View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_341 (Length: 258)

Name: NF10145A_low_341
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_341
NF10145A_low_341
[»] chr7 (13 HSPs)
chr7 (27-239)||(9187120-9187337)
chr7 (60-239)||(24271944-24272128)
chr7 (27-241)||(21986815-21987034)
chr7 (27-241)||(18411552-18411772)
chr7 (27-242)||(21643932-21644152)
chr7 (27-241)||(4860627-4860846)
chr7 (27-241)||(16882822-16883041)
chr7 (27-241)||(24263296-24263515)
chr7 (172-241)||(49089733-49089802)
chr7 (175-241)||(25407431-25407497)
chr7 (175-241)||(44012628-44012694)
chr7 (174-242)||(7072067-7072135)
chr7 (204-239)||(25353371-25353406)
[»] chr1 (4 HSPs)
chr1 (56-241)||(47100791-47100982)
chr1 (27-241)||(41396134-41396353)
chr1 (175-241)||(2397326-2397392)
chr1 (175-241)||(9523745-9523811)
[»] chr4 (8 HSPs)
chr4 (27-241)||(16625966-16626185)
chr4 (27-241)||(18858471-18858690)
chr4 (27-242)||(5145803-5146023)
chr4 (27-241)||(9226374-9226593)
chr4 (208-241)||(4567356-4567389)
chr4 (208-241)||(16634508-16634541)
chr4 (205-238)||(47564782-47564815)
chr4 (204-240)||(15314336-15314372)
[»] chr3 (14 HSPs)
chr3 (27-241)||(1308766-1308985)
chr3 (27-238)||(3325514-3325730)
chr3 (27-241)||(32478235-32478454)
chr3 (35-241)||(2674193-2674404)
chr3 (27-241)||(8514989-8515208)
chr3 (108-241)||(16262338-16262476)
chr3 (204-241)||(16459481-16459518)
chr3 (204-241)||(29912080-29912117)
chr3 (175-242)||(6305327-6305394)
chr3 (175-242)||(10096904-10096971)
chr3 (175-242)||(10203790-10203857)
chr3 (175-238)||(54190528-54190591)
chr3 (208-241)||(10610908-10610941)
chr3 (208-241)||(22624110-22624143)
[»] scaffold0006 (2 HSPs)
scaffold0006 (27-241)||(403-622)
scaffold0006 (27-241)||(8559-8778)
[»] chr8 (9 HSPs)
chr8 (35-241)||(26299276-26299487)
chr8 (27-241)||(18867643-18867862)
chr8 (27-241)||(10686237-10686456)
chr8 (27-241)||(35743284-35743503)
chr8 (175-241)||(21039448-21039514)
chr8 (204-241)||(28892781-28892818)
chr8 (199-238)||(16596894-16596933)
chr8 (175-242)||(28329911-28329978)
chr8 (204-242)||(16755387-16755425)
[»] chr5 (11 HSPs)
chr5 (27-241)||(28836196-28836415)
chr5 (27-241)||(24557557-24557776)
chr5 (27-241)||(24598589-24598808)
chr5 (27-241)||(33789251-33789470)
chr5 (27-238)||(27447718-27447934)
chr5 (27-241)||(37558575-37558794)
chr5 (27-241)||(43595016-43595235)
chr5 (27-241)||(43627810-43628029)
chr5 (27-241)||(31398965-31399184)
chr5 (154-221)||(31302308-31302374)
chr5 (204-241)||(25447504-25447541)
[»] scaffold0197 (1 HSPs)
scaffold0197 (27-241)||(16282-16501)
[»] chr2 (6 HSPs)
chr2 (27-241)||(19347173-19347392)
chr2 (58-239)||(25393812-25393998)
chr2 (182-241)||(20052865-20052924)
chr2 (175-241)||(17934101-17934167)
chr2 (204-241)||(22715361-22715398)
chr2 (175-242)||(2738221-2738288)
[»] chr6 (6 HSPs)
chr6 (27-241)||(14739545-14739764)
chr6 (27-241)||(33333049-33333268)
chr6 (28-238)||(24433296-24433511)
chr6 (175-242)||(13880755-13880822)
chr6 (175-241)||(22349069-22349135)
chr6 (175-241)||(25943686-25943752)
[»] scaffold0078 (1 HSPs)
scaffold0078 (54-241)||(34932-35124)
[»] scaffold0256 (1 HSPs)
scaffold0256 (175-241)||(18343-18409)
[»] scaffold0209 (1 HSPs)
scaffold0209 (204-241)||(1271-1308)
[»] scaffold0023 (1 HSPs)
scaffold0023 (175-241)||(49304-49370)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 27 - 239
Target Start/End: Complemental strand, 9187337 - 9187120
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| ||||| ||| ||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  9187337 gatggacatctattgatcaaataggcagcagttgtcactgcttcaccctagaaacttttaggtaacccagctcctagaagcatacacctcacacgctcca 9187238  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    |||||      |||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  9187237 aaagggtcctattcatgagttcagcaagaccatttt-gttgcggtgttctcggtacggtcctatgcctcttgattcctttcaacctgcaaaactcattaa 9187139  T
Q  221 attgctctgaaacaaactc 239  Q
    |||||| ||||||||||||    
T  9187138 attgctatgaaacaaactc 9187120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 24271944 - 24272128
Alignment:
Q  60 gtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctccaaaagg------ttcatgcgttcagcgagaccat 153  Q
    |||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||      |||||||||||||| |||||||    
T  24271944 gtcactacttcaccccagaaactcttaggtaacccagctcctagaagcatacaccttacacgctccaaaagggtcctattcatgcgttcagcaagaccat 24272043  T
Q  154 ttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactc 239  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24272044 ttt-gttgcggtgttctcggtacggttctatgcctcttgattccttttaacctgcaaaactcattaaattgctctgaaacaaactc 24272128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 21986815 - 21987034
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || ||||||||||||||||| ||| |||||||  |||| | |||||||||||||| |||||||||||||||||| |    
T  21986815 gatggacatctattgatcaaataagcagcagttgtcactgcttcacccgagaaacttttaggaagcccagctcctagaatcatacacctcacacgctcaa 21986914  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    |||||      |||||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  21986915 aaagggtcctattcatgcgttcagcaagaccatttt-gttgtggtattctcggtacggtcctatgcctcttgattcattttaacctgcaaaactcattaa 21987013  T
