View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_34 (Length: 429)
Name: NF10145A_low_34
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 7440833 - 7440462
Alignment:
| Q |
13 |
aatatatatagtattactgctatgattcagttaacaatattacctctgatgagccataatacaaccggcccttgccttctttaatgttttgcatatatta |
112 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
7440833 |
aatatatataatattactactatgattcagttaacaatattacctctgatgagccatactactaccgccccttgccttatttaatgtcttgcatatatta |
7440734 |
T |
|
| Q |
113 |
ggtatactttaacaacttagaaatcaaaattaaagataatttataacgcttgatttcctcaattcactctagccatt----taacaaagaagaaaattgt |
208 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7440733 |
ggtaaactttaacaacttagaaatcaaaattaaagataatttataacacttgatttcctcaattcactctagccattaatttaacaaagaagaaaattgt |
7440634 |
T |
|
| Q |
209 |
gatgacttataaaggagtcaaagcaatcaatacctaaacatgttttaaatcaaacttgatatcaaaacattggtgctagaaggaggattgagggcaaatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7440633 |
gatgacttataaaggagtcaaagcaatcaatacctaaacatgttttaaatcaaacttgatatcaaaacattggtgctagaaggaggattgagggcaaatg |
7440534 |
T |
|
| Q |
309 |
aaccttctaacacctaaatatctttgattgtggggtacgattccattacaaaagaaagtctaacagtcttag |
380 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7440533 |
aaccttttagcacctaaatatctttgattgtggggtacgattccattacaaaagaaagtataacagtcttag |
7440462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University