View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_340 (Length: 258)
Name: NF10145A_low_340
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_340 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 16898933 - 16898697
Alignment:
| Q |
1 |
gtgcggtttgaactagtgagttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacag |
100 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16898933 |
gtgcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacag |
16898834 |
T |
|
| Q |
101 |
gatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16898833 |
gatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatgga |
16898734 |
T |
|
| Q |
201 |
gaagacaaaattgtttcaagcaccgacagaacacgaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16898733 |
gaagacaaaattgtttcaagcaccgacagaacacgaa |
16898697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 18347448 - 18347212
Alignment:
| Q |
1 |
gtgcggtttgaactagtgagttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacag |
100 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18347448 |
gtgcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacag |
18347349 |
T |
|
| Q |
101 |
gatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatgga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347348 |
gatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcggtagtttctcatataaaattattgaccctaaagatatagtaatatgga |
18347249 |
T |
|
| Q |
201 |
gaagacaaaattgtttcaagcaccgacagaacacgaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347248 |
gaagacaaaattgtttcaagcaccgacagaacacgaa |
18347212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 34689095 - 34689050
Alignment:
| Q |
168 |
aaattattgaccctaaagatatagtaatatggagaagacaaaattg |
213 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
34689095 |
aaattattgaccttctagatatagtaatatggagaagacaaaattg |
34689050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 13237043 - 13237279
Alignment:
| Q |
1 |
gtgcggtttgaactagtgagttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacag |
100 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13237043 |
gtgcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacag |
13237142 |
T |
|
| Q |
101 |
gatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatgga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13237143 |
gatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcggtagtttctcatataaaattattgaccctaaagatatagtaatatgga |
13237242 |
T |
|
| Q |
201 |
gaagacaaaattgtttcaagcaccgacagaacacgaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13237243 |
gaagacaaaattgtttcaagcaccgacagaacacgaa |
13237279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 31 - 237
Target Start/End: Original strand, 41641583 - 41641789
Alignment:
| Q |
31 |
ggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaactgaagagtaa |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41641583 |
ggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaactgaagagtaa |
41641682 |
T |
|
| Q |
131 |
cggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatggagaagacaaaattgtttcaagcaccgacaga |
230 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41641683 |
cggcagcaagtgattgagttcggtagtttctcatataaaattattgaccctaaagatatagtaatatggagaagacaaaattgtttcaagcaccgacaga |
41641782 |
T |
|
| Q |
231 |
acacgaa |
237 |
Q |
| |
|
||||||| |
|
|
| T |
41641783 |
acacgaa |
41641789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 198561 - 198797
Alignment:
| Q |
1 |
gtgcggtttgaactagtgagttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacag |
100 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||||||| | |
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| T |
198561 |
gtgcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacgacgaaacctagaaatcgatcactgatccaatttgactacctctacgg |
198660 |
T |
|
| Q |
101 |
gatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatgga |
200 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||| |||||||||| |
|
|
| T |
198661 |
gatagacctcaacagaaaactgttgagtaacggcagcaagtgattgagttcagtagttcctcatagaaaattattgactctagagatatggtaatatgga |
198760 |
T |
|
| Q |
201 |
gaagacaaaattgtttcaagcaccgacagaacacgaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
198761 |
gaagacaaaattgtttcaagcaccgacagaacacgaa |
198797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 282366 - 282224
Alignment:
| Q |
90 |
tacctctacaggatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatat |
189 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||| |
|
|
| T |
282366 |
tacctctacgggatagacctcaacagaaaactgttgagtaacggcagcaagtgattgagttcagtagttcctcatagaaaattattgactctagagatat |
282267 |
T |
|
| Q |
190 |
agtaatatggagaagacaaaattgtttcaagcaccgacagaac |
232 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
282266 |
ggtaatatggagaagacaaaattgtttgaagcacgcacagaac |
282224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 33064716 - 33064946
Alignment:
| Q |
7 |
tttgaactagtgagttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggataga |
106 |
Q |
| |
|
||||||||| ||| ||| ||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33064716 |
tttgaactattgatttatgtaattggaagtaaccaattaagattacggcgaaatctatcaatcgatcacggatccaatttgagtacctctaccggataga |
33064815 |
T |
|
| Q |
107 |
cttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatggagaagac |
206 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | |
|
|
| T |
33064816 |
cttcaacagaaaactaaagagtaacgacaataagtgattgagttcagtagtttctcatataaattttttgaccctaaagatatagtaatatggagaaggc |
33064915 |
T |
|
| Q |
207 |
aaaattgtttcaagcaccgacagaacacgaa |
237 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |
|
|
| T |
33064916 |
aaaattgtttcaagcaccgacaaaacacgaa |
33064946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 4162364 - 4162412
Alignment:
| Q |
145 |
tgagttcagtagtttctcatataaaattattgaccctaaagatatagta |
193 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4162364 |
tgagttcagttgtttctcatataaaattattgaccctaaagatatagta |
4162412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 4174896 - 4174851
Alignment:
| Q |
145 |
tgagttcagtagtttctcatataaaattattgaccctaaagatata |
190 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4174896 |
tgagttcagttgtttctcatataaaattattgaccctaaagatata |
4174851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33420413 - 33420354
Alignment:
| Q |
1 |
gtgcggtttgaactagtgagtta-cgtaattggaagtaaccaattaggtttacggcgaaa |
59 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33420413 |
gtgcggtttgaactattgatttatcgtaattggaagtaaccaattagatttacggcgaaa |
33420354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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