Q  221 attgctctgaaacaaactcca 241  Q
    |||||||||||||||||||||    
T  21987014 attgctctgaaacaaactcca 21987034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 18411552 - 18411772
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || ||||||||| |||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  18411552 gatggacatctattgatcaaataagcagccgttgtcactacttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 18411651  T
Q  127 aaaggttc------atgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgc-aaaactcatta 219  Q
    ||||  ||      ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||| |||| ||||||    
T  18411652 aaagagtcctatacatgcgttcagcaagaccatttt-gttgcggtgttctcggtacggtcctatgcctcttgattcctttcaacctgcaaaaaatcatta 18411750  T
Q  220 aattgctctgaaacaaactcca 241  Q
    ||||||||||||||||||||||    
T  18411751 aattgctctgaaacaaactcca 18411772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 242
Target Start/End: Original strand, 21643932 - 21644152
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||| ||||||||||| ||| || |||||||||||||    
T  21643932 gatggacatctattgatcaaataagcagccgttgtcacagcttcaccccagaaactcttaggtaacctagctcctagaatcatgcatctcacacgctcca 21644031  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       |||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  21644032 aaagagtcctattcatgcgttcagcaagaccatttt-gttgcggtgttttcggtacggtcctatgcctcttgattcctttaaacctgcaaaactcattaa 21644130  T
Q  221 attgctctgaaacaaactccaa 242  Q
    ||||||||||||||||||||||    
T  21644131 attgctctgaaacaaactccaa 21644152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 4860627 - 4860846
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||    
T  4860627 gatggacatctattgatcaaataagcagccgttgtcactgcttcaccctagaaactcttaggtaacccagctcctagaatcatacacctcacacgcttca 4860726  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || |||||||||| |||| |||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  4860727 aaagagtcttattcatgcgttctgcaagaccatttt-gttgtggtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 4860825  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  4860826 actgctctgaaacaaactcca 4860846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 16882822 - 16883041
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  16882822 gatggacatctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 16882921  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    |||||      ||||||||||| || |||||||||| |||| |||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  16882922 aaagggtcctattcatgcgttccgcaagaccatttt-gttgaggtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 16883020  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  16883021 actgctctgaaacaaactcca 16883041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 24263515 - 24263296
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  24263515 gatggacatctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 24263416  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || |||||||||| ||||||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  24263415 aaagagtcctattcatgcgttccgcaagaccatttt-gttgcggtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 24263317  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  24263316 actgctctgaaacaaactcca 24263296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 49089733 - 49089802
Alignment:
Q  172 ggtacggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  49089733 ggtacggtcctatgcctcttgattccttttaacctgcaaaactcattaaattgctctgaaataaactcca 49089802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 25407497 - 25407431
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    ||||| ||||||||||| || ||||    |||||||||||||||||| |||||||||||||||||||    
T  25407497 acggttctatgcctctttatacctttcttcctgcaaaactcattaaactgctctgaaacaaactcca 25407431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 44012628 - 44012694
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    ||||| ||||||||||| || |||| |  |||||||||||||||||| | |||||||||||||||||    
T  44012628 acggttctatgcctctttataccttttttcctgcaaaactcattaaacttctctgaaacaaactcca 44012694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 7072135 - 7072067
Alignment:
Q  174 tacggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactccaa 242  Q
    |||||| ||||||||||| || ||||    |||||||||||||||||| || |||||||||||||||||    
T  7072135 tacggttctatgcctctttatacctttcttcctgcaaaactcattaaactgttctgaaacaaactccaa 7072067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 25353406 - 25353371
Alignment:
Q  204 cctgcaaaactcattaaattgctctgaaacaaactc 239  Q
    |||||||||||||||||| |||||||||||||||||    
T  25353406 cctgcaaaactcattaaactgctctgaaacaaactc 25353371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 56 - 241
Target Start/End: Complemental strand, 47100982 - 47100791
Alignment:
Q  56 agttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctccaaaagg-------ttcatgcgttcagcgag 148  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |       |||||||||||||| ||    
