View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_308 (Length: 268)

Name: NF10145A_low_308
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_308
NF10145A_low_308
[»] chr7 (4 HSPs)
chr7 (9-268)||(29698430-29698689)
chr7 (110-268)||(14267103-14267261)
chr7 (191-259)||(11519173-11519241)
chr7 (114-171)||(11519296-11519353)
[»] chr3 (6 HSPs)
chr3 (192-268)||(13613996-13614072)
chr3 (137-259)||(42369835-42369953)
chr3 (137-268)||(5555596-5555723)
chr3 (115-158)||(23295014-23295057)
chr3 (191-248)||(23295143-23295199)
chr3 (23-69)||(50338913-50338959)
[»] chr2 (1 HSPs)
chr2 (137-268)||(24372751-24372880)
[»] chr6 (2 HSPs)
chr6 (191-268)||(23576337-23576414)
chr6 (113-171)||(23576473-23576531)
[»] chr4 (1 HSPs)
chr4 (191-256)||(10491435-10491499)
[»] chr5 (1 HSPs)
chr5 (194-248)||(18957659-18957712)
[»] scaffold1121 (1 HSPs)
scaffold1121 (212-268)||(457-512)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 29698430 - 29698689
Alignment:
Q  9 tcgtgttgtgcactttgtgttccagtgaataaattaaaaattaatttctatgaatttaaaaattgggacggtgtcaaggtatgctatttgctaaacatgt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  29698430 tcgtgttgtgcactttgtgttccagtgaataaattaaaaattaatttctatgaatttaaaaattgggacggtgtcaaactatgctgtttgctaaacatgt 29698529  T
Q  109 gttgaagataatattgcttattgctttagtttatgttttgatgatgtctaagatagttaggtttatttgataatgnnnnnnnatgttgattagttttagc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||| ||||||    
T  29698530 gttgaagataatattgcttattgctttagtttatgttttgatgatgtctaagatagttaggtttatttgataatgttattttatgttgattagctttagc 29698629  T
Q  209 ttagaaacttgttagagcaccctagcaaaccatgtctcatagtgtcatgtgtttctttga 268  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  29698630 ttagaaacttgttaaagcaccctagcaaaccatgtctcatagtgtcatgtatttctttga 29698689  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 110 - 268
Target Start/End: Original strand, 14267103 - 14267261
Alignment:
Q  110 ttgaagataatattgcttattgctttagtttatgttttgatgatgtctaagatagttaggtttatttgataatgnnnnnnnatgttgattagttttagct 209  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||  |||||||||||||| |||        |||||||||| |||||||    
T  14267103 ttgaagataatattgcttattcctttagtttatgtttttatgatgtctaagataactaggtttatttgatgatgttcttttttgttgattagctttagct 14267202  T
Q  210 tagaaacttgttagagcaccctagcaaaccatgtctcatagtgtcatgtgtttctttga 268  Q
    |  |||||||||| || |  |||||||||||||||||||||||||||||| ||||||||    
T  14267203 ttaaaacttgttaaagtagtctagcaaaccatgtctcatagtgtcatgtgattctttga 14267261  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 11519241 - 11519173
Alignment:
Q  191 atgttgattagttttagcttagaaacttgttagagcaccctagcaaaccatgtctcatagtgtcatgtg 259  Q
    ||||||||||| |||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||    
T  11519241 atgttgattagctttagcttagaaacttgttaaaacaccctagcaaatcatgtctcattgtgtcatgtg 11519173  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 11519353 - 11519296
Alignment:
Q  114 agataatattgcttattgctttagtttatgttttgatgatgtctaagatagttaggtt 171  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||||||| | ||||||    
T  11519353 agataatattggttactgctttagtttatgttttgacgatgtctaagatgggtaggtt 11519296  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 13614072 - 13613996
Alignment:
Q  192 tgttgattagttttagcttagaaacttgttagagcaccctagcaaaccatgtctcatagtgtcatgtgtttctttga 268  Q
    |||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||    
T  13614072 tgttgattagctttagcttagaaacttgttaaagcaccctagcaaatcatgtctcatagtgtcatgtgattctttga 13613996  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 259
Target Start/End: Complemental strand, 42369953 - 42369835
Alignment:
Q  137 gtttatgttttgatgatgtctaagatagttaggtttatttgataatgnnnnnnnatgttgattagttttagcttagaaacttgttagagcaccctagcaa 236  Q
    |||| |||||||||||||||||| |||| |||||||||||||| |||       ||||||||||| |||||||||||||||||||| |||| ||||||||    
T  42369953 gtttgtgttttgatgatgtctaa-atagctaggtttatttgatgatgttttt--atgttgattagctttagcttagaaacttgttaaagca-cctagcaa 42369858  T
Q  237 accatgtctcatagtgtcatgtg 259  Q
