View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_307 (Length: 268)

Name: NF10145A_low_307
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_307
NF10145A_low_307
[»] chr7 (3 HSPs)
chr7 (15-268)||(3437088-3437341)
chr7 (121-246)||(14798952-14799077)
chr7 (121-246)||(15245944-15246069)
[»] chr3 (3 HSPs)
chr3 (23-268)||(46240138-46240383)
chr3 (25-251)||(23541549-23541775)
chr3 (24-197)||(30038134-30038307)
[»] chr5 (1 HSPs)
chr5 (24-200)||(29878233-29878409)
[»] chr8 (1 HSPs)
chr8 (24-182)||(3921199-3921357)
[»] chr4 (3 HSPs)
chr4 (24-200)||(6869027-6869201)
chr4 (24-179)||(4497222-4497377)
chr4 (133-246)||(11318291-11318404)
[»] scaffold0300 (1 HSPs)
scaffold0300 (24-179)||(18134-18289)
[»] chr6 (1 HSPs)
chr6 (24-179)||(24676042-24676197)
[»] scaffold0140 (1 HSPs)
scaffold0140 (145-245)||(40053-40153)
[»] chr1 (1 HSPs)
chr1 (24-127)||(36915336-36915439)
[»] scaffold0121 (1 HSPs)
scaffold0121 (133-246)||(43494-43607)
[»] chr2 (1 HSPs)
chr2 (133-246)||(18131561-18131674)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 3437088 - 3437341
Alignment:
Q  15 gacatcacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctg 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437088 gacaacacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctg 3437187  T
Q  115 cactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  3437188 cactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgaccaccatactttgtctttagat 3437287  T
Q  215 gacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437288 gacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgc 3437341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 246
Target Start/End: Original strand, 14798952 - 14799077
Alignment:
Q  121 gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc 220  Q
    ||||||||||  ||||| || | ||||||||| || |||||||| ||||| || ||||| |  |  | |||||| ||||| |||||||| || ||||| |    
T  14798952 gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc 14799051  T
Q  221 catcaaccccaataaatggcctacat 246  Q
    ||||||| ||||||||||| ||||||    
T  14799052 catcaacaccaataaatggtctacat 14799077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 246
Target Start/End: Original strand, 15245944 - 15246069
Alignment:
Q  121 gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc 220  Q
    ||||||||||  ||||| || | ||||||||| || |||||||| ||||| || ||||| |  |  | |||||| ||||| |||||||| || ||||| |    
T  15245944 gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc 15246043  T
Q  221 catcaaccccaataaatggcctacat 246  Q
    ||||||| ||||||||||| ||||||    
T  15246044 catcaacaccaataaatggtctacat 15246069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 46240383 - 46240138
Alignment:
Q  23 ttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240383 ttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagt 46240284  T
Q  123 ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagcca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  46240283 ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgacccccatactttgtctttagatgacaacca 46240184  T
Q  223 tcaaccccaataaatggcctacatccatttgtaaacccttttttgc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  46240183 tcaaccccaataaatggcctacatccatttgtaaacccttttttgc 46240138  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 23541775 - 23541549
Alignment:
Q  25 accttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagttt 124  Q
    |||||||| |||||||||||||| ||||||||  ||||  | |||||||||||||  |  | |||||||||||| ||||||||| |||| ||||  ||||    
T  23541775 accttctgttgatctgatatgaagacatatctcctatcccttccaatgtcatccattaaaagctccatgaaccatttccagctttccctacactttgttt 23541676  T
Q  125 caacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatc 224  Q
    | || || |||||||| |  ||||| || |||||||||||||| ||||||||| | || || ||||||||||||||||||||||||| |||||| |||||    
T  23541675 ctactattccaaatgccaatggaaaatattggtcatttgggtccctaccaacaactattagaagttgacccccatactttgtctttaaatgacatccatc 23541576  T
Q  225 aaccccaataaatggcctacatccatt 251  Q
     ||||||| |||||| ||||| |||||    
T  23541575 taccccaacaaatggtctacacccatt 23541549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 30038134 - 30038307
Alignment:
Q  24 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 123  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || |||| |||||||| | ||||||| |||||  || || |||||||||||    
T  30038134 taccttttgttgatctgatatgaacacatatctcttatcttcacctatatcttccatcagcaactgcgtgaaccatttccaagtttccttgcactcagtt 30038233  T
Q  124 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgaccccc 197  Q
    ||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  |||||||||||    
T  30038234 tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgaccccc 30038307  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 29878409 - 29878233
Alignment:
Q  24 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 123  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || |||| ||||||||  |||||||| ||||| ||| || |||||||||||    
T  29878409 taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt 29878310  T
Q  124 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccata 200  Q
    ||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  ||||| ||||||||    
T  29878309 tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgccccccata 29878233  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 3921199 - 3921357
Alignment:
Q  24 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 123  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || |||| ||||||||  |||||||| ||||| ||| || |||||||||||    
T  3921199 taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt 3921298  T
Q  124 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaat 182  Q
    ||||| |  ||||| || || ||||| |||||||||||||||||||| || ||||||||    
T  3921299 tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaat 3921357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 6869201 - 6869027
Alignment:
Q  24 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 123  Q
    |||||| || |||||||||||||| |||| ||||  |||||  || || || |||| |||||||| ||||||||| ||||| ||| || |||||||||||    
T  6869201 taccttttgttgatctgatatgaacacatctctt--atcttgacctatatcttccatcagcaactgcatgaaccatttccaactttccttgcactcagtt 6869104  T
Q  124 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccata 200  Q
    ||||| |  ||||| || || |||||||||||||||||||||||||| || |||||||| |  ||||| ||||||||    
T  6869103 tcaactaccccaaaagctagtggaaagtactggtcatttgggtctctccctacagcaatcaacagttggcccccata 6869027  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 4497222 - 4497377
Alignment:
Q  24 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 123  Q
    ||||||||| |||||||||||||| |||||||||||||| || || ||||||| || || || |||||| ||||| |||||||||||| | |  |||  |    
T  4497222 taccttctgttgatctgatatgaagacatatcttttatcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttcaact 4497321  T
Q  124 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagc 179  Q
    |||||||  ||||| || || ||||| ||||||||||| ||||| || ||||||||    
T  4497322 tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagc 4497377  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 11318291 - 11318404
Alignment:
Q  133 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 232  Q
    |||||||| | |||||| || || ||||||||||||||  |||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  11318291 ccaaatgctaaaggaaaatattgatcatttgggtctcttgcaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 11318390  T
Q  233 taaatggcctacat 246  Q
    |||| || ||||||    
T  11318391 taaaaggtctacat 11318404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 18289 - 18134
Alignment:
Q  24 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 123  Q
    ||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | |  ||   |    
T  18289 taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctact 18190  T
Q  124 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagc 179  Q
    |||||||  ||||| || || ||||| ||||||||||| ||||| || ||||||||    
T  18189 tcaacaacaccaaaggccaggggaaaatactggtcattggggtcccttccaacagc 18134  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 24676042 - 24676197
Alignment:
Q  24 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 123  Q
    ||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | |  ||   |    
T  24676042 taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctact 24676141  T
Q  124 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagc 179  Q
    |||||||  ||||| || || ||||| ||||||||||| ||||| || ||||||||    
T  24676142 tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagc 24676197  T

