||| | |||||| | |||     
T  5124553 gaggggcatagattagtatcgagtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtata 5124454  T
Q  116 tcgtatatgatgaac 130  Q
    |  ||||||||||||    
T  5124453 ttatatatgatgaac 5124439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 5256218 - 5256113
Alignment:
Q  22 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 121  Q
    ||||| ||| |||||||||| |||||  |||||||||||||||| || | ||||||  | || | ||||||||||||||| ||| || ||||| | ||||    
T  5256218 cagagggtaatatcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtat 5256119  T
Q  122 atgatg 127  Q
    ||||||    
T  5256118 atgatg 5256113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 5448794 - 5448905
Alignment:
Q  16 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 115  Q
    ||||| |||||  |||||||||||||||||||  | |||||||||||| | |||| |||||| || || | ||||| |||| |||| |||  ||| ||||    
T  5448794 gaggggcagaggttagtatcaagtatagaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtatatc 5448893  T
Q  116 tcgtatatgatg 127  Q
    | ||||||||||    
T  5448894 tggtatatgatg 5448905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 4122747 - 4122615
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    ||||||| ||||||| ||| |||||| || ||||||||||| |||||  ||||||||  ||| |||||||||||| ||| ||| ||||||||||| ||||    
T  4122747 agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 4122648  T
Q  123 tgatgaaccaatccgtgaaaatatggagcaatg 155  Q
    ||||||||||||| ||||||| || ||||||||    
T  4122647 tgatgaaccaatcggtgaaaaaatagagcaatg 4122615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 205
Target Start/End: Original strand, 25569036 - 25569217
Alignment:
Q  27 agtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttga---caacggtttcattgtgaagaaaacaacagtttatctcgtatat 123  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||||||      | ||||||  |||||||| ||||||||||||||||||||     
T  25569036 agtagtatcaagtatagaacctggaaacaaagtggaggttgtttttgtttttgagtggcgcagtttcaaagtgaagaatacaacagtttatctcgtatac 25569135  T
Q  124 gatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaat 205  Q
    ||||||| |||  | ||||  ||||||||| |||||  |  ||||||||||| |||||| | || |||||||||| ||||||    
T  25569136 gatgaactaattggcgaaataatggagcaaagtcaaacatcagaagaaaatgctattgtttttattggtgatgaaaatgaat 25569217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 4132719 - 4132577
Alignment:
Q  22 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 121  Q
    |||||||||||||||| ||| |||||| || ||||||| ||| |||||   |||||||  ||| |||||||||||| ||| ||| ||||||||||| |||    
T  4132719 cagagagtagtatcaaatatggaacctggtgacaaagtcgagattgtt---gtttttgggaacagtttcattgtgatgaagacagcagtttatctcatat 4132623  T
Q  122 atgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaaga 167  Q
    |||||||||||||  |||||||| ||| ||||||||| | ||||||    
T  4132622 atgatgaaccaattggtgaaaatttggggcaatgtcatgcacaaga 4132577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 4319406 - 4319296
Alignment:
Q  22 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 121  Q
    |||||||| ||| ||| ||| |||||| || |||| |||||| |||||   |||||||  ||| |||||||||||| ||| ||| ||||||||||| |||    
T  4319406 cagagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatat 4319307  T
Q  122 atgatgaacca 132  Q
    |||||||||||    
T  4319306 atgatgaacca 4319296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 7884193 - 7884147
Alignment:
Q  88 ttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 134  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||    
T  7884193 ttcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaat 7884147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 4346621 - 4346666
Alignment:
Q  89 tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 134  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  4346621 tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat 4346666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 4362810 - 4362855
Alignment:
Q  89 tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 134  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  4362810 tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat 4362855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 47985496 - 47985393
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  47985496 agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 47985397  T
Q  123 tgat 126  Q
    ||||    
T  47985396 tgat 47985393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 48004070 - 48003967
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  48004070 agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 48003971  T
Q  123 tgat 126  Q
    ||||    
T  48003970 tgat 48003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 47994783 - 47994680
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    ||||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  47994783 agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 47994684  T
Q  123 tgat 126  Q
    ||||    
T  47994683 tgat 47994680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 48013355 - 48013252
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    ||||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  48013355 agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 48013256  T
Q  123 tgat 126  Q
    ||||    
T  48013255 tgat 48013252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 36213031 - 36212913
Alignment:
Q  16 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 115  Q
    ||||| |||||| |||||||||||||||||||| || | ||| |||||||||||  ||||||||| |||  ||||||||||||||| ||| |  ||||||    
T  36213031 gaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatttatc 36212932  T
Q  116 tcgtatatgatgaaccaat 134  Q
    || | ||||||||||||||    
T  36212931 tcatttatgatgaaccaat 36212913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 7974 - 7878
Alignment:
Q  29 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatga 125  Q
    ||||||||||| |||||||  | ||||||||||||||||||  ||||||||   |||||||||||| |||  |||||||| |||||||  |||||||    
T  7974 tagtatcaagtgtagaacccggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga 7878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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