T  47100982 agttgtcactgcttcaccctagaaaatcttaggtaacccagctcctagaagcatacacctcacacgctccaaaaagggtcatattcatgcgttcagcaag 47100883  T
Q  149 accatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47100882 accatttta-ttgcggtgttctcggtacggtcctatgcctcttgattccttttaacctgcaaaactcattaaattgctctgaaacaaactcca 47100791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 41396134 - 41396353
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| | | |||||||  ||||||||||||||||||||| ||||||||||||||||||||    
T  41396134 gatggacatctattgatcaaataagcagccgttgtcacggcttcactccagaaactattaggtaacccagctcctagaatcatacacctcacacgctcca 41396233  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || |||||||||| |||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  41396234 aaagagtcctattcatgcgttccgcaagaccatttt-gttgcggtgttctcggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 41396332  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  41396333 actgctctgaaacaaactcca 41396353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 2397326 - 2397392
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    ||||| ||||||||||| || |||| |  |||||||||||||||||| |||||||||||||||||||    
T  2397326 acggttctatgcctctttataccttttttcctgcaaaactcattaaactgctctgaaacaaactcca 2397392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 9523811 - 9523745
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    ||||| ||||||||||| || ||||    |||||||||||||||||| |||||||||||||||||||    
T  9523811 acggttctatgcctctttatacctttcttcctgcaaaactcattaaactgctctgaaacaaactcca 9523745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 16626185 - 16625966
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || |||||||||||| |||| ||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  16626185 gatggacatctattgatcaaataagcagcagttgtcactacttcaccccagaaactcttaggtaacccagctcctaggagcatacacctcacacgctcca 16626086  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    |||||      |||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  16626085 aaagggtcctattcatgcgttcagcaagactatttt-gttgcagtgttctcggtacggtcctatgcctcttgattcctttaaacctgcaaaactcattaa 16625987  T
Q  221 attgctctgaaacaaactcca 241  Q
    |||||||||||||||||||||    
T  16625986 attgctctgaaacaaactcca 16625966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 18858471 - 18858690
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  18858471 gatggacatctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 18858570  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || |||||||||| ||||||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  18858571 aaagagtcctattcatgcgttccgcaagaccatttt-gttgcggtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 18858669  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  18858670 actgctctgaaacaaactcca 18858690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 242
Target Start/End: Original strand, 5145803 - 5146023
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || | ||||||||||  ||| ||| |||||||| |||| | |||| ||||||||| ||||||||||||||||||||    
T  5145803 gatggacatctattgatcaaataagcagtagttgtcactagttcaccccagaaactcttaggaagcccaactcctagaatcatacacctcacacgctcca 5145902  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    |||||      ||||||| |||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  5145903 aaagggtcatattcatgcattcagcaagaccatttt-gttgcggtgttctcggtacggtcatatgcctcttgattccttttaacgtgcaaaactcattaa 5146001  T
Q  221 attgctctgaaacaaactccaa 242  Q
    |||||||||||| |||||||||    
T  5146002 attgctctgaaataaactccaa 5146023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 9226593 - 9226374
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || |  |||||||| ||||| ||| |||||||||| ||||||||  ||||||||| ||||||||||||||||||||    
T  9226593 gatggacatctattgatcaaataagcagtcgttgtcacggcttcaccccagaaactcatcggtaacccgtctcctagaatcatacacctcacacgctcca 9226494  T
Q  127 aaag------gttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||      |||||||||||| || |||||||||| ||||||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  9226493 aaagagtcctgttcatgcgttccgcaagaccatttt-gttgcggtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 9226395  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  9226394 actgctctgaaacaaactcca 9226374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 4567389 - 4567356
Alignment:
Q  208 caaaactcattaaattgctctgaaacaaactcca 241  Q
    |||||||||||||| |||||||||||||||||||    
T  4567389 caaaactcattaaactgctctgaaacaaactcca 4567356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 16634541 - 16634508
Alignment:
Q  208 caaaactcattaaattgctctgaaacaaactcca 241  Q
    |||||||||||||| |||||||||||||||||||    
T  16634541 caaaactcattaaactgctctgaaacaaactcca 16634508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 47564815 - 47564782
Alignment:
Q  205 ctgcaaaactcattaaattgctctgaaacaaact 238  Q
    ||||||||||||||||| ||||||||||||||||    
T  47564815 ctgcaaaactcattaaactgctctgaaacaaact 47564782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 15314372 - 15314336
Alignment:
Q  204 cctgcaaaactcattaaattgctctgaaacaaactcc 240  Q
    |||||||||||||||||| |||||| |||||||||||    
