View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_329 (Length: 262)

Name: NF10145A_low_329
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_329
NF10145A_low_329
[»] chr7 (2 HSPs)
chr7 (172-253)||(27324298-27324379)
chr7 (51-127)||(27324178-27324254)
[»] chr4 (2 HSPs)
chr4 (172-253)||(28359093-28359174)
chr4 (51-127)||(28358973-28359049)
[»] chr6 (2 HSPs)
chr6 (51-127)||(3500410-3500486)
chr6 (172-253)||(3500529-3500610)


Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 27324298 - 27324379
Alignment:
Q  172 cttatatgctttggtgtttgcatttgagagggtttcacactgatagtttccaattgcatcctccatgatggttcatattgtt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27324298 cttatatgctttggtgtttgcatttgagagggtttcacactgatagttcccaattgcatcctccatgatggttcatattgtt 27324379  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 27324178 - 27324254
Alignment:
Q  51 gaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27324178 gaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt 27324254  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 28359093 - 28359174
Alignment:
Q  172 cttatatgctttggtgtttgcatttgagagggtttcacactgatagtttccaattgcatcctccatgatggttcatattgtt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28359093 cttatatgctttggtgtttgcatttgagagggtttcacactgatagttcccaattgcatcctccatgatggttcatattgtt 28359174  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 28358973 - 28359049
Alignment:
Q  51 gaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28358973 gaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt 28359049  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 3500410 - 3500486
Alignment:
Q  51 gaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3500410 gaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgttttggtgcttgctttgattgatttt 3500486  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 3500529 - 3500610
Alignment:
Q  172 cttatatgctttggtgtttgcatttgagagggtttcacactgatagtttccaattgcatcctccatgatggttcatattgtt 253  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||||||||||    
T  3500529 cttatatgctttggtgtttgcatttgagaaggtttcacactgatagttcgcaattgcatcctccatgatagttcatattgtt 3500610  T

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