View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_375 (Length: 250)
Name: NF10145A_low_375
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_375 |
 | |
|
| [»] scaffold0145 (1 HSPs) |
| | |
|
| [»] scaffold1001 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0145 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0145
Description:
Target: scaffold0145; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 12784 - 12552
Alignment:
| Q |
8 |
tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12784 |
tgagatgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagcggatg |
12685 |
T |
|
| Q |
108 |
ataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12684 |
ataaagagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagt |
12585 |
T |
|
| Q |
208 |
ttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
12584 |
ttatattataataatgatgagaatgatgatgtc |
12552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 16284933 - 16285165
Alignment:
| Q |
8 |
tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
16284933 |
tgagatgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagtggatg |
16285032 |
T |
|
| Q |
108 |
ataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16285033 |
ataaagagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagt |
16285132 |
T |
|
| Q |
208 |
ttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
16285133 |
ttatattataataatgatgagaatgatgatgtc |
16285165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 83 - 240
Target Start/End: Original strand, 18231449 - 18231604
Alignment:
| Q |
83 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
182 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
18231449 |
gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattaatattatatatatgtaaagaa |
18231546 |
T |
|
| Q |
183 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
||||||||||| | ||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
18231547 |
attactacgatagaaaatgatgatgttatattataataatgatgagaatgacgatgtc |
18231604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 11556070 - 11555916
Alignment:
| Q |
83 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
182 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||||||||| || ||| ||| || | ||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
11556070 |
gataaggtggtgatataaatggttgatagagagtaatgatgatgaatcc-ata-ctgtcacaaagagtgatgacgattaatattatatatatgtaaagaa |
11555973 |
T |
|
| Q |
183 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt |
239 |
Q |
| |
|
||||||||||| ||||||| ||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
11555972 |
attactacgataggaaatgttgatgttatattataataatgatgagaatgacgatgt |
11555916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 11098355 - 11098468
Alignment:
| Q |
113 |
gagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgta |
212 |
Q |
| |
|
||||||||||| |||||||||||| | ||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |||| || || |
|
|
| T |
11098355 |
gagtaatgatgaggagtcctataattgtaatggagagtgatgacgattaatattatatatatgtaaagaaattactattgtgggaaataatgatgttata |
11098454 |
T |
|
| Q |
213 |
ttataataatgatg |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11098455 |
ttataataatgatg |
11098468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 11098292 - 11098356
Alignment:
| Q |
8 |
tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtgga |
72 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||| | || || ||||||||| ||||||||||| |
|
|
| T |
11098292 |
tgagatgaataataaagtaaaataaagggatgttgacgtataaggagtcacgcataaggtgtgga |
11098356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 10641217 - 10641449
Alignment:
| Q |
8 |
tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg |
107 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| || ||||||||||||| ||| ||| ||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
10641217 |
tgagatgaataataaaataaagtaaatggatgttggcgtagaatgagtcacacgtgaggcgtggattaatgaagagataaggtggtgatataagcggatg |
10641316 |
T |
|
| Q |
108 |
ataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagt |
207 |
Q |
| |
|
||| |||||||||| | |||||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10641317 |
atagagagtaatgacgaggagtcctataactgtgacagagagcgatgacgattaatattatatatatgtaaagaaattactacgatgggaaattatgagg |
10641416 |
T |
|
| Q |
208 |
ttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
10641417 |
ttatattataataatgatgagaatgatgatgtc |
