View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_358 (Length: 252)

Name: NF10145A_low_358
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_358
NF10145A_low_358
[»] chr4 (2 HSPs)
chr4 (3-238)||(25109594-25109828)
chr4 (4-118)||(3938201-3938315)
[»] chr5 (3 HSPs)
chr5 (4-118)||(39045195-39045309)
chr5 (10-118)||(7280100-7280208)
chr5 (7-58)||(41701214-41701265)
[»] chr1 (2 HSPs)
chr1 (124-233)||(45516590-45516699)
chr1 (124-233)||(44093782-44093891)
[»] chr3 (3 HSPs)
chr3 (124-233)||(49147877-49147986)
chr3 (4-118)||(3423246-3423360)
chr3 (4-118)||(22163917-22164031)
[»] chr2 (2 HSPs)
chr2 (124-237)||(35296964-35297077)
chr2 (124-233)||(14688491-14688600)
[»] chr8 (3 HSPs)
chr8 (126-233)||(29259107-29259214)
chr8 (124-233)||(13821265-13821374)
chr8 (4-58)||(28574306-28574360)
[»] scaffold0015 (1 HSPs)
scaffold0015 (124-233)||(13900-14009)
[»] chr6 (5 HSPs)
chr6 (124-233)||(16498397-16498506)
chr6 (4-111)||(35164294-35164401)
chr6 (179-237)||(28493627-28493685)
chr6 (179-237)||(29806036-29806094)
chr6 (124-233)||(31932179-31932288)
[»] chr7 (1 HSPs)
chr7 (4-118)||(33631415-33631529)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 25109828 - 25109594
Alignment:
Q  3 atgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaa 102  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||  |||| ||||||||||||||||| |||||||||||||||||||||||    
T  25109828 atgcaaaatagactgtcagttgctagtattgatgctcatattcatccatctcgcagaacctgtccacacagcatcagcaaattcagaagtaaaaaataaa 25109729  T
Q  103 tgagaatgactttcatagaactatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctgcacagattcccttcttgctgtcaacc 202  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| | ||||||| ||||||||||||||||||||||||||    
T  25109728 tgagaatgactttcatagcactatcaaggtttaaagttggcgattagcttcaattgtgtggaaattgcttgctacacagattcccttcttgctgtcaacc 25109629  T
Q  203 ttatcaaagaagatttaaatcagtttcatgtctata 238  Q
    |||||||||||||||| |||||||||||||||||||    
T  25109628 ttatcaaagaagattt-aatcagtttcatgtctata 25109594  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 3938201 - 3938315
Alignment:
Q  4 tgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaat 103  Q
    ||||||||||| || || |||||||||||||   ||||||| ||||||||||||  | || |||| ||||||||| || | ||| ||| |||||| |  |    
T  3938201 tgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcagcataatcacaagaaaaaaagaggt 3938300  T
Q  104 gagaatgactttcat 118  Q
    |||||||| ||||||    
T  3938301 gagaatgagtttcat 3938315  T

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Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 39045195 - 39045309
Alignment:
Q  4 tgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaat 103  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  39045195 tgcaaaatagactctcagctgctagtattgatgctcatattcatccatctcatagaacctgtccacacagcatcaacaaattcacaagtaaaaaataaat 39045294  T
Q  104 gagaatgactttcat 118  Q
    |||||||||||||||    
T  39045295 gagaatgactttcat 39045309  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 7280208 - 7280100
Alignment:
Q  10 atagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaatgagaat 109  Q
    ||||| || ||||||||||||||||  |||||||||||||||||||||| | || |||||||| ||||| || ||||| ||| |||||| |  |||||||    
T  7280208 atagattgccagttgctagtattgacactcatatttatccatctcatagcacctttccacacaacatcagcatattcacaagaaaaaaacaggtgagaat 7280109  T
Q  110 gactttcat 118  Q
    || ||||||    
T  7280108 gagtttcat 7280100  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 41701214 - 41701265
Alignment:
Q  7 aaaatagactgtcagttgctagtattgatgctcatatttatccatctcatag 58  Q
    |||||||| |||||||||||||||||||||||||  || |||||||||||||    
T  41701214 aaaatagattgtcagttgctagtattgatgctcaagttcatccatctcatag 41701265  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 45516699 - 45516590
Alignment:
Q  124 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctgcacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 223  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||| ||||   |||||||||||||||| |||||| | |||||||| ||||||||||    
