View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_31 (Length: 433)

Name: NF10145A_low_31
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_31
NF10145A_low_31
[»] chr6 (2 HSPs)
chr6 (1-240)||(34691008-34691247)
chr6 (305-427)||(34690822-34690944)
[»] chr2 (11 HSPs)
chr2 (1-240)||(26988933-26989172)
chr2 (305-427)||(26988746-26988868)
chr2 (361-427)||(27076447-27076513)
chr2 (344-427)||(21432814-21432896)
chr2 (361-417)||(27028074-27028130)
chr2 (363-427)||(27099551-27099615)
chr2 (367-425)||(27151628-27151687)
chr2 (105-185)||(27028148-27028237)
chr2 (97-137)||(27076180-27076220)
chr2 (137-189)||(27076251-27076303)
chr2 (6-54)||(27076108-27076156)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 34691247 - 34691008
Alignment:
Q  1 aatataatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaatcttg 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34691247 aatacaatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaagcttg 34691148  T
Q  101 ttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgnnnnnnntaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  34691147 ttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaaaaataat 34691048  T
Q  201 aagatcgaggtctcatgctctatgacagtaagttacaatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34691047 aagatcgaggtctcatgctctatgacagtaagttacaatg 34691008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 305 - 427
Target Start/End: Complemental strand, 34690944 - 34690822
Alignment:
Q  305 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34690944 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 34690845  T
Q  405 ctgggctcaaacgatgaagggaa 427  Q
    |||||||||||||||||||||||    
T  34690844 ctgggctcaaacgatgaagggaa 34690822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 26989172 - 26988933
Alignment:
Q  1 aatataatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaatcttg 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26989172 aatacaatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaagcttg 26989073  T
Q  101 ttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgnnnnnnntaat 200  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  26989072 ttgcaaactttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaaaaataat 26988973  T
Q  201 aagatcgaggtctcatgctctatgacagtaagttacaatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26988972 aagatcgaggtctcatgctctatgacagtaagttacaatg 26988933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 305 - 427
Target Start/End: Complemental strand, 26988868 - 26988746
Alignment:
Q  305 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 404  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26988868 ttctaataaatactaattatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 26988769  T
Q  405 ctgggctcaaacgatgaagggaa 427  Q
    |||||||||||||||||||||||    
T  26988768 ctgggctcaaacgatgaagggaa 26988746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 361 - 427
Target Start/End: Original strand, 27076447 - 27076513
Alignment:
Q  361 attaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 427  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27076447 attaccttctagagaatctgtatgagtttttaaatgcatttcttctgggctcaaacgatgaagggaa 27076513  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 344 - 427
Target Start/End: Complemental strand, 21432896 - 21432814
Alignment:
Q  344 ggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 427  Q
    ||||||| |||||||| || |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  21432896 ggtgcattggttggcacat-accttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 21432814  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 27028130 - 27028074
Alignment:
Q  361 attaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27028130 attaccttctagagaatctgtatgggtttttaaatgcatttcttctgagctcaaacg 27028074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 27099551 - 27099615
Alignment:
Q  363 taccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 427  Q
    ||||||||||||||||||||| |||||| || |||||||||| |||| ||||| |||||||||||    
T  27099551 taccttctagagaatctgtataggttttcaattgcatttcttttgggttcaaaggatgaagggaa 27099615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 425
Target Start/End: Complemental strand, 27151687 - 27151628
Alignment:
Q  367 ttctagagaatctgtatgggtttttaaatgcatttcttct-gggctcaaacgatgaaggg 425  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||||||| |||||||||    
T  27151687 ttctagagaatctgtatagatttttaaatgcatttcttctggggctcaaatgatgaaggg 27151628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 27028237 - 27028148
Alignment:
Q  105 aagctttccaaaagcatttaacagacacaact---------gcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaa 185  Q
    ||||||||||||||||||||||| ||| ||||         ||||||||||||||||||||||||||||||||| |  ||||||||||||    
T  27028237 aagctttccaaaagcatttaacaaacataactaagacactagcaaaccaagaaagctgtataatgccagcatttcacgctttcagcaaaa 27028148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 27076180 - 27076220
Alignment:
Q  97 cttgttgtaagctttccaaaagcatttaacagacacaactg 137  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  27076180 cttgttgcaagctttccaaaagcatttaacaaacacaactg 27076220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 27076251 - 27076303
Alignment:
Q  137 gcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatg 189  Q
    |||||||||||||||||||||||||| || ||| |  ||||||||||||||||    
T  27076251 gcaaaccaagaaagctgtataatgcctgcgtttcacgctttcagcaaaagatg 27076303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 27076108 - 27076156
Alignment:
Q  6 aatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattc 54  Q
    |||||||| |||||||||||||||||| |||| |||| | |||||||||    
T  27076108 aatgatatatgtcttttagcaaccaaataacatgaacaactgtttattc 27076156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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