View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_339 (Length: 259)

Name: NF10145A_low_339
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_339
NF10145A_low_339
[»] chr5 (1 HSPs)
chr5 (181-250)||(276275-276344)


Alignment Details
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 276344 - 276275
Alignment:
Q  181 ttgaaaaccattacatatcaattccttactaccatacaatctagtggtaatgtgaaccatgcattcatat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  276344 ttgaaaaccattacatatcaattccttactaccatacaatctagtggtaatgtgaaccatgcattcatat 276275  T

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