View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_357 (Length: 252)

Name: NF10145A_low_357
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_357
NF10145A_low_357
[»] chr1 (4 HSPs)
chr1 (7-162)||(46208523-46208678)
chr1 (7-103)||(48962610-48962714)
chr1 (192-232)||(46208453-46208493)
chr1 (214-243)||(46209389-46209418)
[»] chr5 (1 HSPs)
chr5 (53-103)||(17367989-17368039)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 46208678 - 46208523
Alignment:
Q  7 tttggtgttaggtctctgtggtagccactttgatcctcatgcttcgtcttggccgcttcgaacattgcgagatgagaattgacggattgttgttgggtag 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46208678 tttggtgttaggtctttgtggtagccactttgatcctcatgcttcgtcttcgccgcttcgaacattgcgagatgagaattgacggattgttgttgggtag 46208579  T
Q  107 tggatgaagaatggtggatatggtgttgagagcaatcatgttccaattcaaatcca 162  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46208578 tggatgaagaatggtggatatggtgttgagagcagtcatgttccaattcaaatcca 46208523  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 48962714 - 48962610
Alignment:
Q  7 tttggtgttaggtctctgtggtagccactttgatcctcatgcttcgt---------cttggccgcttcgaacattgcgagatgagaattgacggattgtt 97  Q
    ||||||||||||||| |||||||||||||||||| | ||||||||||         ||| ||||||||||  ||||||||||||||||||||||||||||    
T  48962714 tttggtgttaggtct-tgtggtagccactttgattcccatgcttcgttccattcgtctttgccgcttcgaggattgcgagatgagaattgacggattgtt 48962616  T
Q  98 gttggg 103  Q
    ||||||    
T  48962615 gttggg 48962610  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 46208493 - 46208453
Alignment:
Q  192 aaattgtgagttacacacatgacattttcatttatttttaa 232  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  46208493 aaattgtgagttacacacatcgcattttcatttatttttaa 46208453  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 46209389 - 46209418
Alignment:
Q  214 cattttcatttatttttaattcaaaaatta 243  Q
    ||||||||||||||||||||||||||||||    
T  46209389 cattttcatttatttttaattcaaaaatta 46209418  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 17368039 - 17367989
Alignment:
Q  53 tcttggccgcttcgaacattgcgagatgagaattgacggattgttgttggg 103  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  17368039 tcttcgccgcttcgaggattgcgagatgagaattgacggattgttgttggg 17367989  T

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