T  15314372 cctgcaaaactcattaaactgctctaaaacaaactcc 15314336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 1308766 - 1308985
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || ||||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  1308766 gatggacatctattgatcaaataagcagcagttgtcactgcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 1308865  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    |||||      |||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| ||  ||| |||||||||||||||    
T  1308866 aaagggtcctattcatgcgttcagcaagaccatttt-gttgcgatgttctcggtacggtcctatgcctcttgattcttttcaacatgcaaaactcattaa 1308964  T
Q  221 attgctctgaaacaaactcca 241  Q
    |||||||||||||||||||||    
T  1308965 attgctctgaaacaaactcca 1308985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 27 - 238
Target Start/End: Complemental strand, 3325730 - 3325514
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || |||||||||||| |||| ||||| |||||| |||||||||||||||||||||||||||||||||||| |||||    
T  3325730 gatggacatctattgatcaaataagcagcagttgtcactacttcaccctaaaaactcttaggtaacccagctcctagaagcatacacctcacacactcca 3325631  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    |||||      |||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  3325630 aaagggtcatattcatgcgttcagcaaaaccatttt-gttgcggtgttctcggtacggtcatatgcctcttgattcctttcaacctgcaaaactcattaa 3325532  T
Q  221 attgctctgaaacaaact 238  Q
    |||| |||||||||||||    
T  3325531 attgatctgaaacaaact 3325514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 32478235 - 32478454
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  32478235 gatggacatctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 32478334  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    |||||      ||||||||||| || |||||||||| |||| |||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  32478335 aaagggtcctattcatgcgttccgcaagaccatttt-gttgaggtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 32478433  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  32478434 actgctctgaaacaaactcca 32478454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 35 - 241
Target Start/End: Complemental strand, 2674404 - 2674193
Alignment:
Q  35 tctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctccaaaagg--- 131  Q
    |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||        
T  2674404 tctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctccaaaagagtc 2674305  T
Q  132 ---ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctct 228  Q
       ||||||||||| || |||||||||| ||||||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||| ||||||    
T  2674304 ctattcatgcgttccgcaagaccatttt-gttgcggtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaaactgctct 2674206  T
Q  229 gaaacaaactcca 241  Q
    |||||||||||||    
T  2674205 gaaacaaactcca 2674193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 8514989 - 8515208
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  8514989 gatggacatctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 8515088  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || |||||||||| |||| |||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  8515089 aaagagtcctattcatgcgttccgcaagaccatttt-gttgaggtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 8515187  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  8515188 actgctctgaaacaaactcca 8515208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 16262338 - 16262476
Alignment:
Q  108 atacacctcacacgctccaaaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttat 201  Q
    |||||||||||||||||||| |||      ||||||| |||| | |||||||||| ||| | |||||||||||||||||||||||||||||||||||| |    
T  16262338 atacacctcacacgctccaagagggtcatattcatgcattcaacaagaccatttt-gttacagtgttctcggtacggtcctatgcctcttgattcctttt 16262436  T
Q  202 aacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  16262437 aacctgcaaaactcattaaattactctgaaacaaactcca 16262476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 16459518 - 16459481
Alignment:
Q  204 cctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    |||||||||||||||||| |||||||||||||||||||    
T  16459518 cctgcaaaactcattaaactgctctgaaacaaactcca 16459481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 29912080 - 29912117
Alignment:
Q  204 cctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    |||||||||||||||||| |||||||||||||||||||    
T  29912080 cctgcaaaactcattaaactgctctgaaacaaactcca 29912117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 6305394 - 6305327
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactccaa 242  Q
    ||||| ||||||||||| || ||||    |||||||||||||||||| || |||||||||||||||||    
T  6305394 acggttctatgcctctttatacctttcttcctgcaaaactcattaaactgttctgaaacaaactccaa 6305327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 10096904 - 10096971
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactccaa 242  Q
    ||||| ||||||||||| || ||||    |||||||||||||||||| || |||||||||||||||||    
T  10096904 acggttctatgcctctttatacctttcttcctgcaaaactcattaaactgttctgaaacaaactccaa 10096971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 10203790 - 10203857
