View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_372 (Length: 250)
Name: NF10145A_low_372
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_372 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 3067317 - 3067554
Alignment:
| Q |
13 |
aaaattagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccaga |
112 |
Q |
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| T |
3067317 |
aaaattagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccaga |
3067416 |
T |
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| Q |
113 |
atataaacaaataataatacatgcagtcttccatacaagctagaatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaata |
212 |
Q |
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| T |
3067417 |
atataaacaaataataatacatgcagtcttccatacaagctataatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaata |
3067516 |
T |
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| Q |
213 |
agtgccattcaaaatcttagagtagtacagatcctttg |
250 |
Q |
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| T |
3067517 |
agtgccattcaaaatcttagagtagtacagatcctttg |
3067554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 3052615 - 3052679
Alignment:
| Q |
13 |
aaaattagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaa |
79 |
Q |
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| T |
3052615 |
aaaattagagaataaataactattc--tatttatatagtcaagttgttgatatcatatgaaattgaa |
3052679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 6769879 - 6769824
Alignment:
| Q |
17 |
ttagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaa |
74 |
Q |
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| T |
6769879 |
ttagagaataaataactattaatta--tatagagtgaagttgttgataacatatgaaa |
6769824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 31458811 - 31458845
Alignment:
| Q |
13 |
aaaattagagaataaataactattaattatttata |
47 |
Q |
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| T |
31458811 |
aaaattagagaataaataactactaattatttata |
31458845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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