View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_345 (Length: 257)
Name: NF10145A_low_345
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_345 |
 | |
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| [»] chr4 (2 HSPs) |
| |
|
| [»] chr1 (7 HSPs) |
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| [»] chr7 (14 HSPs) |
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| [»] chr5 (6 HSPs) |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 50004903 - 50005138
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50004903 |
tggacggacagcccaaatagttatgttcatttgatatttaagtcattctctcttttaaaaattgtatataattatgttcatttgttttgttacttctaat |
50005002 |
T |
|
| Q |
122 |
taaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgttatgcttttattccac |
221 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50005003 |
taaaatgaaggaaaaacaataatcaaagtggttgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgttatgcttttattcccc |
50005102 |
T |
|
| Q |
222 |
acttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
50005103 |
acttttgaaacccttttgcttatggttgcattgtga |
50005138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 16029878 - 16030108
Alignment:
| Q |
26 |
cggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaattaaa |
125 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16029878 |
cggacaacccaaatagttatgttcattaggtatttaagtcattctctcttctaaaaattatatataattatgttcatttgttttgttacttctaattaaa |
16029977 |
T |
|
| Q |
126 |
atgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgttatgcttttattccacactt |
225 |
Q |
| |
|
||||||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16029978 |
atgaaggaaaaacaaaaatcgaagtggtcgtg-ttcatcattgtttcttaactcttgttctcctataatgttaaaaatgttatgcttttattccccactt |
16030076 |
T |
|
| Q |
226 |
ttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
16030077 |
ttgaaacccttttgcttatggttgcattgtga |
16030108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 26844449 - 26844217
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
121 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26844449 |
tggacggacaacccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
26844350 |
T |
|
| Q |
122 |
taaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgttatgcttttattccac |
221 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
26844349 |
taaaatgaaggaaaaacaaaaatcaaagtgatcgtg-ttcatcattgtttcttaactcttgttctcctgtaatattaaaaatgttatgcttttattcccc |
26844251 |
T |
|
| Q |
222 |
acttttgaaacccttttgcttatggttgcattgt |
255 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||| |
|
|
| T |
26844250 |
acttttaaaacccttttgcttatagttacattgt |
26844217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 257
Target Start/End: Complemental strand, 50737761 - 50737618
Alignment:
| Q |
114 |
cttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgttatgcttt |
213 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
50737761 |
cttctgattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctatgatgttaaaaatgttatgcttt |
50737662 |
T |
|
| Q |
214 |
tattccacacttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
50737661 |
tattccccacttatgaaacccttttgtttatggttgcattgtga |
50737618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 114 - 257
Target Start/End: Original strand, 50775094 - 50775237
Alignment:
| Q |
114 |
cttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgttatgcttt |
213 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
50775094 |
cttctgattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctatgatgttaaaaatgttatgcttt |
50775193 |
T |
|
| Q |
214 |
tattccacacttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
50775194 |
tattccccacttatgaaacccttttgtttatggttgcattgtga |
50775237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 50737891 - 50737791
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
121 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
50737891 |
tggacggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatatacttatgttcatatgttttgttacttctaat |
50737792 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
50737791 |
t |
50737791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 50774964 - 50775064
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
121 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
50774964 |
tggacggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatatacttatgttcatatgttttgttacttctaat |
50775063 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
50775064 |
t |
50775064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 45565928 - 45566168
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
121 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45565928 |
tggacggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
45566027 |
T |
|
| Q |
122 |
taaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattg-tttcttaactcttgttctcctgtaatgttaaaaatgttatgcttttattcca |
220 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||| ||| ||||||||| ||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
45566028 |
taaaatgaaggaaaaacaaaaatcaaagtgatcgtgtttcatcattgtttttttaactcttcttctcctatgatgttaaaaatgttatgcttttattccc |
45566127 |
T |
|
| Q |
221 |
cacttttgaaac----ccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45566128 |
cacttttgaaaccctaccttttgcttatggttgcattgtga |
45566168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 4221047 - 4221271
Alignment:
| Q |
24 |
gacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaatta |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4221047 |
gacggacagcccaaatagttatgttcatttgatatttaagtcattctctcttctaaaaattgtatataattatgttcatttattttgttacttctaatta |
4221146 |
T |
|
| Q |
124 |
aaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgttatgcttttattccacac |
223 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
4221147 |
aaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctg---------aaatgttatgcttttattccccac |
4221237 |
T |
|
| Q |
224 |
ttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| |
|
|
| T |
4221238 |
ttttaaaacccttttgcttatagttgcattgtga |
4221271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 48470244 - 48470093
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
48470244 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctatgatgttaaaaatgt |
48470145 |
T |
|
| Q |
206 |
tatgcttttattccacacttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48470144 |