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactccaa 242  Q
    ||||| ||||||||||| || ||||    |||||||||||||||||| || |||||||||||||||||    
T  10203790 acggttctatgcctctttatacctttcttcctgcaaaactcattaaactgttctgaaacaaactccaa 10203857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 54190591 - 54190528
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaact 238  Q
    ||||| ||||||||||| || ||||    |||||||||||||||||| ||||||||||||||||    
T  54190591 acggttctatgcctctttatacctttcttcctgcaaaactcattaaactgctctgaaacaaact 54190528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 10610908 - 10610941
Alignment:
Q  208 caaaactcattaaattgctctgaaacaaactcca 241  Q
    |||||||||||||| |||||||||||||||||||    
T  10610908 caaaactcattaaactgctctgaaacaaactcca 10610941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 22624110 - 22624143
Alignment:
Q  208 caaaactcattaaattgctctgaaacaaactcca 241  Q
    |||||||||||||| |||||||||||||||||||    
T  22624110 caaaactcattaaactgctctgaaacaaactcca 22624143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 403 - 622
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||| | |||||  || ||||||||||||||||| | | |||| ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  403 gatggacatctattaatcaaataagcagcagttgtcactgcttcactccagaatctcttaggtaacccaactcctagaagcatacacctcacacgctcca 502  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    |||||      |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||    
T  503 aaagggtcatattcatgcgttcagcaagaccatttt-gttgcggtgttctcggtacggtcgtatgcctcttgattccttttaacctgccaaactcattaa 601  T
Q  221 attgctctgaaacaaactcca 241  Q
    |||||||||||||||||||||    
T  602 attgctctgaaacaaactcca 622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 8559 - 8778
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||| | |||||  || ||||||||||||||||| | | |||| ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  8559 gatggacatctattaatcaaataagcagcagttgtcactgcttcactccagaatctcttaggtaacccaactcctagaagcatacacctcacacgctcca 8658  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    |||||      |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||    
T  8659 aaagggtcatattcatgcgttcagcaagaccatttt-gttgcggtgttctcggtacggtcgtatgcctcttgattccttttaacctgccaaactcattaa 8757  T
Q  221 attgctctgaaacaaactcca 241  Q
    |||||||||||||||||||||    
T  8758 attgctctgaaacaaactcca 8778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 26299276 - 26299487
Alignment:
Q  35 tctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctccaaaagg--- 131  Q
    |||||||| |||||  || || ||||||||| |||| ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||       
T  26299276 tctattgatcaaataagcagctgttgtcactacttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctccaaaagggtc 26299375  T
Q  132 ---ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctct 228  Q
       |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |    
T  26299376 ctattcatgcgttcagcaagaccatttt-gttgcggtgttctcggtacggtcctatgcctcttgattcctttcaacctgcaaaactcattaaattgcttt 26299474  T
Q  229 gaaacaaactcca 241  Q
    |||||||||||||    
T  26299475 gaaacaaactcca 26299487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 18867862 - 18867643
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  18867862 gatggacatctattgatcaaataagcagccgttgtcactgcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 18867763  T
Q  127 aaaggttc------atgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||  ||      ||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  18867762 aaagagtcctatttatgcgttcagcaagaccatttt-gttgcggtgttctcggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 18867664  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  18867663 actgctctgaaacaaactcca 18867643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 10686456 - 10686237
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  10686456 gatggacatctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 10686357  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || |||||||||| ||||||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  10686356 aaagagtcctattcatgcgttccgcaagaccatttt-gttgcggtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 10686258  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  10686257 actgctctgaaacaaactcca 10686237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 35743284 - 35743503
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||| ||||||    
T  35743284 gatggacatctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacatgctcca 35743383  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || || ||||||| ||||||||||| | |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  35743384 aaagtgtcctattcatgcgttccgcaaggccatttt-gttgcggtgttattggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 35743482  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  35743483 actgctctgaaacaaactcca 35743503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 21039514 - 21039448
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    ||||| ||||||||||| || |||| |  |||||||||||||||||| |||||||||||||||||||    
