View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_36 (Length: 427)
Name: NF10145A_low_36
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 154 - 421
Target Start/End: Original strand, 9867821 - 9868088
Alignment:
| Q |
154 |
acattcgcaaaagactagtcgattgtggtttgcctttagtagcgatcttagtggtaattggatcacactggctagaaaagttttagtcacgtggaattta |
253 |
Q |
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| T |
9867821 |
acattcgcaaaagactagtcgactgtggtttgcctttagtagcgatcgtagtggtaattggatcacaccatctagaaaagttttattaacgtggaattta |
9867920 |
T |
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| Q |
254 |
gtcatgcatggctaaacaaatatgactcaatcatcatattcacgatgcatgacgaaatcatgatcaaagagagactggcgtcgcttctttatatttcacc |
353 |
Q |
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| T |
9867921 |
gtcatgcatggctaaacaaatatgattcaatcatcatattcacgatgcatggcgaaatcatgatcaaagagagactggcgtcgcttccttatatttcacc |
9868020 |
T |
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| Q |
354 |
aatgttccaaagcaatttttgtatgttgaattaaggatagggtttgatgtgtgtggtatattcttcga |
421 |
Q |
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| T |
9868021 |
aatgttccaaagcaatttttgtatgttgaattaaggaaagggtttgatgtgtgtggtatattgttcga |
9868088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 9867665 - 9867765
Alignment:
| Q |
57 |
atatgggtcatgggaggatgatcgacgacatgccaagtttcagagtttctcgcggcaagggggagaatcaacagtaatcaaagggttgaagacttcaaca |
156 |
Q |
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| T |
9867665 |
atatgggtcatgggaggatgatcgaggacatgccaagtttcagagtttctcgcggcaagggggagaatcaatagtcatcaaagggttgaagacttcaaca |
9867764 |
T |
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| Q |
157 |
t |
157 |
Q |
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| T |
9867765 |
t |
9867765 |
T |
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