tatgcttttactccccacttttgaaacccttttgcttatggttgcattgtga |
48470093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 17331559 - 17331714
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
17331559 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctatgatgttaaaaatgt |
17331658 |
T |
|
| Q |
206 |
tatgcttttattccacacttttgaaac----ccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17331659 |
tatgcttttattccccacttttgaaaccctaccttttgcttatggttgcattgtga |
17331714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 113 - 257
Target Start/End: Complemental strand, 49229118 - 49228974
Alignment:
| Q |
113 |
acttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgttatgctt |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||||||||||||||| |
|
|
| T |
49229118 |
acttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcatgtttcatcattgtttcttgactcttgttctcctatgatgttaaaaatgttatgctt |
49229019 |
T |
|
| Q |
213 |
ttattccacacttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49229018 |
ttatttcccacttttgaaacccttttgcttatggttgcattgtga |
49228974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 48470362 - 48470265
Alignment:
| Q |
25 |
acggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaatt |
122 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48470362 |
acggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaatt |
48470265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 17331438 - 17331538
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
121 |
Q |
| |
|
|||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17331438 |
tggacggacaacccacgtaattatgttcatttggtatttaagtcattctctcttttaaaaattgtatataattatgtttatttgttttgttacttctaat |
17331537 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
17331538 |
t |
17331538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 41202077 - 41202228
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
41202077 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctatgatgttaaaaatgt |
41202176 |
T |
|
| Q |
206 |
tatgcttttattccacacttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41202177 |
tatgcttttattccccacttttgaaacccttttgcttatggttgcattgtga |
41202228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 17511124 - 17510973
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
17511124 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctatgatgttaaaaatgt |
17511025 |
T |
|
| Q |
206 |
tatgcttttattccacacttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17511024 |
tatgcttttattcctcacttttgaaatccttttgcttatggttgcattgtga |
17510973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 17542090 - 17542241
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
17542090 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctatgatgttaaaaatgt |
17542189 |
T |
|
| Q |
206 |
tatgcttttattccacacttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17542190 |
tatgcttttattcctcacttttgaaatccttttgcttatggttgcattgtga |
17542241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 17475540 - 17475389
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
17475540 |
ttttgttatttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctatgatattaaaaatgt |
17475441 |
T |
|
| Q |
206 |
tatgcttttattccacacttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17475440 |
tatgcttttattcctcacttttgaaacccttttgcttatggttgcattgtga |
17475389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 17577674 - 17577825
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
17577674 |
ttttgttatttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctatgatattaaaaatgt |
17577773 |
T |
|
| Q |
206 |
tatgcttttattccacacttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17577774 |
tatgcttttattcctcacttttgaaacccttttgcttatggttgcattgtga |
17577825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 49112820 - 49112975
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
49112820 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttctcaactcttgttctcctatgatgttaaaaatgt |
49112919 |
T |
|
| Q |
206 |
tatgcttttattccacacttttgaaac----ccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49112920 |
tatgcttttattccccacttttgaaactctaccttttgcttatggttgcattgtga |
49112975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 4267023 - 4267123
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
121 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4267023 |
tggacggacagcccaaataattatgttcatttgatatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttttaat |
4267122 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
4267123 |
t |
4267123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 41201960 - 41202060
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
121 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41201960 |
tggacggacaatccaaataattatgttcatttgatatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
41202059 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
41202060 |
t |
41202060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 49112704 - 49112800
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttcta |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
49112704 |
tggacggacagcccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatatgattatgtt-atttgttttgttacttcta |
49112800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 17475657 - 17475557
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
121 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17475657 |
tggacggacagcccaactaattatgttcatttggtatttaagttattctttcttctaaaaattgtatatacttatgttcatttgttttgttacttctaat |
17475558 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
17475557 |
t |
17475557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 17577557 - 17577657
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
121 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17577557 |
tggacggacagcccaactaattatgttcatttggtatttaagttattctttcttctaaaaattgtatatacttatgttcatttgttttgttacttctaat |
17577656 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
17577657 |
t |
17577657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 4267140 - 4267239
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
4267140 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctatgatgttaaaaatgt |
4267239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 17511241 - 17511144
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttcta |
119 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17511241 |
tggacggacagcccaactaattatgttcattcggtatttaagttattctttcttctaaaaattgtatatacttatgttcatttgttttgttacttcta |
17511144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 17541973 - 17542070
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttcta |
119 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17541973 |
tggacggacagcccaactaattatgttcattcggtatttaagttattctttcttctaaaaattgtatatacttatgttcatttgttttgttacttcta |
17542070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 3436548 - 3436397
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||||||||||||| |
|
|
| T |
3436548 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaacttttgttctcctatgatgttaaaaatgt |
3436449 |
T |
|
| Q |
206 |
tatgcttttattccacacttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3436448 |
tatgcttttattccccacttttgaaacccttttgcttatggttgcattgtga |
3436397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 20338313 - 20338162
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
20338313 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactctcgttctcctatgatgttaaaaatgt |
20338214 |
T |
|
| Q |
206 |
tatgcttttattccacacttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20338213 |
tatgcttttattccccacttttgaaacccttttgcttatggttgcattgtga |
20338162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 40917703 - 40917552
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| || |
|
|
| T |
40917703 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctatgatgttaaaaacgt |
40917604 |
T |
|
| Q |
206 |
tatgcttttattccacacttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40917603 |
tatgcttttattccccacttttgaaacccttttgcttatagttgcattgtga |
40917552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 3436664 - 3436569
Alignment:
| Q |
24 |
gacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttcta |
119 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3436664 |
gacggacagtccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttcta |
3436569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 40917823 - 40917723
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggta-tttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaa |
120 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40917823 |
tggacggacagcccaaataattatgttcatttggtactttaagtcattctatcttctaaaaattgtatataattatgttcatttgttttgttacttctaa |
40917724 |
T |
|
| Q |
121 |
t |
121 |
Q |
| |
|
| |
|
|
| T |
40917723 |
t |
40917723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 20338429 - 20338331
Alignment:
| Q |
24 |
gacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaatt |
122 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
20338429 |
gacggatagcccaaataattatgttcatttgatatttaagtcattctctcttctaaaaattgtacatacttatgttcatttgttttgttacttctaatt |
20338331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 9471105 - 9471256
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
9471105 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcatgtttcatcattgtttcttgactcttgttctcctatgatgttaaaaatgt |
9471204 |
T |
|
| Q |
206 |
tatgcttttattccacacttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9471205 |
tatgcttttattccccacttttgaaacccttttgcttatggttgcattgtga |
9471256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 17920992 - 17921127
Alignment:
| Q |
122 |
taaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgttatgcttttattccac |
221 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | |
|
|
| T |
17920992 |
taaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctataatgttaaaaatgttatgtttttattcccc |
17921091 |
T |
|
| Q |
222 |
acttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
17921092 |
acttttgaaacccttttgcttatggttgcattgtga |
17921127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 9470993 - 9471087
Alignment:
| Q |
29 |
acagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaatta |
123 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9470993 |
acagtccaaataattatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaatta |
9471087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 17920926 - 17920993
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtata |
89 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
17920926 |
tggacggacaatccaaatagttatgttcatttggtatttaagtcattctcacttctaaatattgtata |
17920993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 106 - 252
Target Start/End: Complemental strand, 12272044 - 12271898
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
12272044 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcatgtttcatcattgtttcttaactcttgttctcctatgatgttaaaaatgt |
12271945 |
T |
|
| Q |
206 |
tatgcttttattccacacttttgaaacccttttgcttatggttgcat |
252 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12271944 |
tatgcttttattccccacttttgaaacccttttgcttatggttgcat |
12271898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 12076473 - 12076322
Alignment:
| Q |
106 |
ttttgttacttctaattaaaatgaaggaataacaaaaatcaaagtggctgtgtttcatcattgtttcttaactcttgttctcctgtaatgttaaaaatgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
12076473 |
ttttgttacttctaattaaaatgaaggaaaaacaaaaatcaaagtggtcgtgtttcatcattgtttcttaactcttgttctcctatgatgttaaaaatgt |
12076374 |
T |
|
| Q |
206 |
tatgcttttattccacacttttgaaacccttttgcttatggttgcattgtga |
257 |
Q |
| |
|
||||| |||||||| | |||||||||||||||||||| |||||||||||||| |
|
|
| T |
12076373 |
tatgcatttattccccgcttttgaaacccttttgcttctggttgcattgtga |
12076322 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 12272164 - 12272064
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
121 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12272164 |
tggacggacagtccaaataattttgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
12272065 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
12272064 |
t |
12272064 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 12076589 - 12076489
Alignment:
| Q |
22 |
tggacggacagcccaaatagttatgttcatttggtatttaagtcattctctcttctaaaaattgtatataattatgttcatttgttttgttacttctaat |
121 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12076589 |
tggacggacaacccaaataattatgttcatttggtatttaagtcatttgctcttctaaaaattgtatataattatgttcatttgttttgttacttttaat |
12076490 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
12076489 |
t |
12076489 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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