    |||||| || || ||||||||||    
T  42369857 accatgcctgattgtgtcatgtg 42369835  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 268
Target Start/End: Complemental strand, 5555723 - 5555596
Alignment:
Q  137 gtttatgttttgatgatgtctaagatagttaggtttatttgataatgnnnnnnnatgttgattagttttagcttagaaacttgttagagcaccctagcaa 236  Q
    |||| ||||||||| |||||||| |||| |||||||||||||| ||        ||||||||||| |||| ||||||||||||||| |||||| ||||||    
T  5555723 gtttgtgttttgattatgtctaa-atagctaggtttatttgatgat--atttttatgttgattagctttatcttagaaacttgttaaagcacc-tagcaa 5555628  T
Q  237 accatgtctcatagtgtcatgtgtttctttga 268  Q
    |||||||||||| |||||||||| ||| ||||    
T  5555627 accatgtctcattgtgtcatgtgattccttga 5555596  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 23295014 - 23295057
Alignment:
Q  115 gataatattgcttattgctttagtttatgttttgatgatgtcta 158  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  23295014 gataatattgcttattgctttagtttatattttgatgatgtcta 23295057  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 23295143 - 23295199
Alignment:
Q  191 atgttgattagttttagcttagaaacttgttagagcaccctagcaaaccatgtctcat 248  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||||    
T  23295143 atgttgattagttgtagcttagaaacttgttaaagca-cctagcaaatcatgtctcat 23295199  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 50338913 - 50338959
Alignment:
Q  23 ttgtgttccagtgaataaattaaaaattaatttctatgaatttaaaa 69  Q
    |||||||||||||||||| ||||||||||||||| | ||||||||||    
T  50338913 ttgtgttccagtgaataagttaaaaattaatttccacgaatttaaaa 50338959  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 268
Target Start/End: Original strand, 24372751 - 24372880
Alignment:
Q  137 gtttatgttttgatgatgtctaagatagttaggtttatttgataatgnnnnnnnatgttgattagttttagcttagaaacttgttagagcaccctagcaa 236  Q
    |||| |||||||||||||||||| |||| |||||||||||||| | |       |||||| |||| ||||||||||||||||||||  ||| | ||||||    
T  24372751 gtttgtgttttgatgatgtctaa-atagctaggtttatttgatgaggttcttttatgttggttagctttagcttagaaacttgttaaggcatc-tagcaa 24372848  T
Q  237 accatgtctcatagtgtcatgtgtttctttga 268  Q
    |||||||||||| |||||||||| ||||||||    
T  24372849 accatgtctcattgtgtcatgtgattctttga 24372880  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 268
Target Start/End: Complemental strand, 23576414 - 23576337
Alignment:
Q  191 atgttgattagttttagcttagaaacttgttagagcaccctagcaaaccatgtctcatagtgtcatgtgtttctttga 268  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||| ||| ||||    
T  23576414 atgttgattagctttagcttagaaacttgttaaagcaccctagcaaactatgtctcattgtgtcttgtgattccttga 23576337  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 23576531 - 23576473
Alignment:
Q  113 aagataatattgcttattgctttagtttatgttttgatgatgtctaagatagttaggtt 171  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||    
T  23576531 aagataatattgctcattgctttagtttatgttttgatgatgtctaagatggctaggtt 23576473  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 10491435 - 10491499
Alignment:
Q  191 atgttgattagttttagcttagaaacttgttagagcaccctagcaaaccatgtctcatagtgtcat 256  Q
    ||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||||| |||||||    
T  10491435 atgttgattagctttagcttagaaacttgttaaagca-cctagctaaccatgtctcattgtgtcat 10491499  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 18957659 - 18957712
Alignment:
Q  194 ttgattagttttagcttagaaacttgttagagcaccctagcaaaccatgtctcat 248  Q
    |||||||||| ||| |||||||||||||| | || ||||||||||||||||||||    
T  18957659 ttgattagttctaggttagaaacttgttaaaaca-cctagcaaaccatgtctcat 18957712  T

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Target: scaffold1121 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1121
Description:

Target: scaffold1121; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 457 - 512
Alignment:
Q  212 gaaacttgttagagcaccctagcaaaccatgtctcatagtgtcatgtgtttctttga 268  Q
    ||||||||||| ||| |||||||||||||||| |||| |||||||||| ||| ||||    
T  457 gaaacttgttaaagc-ccctagcaaaccatgtatcattgtgtcatgtgattccttga 512  T

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