View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_330 (Length: 261)
Name: NF10145A_low_330
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_330 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 37101632 - 37101889
Alignment:
| Q |
1 |
tacagggaaacaaactaatatccactcaaacaatttagcagtgttagtgatatgcaagtggaagataaaagcgccatggacattaaa-taaatgtcatag |
99 |
Q |
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| T |
37101632 |
tacagggaaacaaactaatatccactcaaacaatttagcagtgttagtgatatgcaagtggaagataaaagcgccatggacattaaaataaatgtcatag |
37101731 |
T |
|
| Q |
100 |
acattcaagcacattatctcccgttgttcatttaatatcttgagttgtgtgagatgaaagtgtacaaagggggtgttgtactaaaagttctgggcatgaa |
199 |
Q |
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| T |
37101732 |
acattcaagcacattatctcccgttgttcatttaatatcttgagctgtgtgagatgaaagtgtacaaggggggtgttgtactaaaagttctgggcatgaa |
37101831 |
T |
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| Q |
200 |
tatgagaaaaataaacaaggatttttctggcaaaaggcaataactgttgaacaccaaa |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37101832 |
tatgagaaaaataaacaaggatttttctggcaaaaggcaataactgttgaacaccaaa |
37101889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 6921305 - 6921555
Alignment:
| Q |
8 |
aaacaaactaatatccactcaaacaatttagcagtgttagtgatatgcaagtggaagataaaagcgccatggacattaaa-taaatgtcatagacattca |
106 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||||||| | ||||| ||||||| ||||||||||||||||||| |
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| T |
6921305 |
aaacaaactaatatccactcaaacaatttagcagtcttggtgatatgtatgtggaagataaaaacatcatgggcattaaagtaaatgtcatagacattca |
6921404 |
T |
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| Q |
107 |
agcacattatctcccgttgttcatttaatatcttgagttgtgtgagatgaaagtgtacaaagggggtgttgtactaaaagttctgggcatgaatatgaga |
206 |
Q |
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|||||||||||||| |||||||||| |||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| | || |||||| |
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| T |
6921405 |
agcacattatctcctcttgttcatttgatatcttgagctgggtgagatgaaagtgtacaaggggggtgttgtactaaaagttctgggtaataagatgaga |
6921504 |
T |
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| Q |
207 |
aaaataaacaaggatttttctggcaaaaggcaataactgttgaacaccaaa |
257 |
Q |
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|||||||||||||||||| ||||||||| ||| ||| |||||||||||||| |
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| T |
6921505 |
aaaataaacaaggattttgctggcaaaaagcagtaattgttgaacaccaaa |
6921555 |
T |
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