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Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 40053 - 40153
Alignment:
Q  145 ggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctac 244  Q
    ||||| ||||||||||||||||||||||||||| |||| |  ||   ||| |||||||| ||||| |||||||| |||||||| || ||||| |||||||    
T  40053 ggaaaatactggtcatttgggtctctaccaacaacaattaaaagagtacctccatacttggtcttaagatgacacccatcaactcctataaagggcctac 40152  T
Q  245 a 245  Q
    |    
T  40153 a 40153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 36915439 - 36915336
Alignment:
Q  24 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 123  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || ||||  ||||||| ||||||||| ||||| ||| || |||||||||||    
T  36915439 taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccattagcaactgcatgaaccatttccaactttccttgcactcagtt 36915340  T
Q  124 tcaa 127  Q
    ||||    
T  36915339 tcaa 36915336  T

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Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 43607 - 43494
Alignment:
Q  133 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 232  Q
    |||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  43607 ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 43508  T
Q  233 taaatggcctacat 246  Q
    |||| || ||||||    
T  43507 taaaaggtctacat 43494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 18131561 - 18131674
Alignment:
Q  133 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 232  Q
    |||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  18131561 ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 18131660  T
Q  233 taaatggcctacat 246  Q
    |||| || ||||||    
T  18131661 taaaaggtctacat 18131674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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