10641449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 14970295 - 14970060
Alignment:
| Q |
7 |
ctgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
106 |
Q |
| |
|
|||||| ||||| |||||||||||||| | ||||| ||||||||||||| ||||| ||||||| ||| || ||||| |||||||||||| |||| |
|
|
| T |
14970295 |
ctgagaagaataataaaataaaataaaggaatgttgatgtagaatgagtcactcgtaaagtgtggattaatgaagagataaagtggtgatataaatggat |
14970196 |
T |
|
| Q |
107 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatat--atatgtaaagaaattactacgatgggaaatgatg |
204 |
Q |
| |
|
|||| |||||||||||| ||||||||| |||| | ||| ||| | |||||| ||||||||||| |||| || ||||||||| ||||||||||||||| |
|
|
| T |
14970195 |
gatagagagtaatgatgaggagtcctacaactgtgacaaagaatgatgacggttaatattatatatatatttatagaaattaccgcgatgggaaatgatg |
14970096 |
T |
|
| Q |
205 |
agtttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
| || ||||||||||| |||||||||| |||||| |
|
|
| T |
14970095 |
atgttatattataataacaatgagaatgacgatgtc |
14970060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 10906699 - 10906854
Alignment:
| Q |
85 |
taaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat |
184 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||| | ||| |||||||||| ||||||||| | | | ||||||||| ||||||| || | || |
|
|
| T |
10906699 |
taaggtggtgatataaacggttgacaaagagtaatgacgaggaatcctataactgcgacagagagtgaagggggttaatattatgtatatgtcaacatat |
10906798 |
T |
|
| Q |
185 |
tactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
| || |||| |||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
10906799 |
aaataggatgtgaaatgatgatgttatattataataatgatgagaatgacgatgtc |
10906854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 9191181 - 9191065
Alignment:
| Q |
83 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
182 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| ||| |||||||||| | | | ||||| |||| || | |||| |||||||||| || || |
|
|
| T |
9191181 |
gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcctataactgtgataaagagtgatgatgattgatataatatatatgtgaataa |
9191082 |
T |
|
| Q |
183 |
attactacgatgggaaa |
199 |
Q |
| |
|
|| | ||||||| |||| |
|
|
| T |
9191081 |
ataaatacgatgagaaa |
9191065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 83 - 239
Target Start/End: Original strand, 22614701 - 22614857
Alignment:
| Q |
83 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
182 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
22614701 |
gataaggtggtgatataagcggatgatagagagtattgatgaggagtcctataactatgacagagagtgatgacgattaatattatatatatgtaaagaa |
22614800 |
T |
|
| Q |
183 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt |
239 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| |
|
|
| T |
22614801 |
attactacgatgggaaatgatgaggttatattataataatgaagagaatgacgatgt |
22614857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 83 - 240
Target Start/End: Complemental strand, 11655631 - 11655474
Alignment:
| Q |
83 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| ||||||||||| || | ||||||||| | || || ||||||||||||||||||||||| |
|
|
| T |
11655631 |
gataaggtggtgatataagcggatgataaagaatattgatgaggagtcctatagctgtgacagagagtgacgatgattaatattatatatatgtaaagaa |
11655532 |
T |
|
| Q |
183 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||||||||| |||||||| |||||| |
|
|
| T |
11655531 |
attactacgatggaaaatgatgaggttatattataataatgaagagaatgacgatgtc |
11655474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 20026200 - 20025970
Alignment:
| Q |
10 |
agatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgat |
109 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||| | | ||||||||||||||||||||| || ||| || |||||||| ||||||||| | ||||| |
|
|
| T |
20026200 |
agatgaataataaaatagaataaagggatgttgacgtcaaatgagtcacgcgtaaggtgttgattaatgaagagataaggttgtgatataaacatatgat |
20026101 |
T |
|
| Q |
110 |
aaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagttt |
209 |
Q |
| |
|
| ||| |||||| | ||||||||| |||||| ||| ||||| ||||||| | |||||||||||||||||||||||||| | ||||| ||||||||| || |
|
|
| T |
20026100 |
agagaataatgaagaggagtcctacaactatgacaaagagtgatgacgattcatattatatatatgtaaagaaattaccatgatggcaaatgatgatgtt |
20026001 |
T |
|
| Q |
210 |
gtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
||||||||||| |||| |||||||||||| |
|
|
| T |
20026000 |
atattataataacaatgacaatgatgatgtc |
20025970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 13477489 - 13477596
Alignment:
| Q |
125 |
ggagtcctataactataacagagagtaatgacgagtaatattata------tatatgtaaagaaattactacgatgggaaatgatgagtttgtattataa |
