View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_366 (Length: 251)
Name: NF10145A_low_366
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_366 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 67 - 231
Target Start/End: Original strand, 21226857 - 21227021
Alignment:
| Q |
67 |
atgcgctctacttgagttatcattaatgtacatgttttgtttgtaaattaaatatgccaaaggaaggaagtcgagtgaacattaatgagttagtttataa |
166 |
Q |
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| T |
21226857 |
atgcgctctactcgatttatcattaatgtacatattttgtttataaattaaatatgccaaaggaaggaagtcgagtgaacattaatgagttagtttataa |
21226956 |
T |
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| Q |
167 |
cattttggtttcataatttttgacaagaattaatatcaaagttcaggtctcaacttatagttgat |
231 |
Q |
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| T |
21226957 |
cattttggtttcataatttttgacaagaattagtatcaaagttcaggtctcaactcatagttgat |
21227021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 10034506 - 10034599
Alignment:
| Q |
71 |
gctctacttgagttatcattaatgtacatgttttgtttgtaaattaaata-tgccaaa-ggaaggaagtcgagtgaacattaatgagttagttt |
162 |
Q |
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| T |
10034506 |
gctctactcgatttatcattaatgttcatgttttgctcctaaattaagtaatgccaaaaggaaggaagccgattgaacattaatgatttagttt |
10034599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15939545 - 15939610
Alignment:
| Q |
1 |
cttgatataactcacatttccatctatgagaatgagaccataattcatttcttactttccataaca |
66 |
Q |
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| T |
15939545 |
cttgatctaactcacatttccatctatgagaatgagactattattcatttcttactttccataaca |
15939610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 32704920 - 32704856
Alignment:
| Q |
2 |
ttgatataactcacatttccatctatgagaatgagaccataattcatttcttactttccataaca |
66 |
Q |
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| T |
32704920 |
ttgatgtatctcacatttccatctatgagaatgagactattattcattttttattttccataaca |
32704856 |
T |
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