T  21039514 acggttctatgcctctttataccttttttcctgcaaaactcattaaactgctctgaaacaaactcca 21039448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 28892818 - 28892781
Alignment:
Q  204 cctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    |||||||||||||||||| |||||||||||||||||||    
T  28892818 cctgcaaaactcattaaactgctctgaaacaaactcca 28892781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 16596933 - 16596894
Alignment:
Q  199 tataacctgcaaaactcattaaattgctctgaaacaaact 238  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  16596933 tataacttgtaaaactcattaaattgctctgaaacaaact 16596894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 28329978 - 28329911
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactccaa 242  Q
    ||||| ||||||||||| || ||||    |||||||||||||||||| || |||||||||||||||||    
T  28329978 acggttctatgcctctttatacctttcttcctgcaaaactcattaaactgttctgaaacaaactccaa 28329911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 16755387 - 16755425
Alignment:
Q  204 cctgcaaaactcattaaattgctctgaaacaaactccaa 242  Q
    |||||||||||||||||| || |||||||||||||||||    
T  16755387 cctgcaaaactcattaaactgttctgaaacaaactccaa 16755425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 28836196 - 28836415
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  ||  |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  28836196 gatggacatctattgatcaaataagcaacagttgtcactgcttcaccctagaaactcttaggtaacccagctcctagaagcatacacctcacacactcca 28836295  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    |||||      |||||| ||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||| |  |||||||||||||||||||    
T  28836296 aaagggtcatattcatgtgttcagcaagaccatttt-gttgcggtgttctcggtacagtcctatgcctcttgaatccattcaacctgcaaaactcattaa 28836394  T
Q  221 attgctctgaaacaaactcca 241  Q
    |||||||||||||||||||||    
T  28836395 attgctctgaaacaaactcca 28836415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 24557776 - 24557557
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || |||||||||| |||||| |||||||||||| |||||||||||||||||  ||||||||||||||| |||||||    
T  24557776 gatggacatctattgatcaaataagcagcagttgtcattgcttcaccctagaaactcttaggtaacccagctccttaaagcatacacctcacccgctcca 24557677  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    |||||      |||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||    
T  24557676 aaagggtcatattcatgtgttcagcaagaccatttt-gttgcggtgttctcagtacggtcctatgcctcttgattcctttcaacctgcaaaactcattaa 24557578  T
Q  221 attgctctgaaacaaactcca 241  Q
    |||||||| ||||||||||||    
T  24557577 attgctcttaaacaaactcca 24557557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 24598808 - 24598589
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || |||||||||| |||||| |||||||||||| |||||||||||||||||  ||||||||||||||| |||||||    
T  24598808 gatggacatctattgatcaaataagcagcagttgtcattgcttcaccctagaaactcttaggtaacccagctccttaaagcatacacctcacccgctcca 24598709  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    |||||      |||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||    
T  24598708 aaagggtcatattcatgtgttcagcaagaccatttt-gttgcggtgttctcagtacggtcctatgcctcttgattcctttcaacctgcaaaactcattaa 24598610  T
Q  221 attgctctgaaacaaactcca 241  Q
    |||||||| ||||||||||||    
T  24598609 attgctcttaaacaaactcca 24598589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 33789251 - 33789470
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  33789251 gatggacatctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 33789350  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || |||||||||| ||||||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  33789351 aaagtgtcctattcatgcgttccgcaagaccatttt-gttgcggtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 33789449  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  33789450 actgctctgaaacaaactcca 33789470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 27 - 238
Target Start/End: Original strand, 27447718 - 27447934
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| |||||| |||||||||||||    
T  27447718 gatggacatctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacatctcacacgctcca 27447817  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || |||||||||| |||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  27447818 aaagagtcctattcatgcgttccgcaagaccatttt-gttgcggtgttctcggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 27447916  T
Q  221 attgctctgaaacaaact 238  Q
    | ||||||||||||||||    
T  27447917 actgctctgaaacaaact 27447934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 37558794 - 37558575
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  37558794 gatggacatctattgatcaaataagcagctgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 37558695  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || |||||||||| |||| |||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  37558694 aaagagtcctattcatgcgttccgcaagaccatttt-gttgaggtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 37558596  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  37558595 actgctctgaaacaaactcca 37558575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 43595016 - 43595235