218 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
13477489 |
ggagtcctataactgtaacaaagagtgatgacgattaatattatatatatatatatgtaaagaaattactacgatgggaaaggatgatgttatattataa |
13477588 |
T |
|
| Q |
219 |
taatgatg |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
13477589 |
taatgatg |
13477596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 4531649 - 4531820
Alignment:
| Q |
12 |
atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata |
110 |
Q |
| |
|
||||||| |||||||||||| | || |||| || || || ||||||||| |||||| |||| ||| || |||||||||||||||||| ||| ||||| |
|
|
| T |
4531649 |
atgaataataaaataaaatagaggggtgttggcgtataaatgagtcacgtgtaagggttggattaatgaagagataaggtggtgatataaacggttgata |
4531748 |
T |
|
| Q |
111 |
aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat |
184 |
Q |
| |
|
|||||||||||| ||| ||| |||| | | || ||||| ||||| | | |||||||||||||||||| |||| |
|
|
| T |
4531749 |
gagagtaatgatgaggaatcc-ataa-tgtgacgaagagtgatgacaattgatattatatatatgtaaataaat |
4531820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 24831923 - 24832161
Alignment:
| Q |
8 |
tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg |
107 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| || || ||| || |||| | ||||||| |||||||||| |
|
|
| T |
24831923 |
tgagatgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagttgactaatgaagagatacgatggtgatgtaagcggatg |
24832022 |
T |
|
| Q |
108 |
ataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattat------atatatgtaaagaaattactacgatgggaaatg |
201 |
Q |
| |
|
||| |||||||||||| |||||||||||| | | ||| ||||| |||| || ||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
24832023 |
atagagagtaatgatgaggagtcctataattgtgacaaagagtgatgatgattaatattatatatacatatatgtaaagaaattactacgatgagaaatg |
24832122 |
T |
|
| Q |
202 |
atgagtttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
||||| || || ||||||| |||||||||||| |||||| |
|
|
| T |
24832123 |
atgaggttatactataatattgatgagaatgacgatgtc |
24832161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 13935849 - 13935715
Alignment:
| Q |
89 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact |
188 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||| ||| ||||||||| | ||| ||||| ||||| | | ||| ||||| |||||||| ||| | | |
|
|
| T |
13935849 |
gtggtgatataaacggttgatagagagtaatgattaggaatcctataacggtgacaaagagtgatgacaattgatactatatctatgtaaatgaataaat |
13935750 |
T |
|
| Q |
189 |
acgatgggaaatgatgagtttgtattataataatga |
224 |
Q |
| |
|
||||| |||||| |||| || |||||||||||||| |
|
|
| T |
13935749 |
acgat-ggaaataatgatgttatattataataatga |
13935715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 14481523 - 14481761
Alignment:
| Q |
8 |
tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg |
107 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| ||||| ||| || |||| ||||||| |||||||||| |
|
|
| T |
14481523 |
tgagatgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagtggattaatgaagagatacaatggtgatgtaagcggatg |
14481622 |
T |
|
| Q |
108 |
ataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatat------tatatatatgtaaagaaattactacgatgggaaatg |
201 |
Q |
| |
|
||| |||||||||||| |||||||||||||| | ||| ||||| |||| || |||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14481623 |
atagagagtaatgatgaggagtcctataactgtgacaaagagtgatgatgattaatattatatatatatatatgtaaagaaattactacgatgggacatg |
14481722 |
T |
|
| Q |
202 |
atgagtttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
||||| || || ||||||| ||||||| |||| |||||| |
|
|
| T |
14481723 |
atgaggttatactataatattgatgaggatgacgatgtc |
14481761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 17791091 - 17790941
Alignment:
| Q |
24 |
ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg |
123 |
Q |
| |
|
||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| || ||||||||| || ||||||||||||| | |||||||||||| |
|
|
| T |
17791091 |
ataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatg |
17790992 |
T |
|
| Q |
124 |
gggagtcctataactataacagagagtaatgacgagtaatattatatatat |
174 |
Q |
| |
|
|||||||||||||| | ||||||||| |||| || ||||||||||||||| |
|
|
| T |
17790991 |
aggagtcctataactttgacagagagtgatgatgattaatattatatatat |
17790941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 19099531 - 19099381
Alignment:
| Q |
24 |
ataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatg |
123 |
Q |
| |
|
||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| || ||||||||| || ||||||||||||| | |||||||||||| |
|
|
| T |
19099531 |
ataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatg |
19099432 |
T |
|
| Q |
124 |
gggagtcctataactataacagagagtaatgacgagtaatattatatatat |
174 |
Q |
| |
|
|||||||||||||| | ||||||||| |||| || ||||||||||||||| |
|
|
| T |
19099431 |
aggagtcctataactttgacagagagtgatgatgattaatattatatatat |
19099381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 22159931 - 22159871
Alignment:
| Q |
90 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
150 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| |||||||||||| ||| ||||| |
|
|
| T |
22159931 |
tggtgatataaacggttgatagagagtaatgatgaggaatcctataactatgacaaagagt |
22159871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 21975335 - 21975275
Alignment:
| Q |
90 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
150 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| ||||| |
|
|
| T |
21975335 |
tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt |
21975275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 21997766 - 21997706
Alignment:
| Q |
90 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
150 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| ||||| |
|
|
| T |
21997766 |
tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt |
21997706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 44586360 - 44586574
Alignment:
| Q |
12 |
atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata |
110 |
Q |
| |
|
||||||| | |||||||||| | ||||||| ||||||| ||||||| |||||||| |||| ||| | |||||||||||||||||| ||| ||||| |
|
|
| T |
44586360 |
atgaataatgaaataaaatagagggatgttgacatagaaatgagtcatgcgtaagggttggattaataaagagataaggtggtgatataaacggttgata |
44586459 |
T |
|
| Q |
111 |
aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttg |
210 |
Q |
| |
|
|||||||||||| ||| ||| ||| || ||||| ||||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
44586460 |
gagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattagtattatatatatgtaaagaaattactacgatatgaaatgatgatgtta |
44586557 |
T |
|
| Q |
211 |
tattataataatgatga |
227 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
44586558 |
aattataataataatga |
44586574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 24786376 - 24786268
Alignment:
| Q |
8 |
tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg |
107 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| | |||||| |||||| |||||||| | || ||| || | || |||||| ||||||| || ||| |
|
|
| T |
24786376 |
tgagatgaataataaaataaaataaagggatgttgacgtagaataagtcacacgtaaggtatagattaatgaaaagagaaggtgaagatataaacgaatg |
24786277 |
T |
|
| Q |
108 |
ataaagagt |
116 |
Q |
| |
|
||| ||||| |
|
|
| T |
24786276 |
atagagagt |
24786268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 16862432 - 16862347
Alignment:
| Q |
89 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat |
174 |
Q |
| |
|
||||| |||||| ||| ||||||||| |||||||| ||| ||||||||||| |||| || || || || ||||||||||||||| |
|
|
| T |
16862432 |
gtggtaatataaacggttgataaagactaatgatgaggaatcctataactacaacaaagggtgtcgatgattaatattatatatat |
16862347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1001 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1001
Description:
Target: scaffold1001; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 240
Target Start/End: Complemental strand, 1545 - 1389
Alignment:
| Q |
83 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
182 |
Q |
| |
|
||||| ||| ||| ||| |||||||||| |||||| | ||| ||||||||||||| | | ||||||| ||||| | ||||||| ||||| || ||| || |
|
|
| T |
1545 |
gataatgtgatgacatatgcggatgatatagagtatttatgaggagtcctataaccgtgaaagagagtgatgactattaatatt-tatatgtggaaataa |
1447 |
T |
|
| Q |
183 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
240 |
Q |
| |
|
||||| || |||| |||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
1446 |
attacaacaatggaaaatgatgaggttatattataataatgatgagaatgacgatgtc |
1389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 1567041 - 1567154
Alignment:
| Q |
89 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact |
188 |
Q |
| |
|
|||||||||||| ||| |||| || ||||| ||| ||| || ||||| | | ||| ||||| ||||||| | |||||||||||||||||| |||| | | |
|
|
| T |
1567041 |
gtggtgatataaacggtggatagagggtaataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaat |
1567140 |
T |
|
| Q |
189 |
acgatgggaaatga |
202 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
1567141 |
acgatgagaaatga |
1567154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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