View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_364 (Length: 251)

Name: NF10145A_low_364
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_364
NF10145A_low_364
[»] chr1 (1 HSPs)
chr1 (1-237)||(34092365-34092601)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 34092601 - 34092365
Alignment:
Q  1 attataattaatttaaaaaatcttttattgtaggcttgttaaagannnnnnnaaaaccaatattgatgttttaattaaatttgaaagatattttnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||          
T  34092601 attataattaatttaaaaaatcttttattgtaggcttgttaaagatttttttaaaaccaattttgatgttttaattaaatttgaaagatattttaaaaaa 34092502  T
Q  101 ncgatgttatgttaaagatgaaataaatattttgattaaccttgtattaaataatttttggtagaaaaaatagaaaacttagtctgtatatgatgtgatt 200  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34092501 acgatgttatgttaaagattaaataaatattttgattaaccttgtattaaataatttttggtagaaaaaatagaaaacttagtctgtatatgatgtgatt 34092402  T
Q  201 tgttttcaaaggagattgtatatgatgtgatgtccat 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  34092401 tgttttcaaaggagattgtatatgatgtgatgtccat 34092365  T

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