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| |||||| |||||||||||||    
T  43595016 gatggacatctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacatctcacacgctcca 43595115  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || |||||||||| |||| ||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  43595116 aaagagtcctattcatgcgttccgcaagaccatttt-gttgtggtgttctcggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 43595214  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  43595215 actgctctgaaacaaactcca 43595235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 43627810 - 43628029
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| |||||| |||||||||||||    
T  43627810 gatggacatctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacatctcacacgctcca 43627909  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || |||||||||| |||| ||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  43627910 aaagagtcctattcatgcgttccgcaagaccatttt-gttgtggtgttctcggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 43628008  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  43628009 actgctctgaaacaaactcca 43628029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 31399184 - 31398965
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  31399184 gatggacatctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 31399085  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || || ||||||| ||||| ||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  31399084 aaagtgtcctattcatgcgttccgcaaggccatttt-gttgcagtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 31398986  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  31398985 actgctctgaaacaaactcca 31398965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 31302308 - 31302374
Alignment:
Q  154 ttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaaa 221  Q
    |||| |||||||||||| ||||||||  ||||||||||||| |||| |||| |||||| |||||||||    
T  31302308 ttttattgcggtgttcttggtacggtt-tatgcctcttgataccttttaacatgcaaatctcattaaa 31302374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 25447541 - 25447504
Alignment:
Q  204 cctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  25447541 cctgaaaaactcattaaactgctctgaaacaaactcca 25447504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 16501 - 16282
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  16501 gatggacatctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 16402  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || |||||||||| ||||||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  16401 aaagagtcctattcatgcgttccgcaagaccatttt-gttgcggtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 16303  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  16302 actgctctgaaacaaactcca 16282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 19347173 - 19347392
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  19347173 gatggacatctattgatcaaataagcagccgttgtcacggcttcaccccagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 19347272  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || || ||||||| ||||||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  19347273 aaagtgtcctattcatgcgttccgcaaggccatttt-gttgcggtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 19347371  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  19347372 actgctctgaaacaaactcca 19347392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 58 - 239
Target Start/End: Original strand, 25393812 - 25393998
Alignment:
Q  58 ttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctccaaaagg------ttcatgcgttcagcgagacc 151  Q
    ||||||||||||| ||| ||  |||| ||||||||||| ||||||||| ||||||||||||||||||||||||       |||||||||||||| |||||    
T  25393812 ttgtcactgcttcaccccagttactcttaggtaacccatctcctagaatcatacacctcacacgctccaaaagagtcttattcatgcgttcagcaagacc 25393911  T
Q  152 atttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactc 239  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  25393912 atttt-gttgcggtgttctcggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaaattgctctgaaacaaactc 25393998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 20052865 - 20052924
Alignment:
Q  182 tatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    |||||||||| || |||| | |||||| |||||||||||| |||||||||||||||||||    
T  20052865 tatgcctctttatacctttttacctgctaaactcattaaactgctctgaaacaaactcca 20052924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 17934167 - 17934101
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    ||||| ||||||||||| || ||||    |||||||||||||||||| |||||||||||||||||||    
T  17934167 acggttctatgcctctttatacctttcttcctgcaaaactcattaaactgctctgaaacaaactcca 17934101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 22715361 - 22715398
Alignment:
Q  204 cctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    |||||||||||||||||| |||||||||||||||||||    
T  22715361 cctgcaaaactcattaaactgctctgaaacaaactcca 22715398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 2738288 - 2738221
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactccaa 242  Q