T  45516699 tatcaagggttaaggttggcgatcagcttcaattgtgaggaattggcgtgctattcagattcccttcttgcagtcaacttcatcaaagatgatttaaatc 45516600  T
Q  224 agtttcatgt 233  Q
    | ||||||||    
T  45516599 attttcatgt 45516590  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 44093782 - 44093891
Alignment:
Q  124 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctgcacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 223  Q
    |||||||| |||| ||||||| | ||||| |||||| |||||||||| ||||   |||| || |||||||| |||||||| |||||||| ||||||||||    
T  44093782 tatcaagggttaaggttggcggtcagcttaaattgttaggaattggcgtgctattcagactcacttcttgcagtcaacctcatcaaagatgatttaaatc 44093881  T
Q  224 agtttcatgt 233  Q
    | ||||||||    
T  44093882 attttcatgt 44093891  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 49147986 - 49147877
Alignment:
Q  124 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctgcacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 223  Q
    |||||||| |||| ||||||||| ||||| |||||||||| |||||| ||||   |||| ||||||||||| |||||||| |||||||| ||||||||||    
T  49147986 tatcaagggttaaggttggcgatcagcttaaattgtgaggtattggcgtgctattcagactcccttcttgcagtcaacctcatcaaagatgatttaaatc 49147887  T
Q  224 agtttcatgt 233  Q
    | || |||||    
T  49147886 atttccatgt 49147877  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 3423246 - 3423360
Alignment:
Q  4 tgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaat 103  Q
    ||||||||||| || || |||||||||||||   ||||||| ||||||||||||  | || |||| |||||||||||| | ||| ||| |||||| |  |    
T  3423246 tgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcaacataatcacaagaaaaaaagaggt 3423345  T
Q  104 gagaatgactttcat 118  Q
    |||||||| ||||||    
T  3423346 gagaatgagtttcat 3423360  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 22164031 - 22163917
Alignment:
Q  4 tgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaat 103  Q
    ||||||||||| || || |||||||||||||   ||||||| ||||||||||||  | || |||| ||||||||| || | ||| ||| |||||| |  |    
T  22164031 tgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcagcataatcacaagaaaaaaagaggt 22163932  T
Q  104 gagaatgactttcat 118  Q
    |||||||| ||||||    
T  22163931 gagaatgagtttcat 22163917  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 35296964 - 35297077
Alignment:
Q  124 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctgcacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 223  Q
    |||||||| |||| ||||||| | | ||| ||||||||||||||||| ||||   |||| ||||||||||| |||||||| ||||| || ||||||||||    
T  35296964 tatcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcagtcaacctgatcaatgatgatttaaatc 35297063  T
Q  224 agtttcatgtctat 237  Q
    | ||||||||||||    
T  35297064 attttcatgtctat 35297077  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 14688491 - 14688600
Alignment:
Q  124 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctgcacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 223  Q
    |||||| | |||| ||||||| | | ||| ||||||||||||||||| ||||   |||| |||||||||||  ||||||| |||||||| ||||||||||    
T  14688491 tatcaaaggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcaatcaacctcatcaaagatgatttaaatc 14688590  T
Q  224 agtttcatgt 233  Q
    | ||||||||    
T  14688591 attttcatgt 14688600  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 29259107 - 29259214
Alignment:
Q  126 tcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctgcacagattcccttcttgctgtcaaccttatcaaagaagatttaaatcag 225  Q
    |||||| |||| ||||||| | | ||| ||||||||||||||||| ||||   |||| ||||||||||| |||||||| |||||||| |||||||||||     
T  29259107 tcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcagtcaacctcatcaaagatgatttaaatcat 29259206  T
Q  226 tttcatgt 233  Q
    ||||||||    
T  29259207 tttcatgt 29259214  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 13821265 - 13821374
Alignment:
Q  124 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctgcacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 223  Q
    |||||| | |||| ||||||||| | ||| ||||||||||||||| | ||||   |||| ||||||||||| |||||||| |||||||| ||||||||||    
T  13821265 tatcaatggttaaggttggcgatcaacttaaattgtgaggaattgacgtgctattcagactcccttcttgcagtcaacctcatcaaagatgatttaaatc 13821364  T
Q  224 agtttcatgt 233  Q
    | ||||||||    
T  13821365 attttcatgt 13821374  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 28574306 - 28574360
Alignment:
Q  4 tgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatag 58  Q
    ||||||||||| || || |||||||||||||  |||||||| |||||||||||||    
T  28574306 tgcaaaatagattgccaattgctagtattgacactcatattcatccatctcatag 28574360  T

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Target: scaffold0015 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 13900 - 14009
Alignment:
Q  124 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctgcacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 223  Q
    |||||||| |||| ||||||| | | ||| ||||||||||||||||| ||||   |||| ||||||||||| |||||||| |||||||| |||||||||     
T  13900 tatcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcagtcaacctcatcaaagatgatttaaatt 13999  T
Q  224 agtttcatgt 233  Q
    | ||||||||    
T  14000 attttcatgt 14009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 16498506 - 16498397
Alignment:
Q  124 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctgcacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 223  Q
    |||||||| |||| ||||||| ||| ||| ||||||||||||||||| ||||   |||| |||||||||||  | ||||| |||||||| ||||||||||    
T  16498506 tatcaagggttaaggttggcggttaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcaatgaacctcatcaaagatgatttaaatc 16498407  T
Q  224 agtttcatgt 233  Q
    | ||||||||    
T  16498406 attttcatgt 16498397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 35164294 - 35164401
Alignment:
Q  4 tgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaat 103  Q
    |||| ||||||||| || |||||| |||||| ||| ||||| |||||  | |||| | ||||||||||| |||||||| ||||| |||||||||||| ||    
T  35164294 tgcagaatagactgccaattgctaatattgacgcttatattcatccaatttatagcacctgtccacacaacatcaacatattcacaagtaaaaaatagat 35164393  T
Q  104 gagaatga 111  Q
    ||||||||    
T  35164394 gagaatga 35164401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 28493627 - 28493685
Alignment:
Q  179 cagattcccttcttgctgtcaaccttatcaaagaagatttaaatcagtttcatgtctat 237  Q
    ||||||| ||||||| ||||||||| |||||||| ||||||||||| ||||||||||||    
T  28493627 cagattctcttcttgttgtcaacctcatcaaagatgatttaaatcattttcatgtctat 28493685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 29806036 - 29806094
Alignment:
Q  179 cagattcccttcttgctgtcaaccttatcaaagaagatttaaatcagtttcatgtctat 237  Q
    ||||||| ||||||| ||||||||| |||||||| ||||||||||| ||||||||||||    
T  29806036 cagattctcttcttgttgtcaacctcatcaaagatgatttaaatcattttcatgtctat 29806094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 31932288 - 31932179
Alignment:
Q  124 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctgcacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 223  Q
    |||||| || ||||| |||| ||||| ||||||| ||| ||||||| |||||   | |||||||||||  ||||||| || ||||| || ||||| ||||    
T  31932288 tatcaaagtctaaagctggctattagtttcaattttgacgaattggtttgctattcggattcccttctcactgtcaaactcatcaaggaggatttgaatc 31932189  T
Q  224 agtttcatgt 233  Q
    | ||||||||    
T  31932188 actttcatgt 31932179  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 33631415 - 33631529
Alignment:
Q  4 tgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaat 103  Q
    ||||||||||| || || |||||||||||||   ||||||| ||||||||||||  | || |||| ||||||||| || | ||| ||| |||||| |  |    
T  33631415 tgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcagcataatcacaagaaaaaaagaggt 33631514  T
Q  104 gagaatgactttcat 118  Q
    |||||||| ||||||    
T  33631515 gagaatgagtttcat 33631529  T

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