    ||||| ||||||||||| || ||||    |||||||||||||||||| || |||||||||||||||||    
T  2738288 acggttctatgcctctttatacctttcttcctgcaaaactcattaaactgttctgaaacaaactccaa 2738221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 14739764 - 14739545
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || ||  ||||||| ||||| ||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||||    
T  14739764 gatggacatctattgatcaaataagcagcctttgtcacagcttcaccccagagactcttaggtaacccagctcctagaatcatacacctcacacgctcca 14739665  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       |||||| |||| || |||||||||| |||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  14739664 aaagagtcctattcatgtgttccgcaagaccatttt-gttgcggtgttctcggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 14739566  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  14739565 actgctctgaaacaaactcca 14739545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 33333268 - 33333049
Alignment:
Q  27 gatggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctcca 126  Q
    ||||||| |||||||| |||||  || || |||||||| ||||| ||  |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  33333268 gatggacatctattgatcaaataagcagccgttgtcacggcttcacctcagaaactcttaggtaacccagctcctagaatcatacacctcacacgctcca 33333169  T
Q  127 aaagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaa 220  Q
    ||||       ||||||||||| || |||||||||| |||| |||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  33333168 aaagagtcctattcatgcgttccgcaagaccatttt-gttgaggtgttcttggtacggttctatgcctcttgattcctttcaacctgcaaaactcattaa 33333070  T
Q  221 attgctctgaaacaaactcca 241  Q
    | |||||||||||||||||||    
T  33333069 actgctctgaaacaaactcca 33333049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 24433511 - 24433296
Alignment:
Q  28 atggacctctattgaccaaattggcggcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctccaa 127  Q
    |||||| |||||||| | |||  || |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||  |||||||    
T  24433511 atggacatctattgatccaataagcagcagttgtcactacttcaccctagaaactcttaggtaacccagctcctagaagcatacacctcacctgctccaa 24433412  T
Q  128 aagg------ttcatgcgttcagcgagaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaaa 221  Q
    ||||      |||||||||| ||| |||||| |||||||| |||||||| |||||||| |||||||||||||||  ||  ||||| ||||||||||||||    
T  24433411 aagggtcctattcatgcgttaagcaagacca-ttttgttgtggtgttcttggtacggttctatgcctcttgatttatttcaacctacaaaactcattaaa 24433313  T
Q  222 ttgctctgaaacaaact 238  Q
    ||||| |||||||||||    
T  24433312 ttgctttgaaacaaact 24433296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 13880822 - 13880755
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactccaa 242  Q
    ||||| ||||||||||| || ||||    |||||||||||||||||| || |||||||||||||||||    
T  13880822 acggttctatgcctctttatacctttcttcctgcaaaactcattaaactgttctgaaacaaactccaa 13880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 22349069 - 22349135
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    ||||| |||| |||||| || |||| |  |||||||||||||||||| |||| ||||||||||||||    
T  22349069 acggttctattcctctttataccttttttcctgcaaaactcattaaactgctttgaaacaaactcca 22349135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 25943752 - 25943686
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    ||||| ||||||||||| || ||||    ||| |||||||||||||| |||||||||||||||||||    
T  25943752 acggttctatgcctctttatacctttcttcctacaaaactcattaaactgctctgaaacaaactcca 25943686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 241
Target Start/End: Original strand, 34932 - 35124
Alignment:
Q  54 gcagttgtcactgcttccccctagaaactcataggtaacccagctcctagaagcatacacctcacacgctccaaaagg------ttcatgcgttcagcga 147  Q
    |||||| |||||| ||| ||  |||||||||| ||||||||| |||||||| ||||||||||||| |||||||||| |      |||||  ||||||| |    
T  34932 gcagttttcactgattcacctcagaaactcattggtaacccatctcctagatgcatacacctcacccgctccaaaacggtcgtattcatatgttcagcaa 35031  T
Q  148 gaccatttttgttgcggtgttctcggtacggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    ||||| ||||||||||||||||| ||||||||| | | ||||||||||||||   |  | ||||||| ||||||||||||||||||||||||||    
T  35032 gacca-ttttgttgcggtgttcttggtacggtcatgttcctcttgattcctttctatatccaaaactgattaaattgctctgaaacaaactcca 35124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 18409 - 18343
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    ||||| ||||||||||| || || | |  |||||||||||||||||| |||||||||||||||||||    
T  18409 acggttctatgcctctttataccctttttcctgcaaaactcattaaactgctctgaaacaaactcca 18343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 1271 - 1308
Alignment:
Q  204 cctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    |||||||||||||||||| |||||||||||||||||||    
T  1271 cctgcaaaactcattaaactgctctgaaacaaactcca 1308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 49304 - 49370
Alignment:
Q  175 acggtcctatgcctcttgattccttataacctgcaaaactcattaaattgctctgaaacaaactcca 241  Q
    ||||| ||||||||||| || ||||    |||||||||||||||||| |||| ||||||||||||||    
T  49304 acggttctatgcctctttatacctttcttcctgcaaaactcattaaactgctatgaaacaaactcca 49370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University