View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_376 (Length: 250)

Name: NF10145A_low_376
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_376
NF10145A_low_376
[»] scaffold0003 (1 HSPs)
scaffold0003 (16-245)||(8966-9192)
[»] chr7 (1 HSPs)
chr7 (16-245)||(16420254-16420480)
[»] chr8 (1 HSPs)
chr8 (16-245)||(5538285-5538515)
[»] chr3 (1 HSPs)
chr3 (55-208)||(19932297-19932449)
[»] chr1 (5 HSPs)
chr1 (55-208)||(18901509-18901668)
chr1 (55-109)||(51784718-51784772)
chr1 (196-238)||(18901445-18901487)
chr1 (170-208)||(51784794-51784832)
chr1 (205-238)||(51784859-51784892)
[»] chr5 (2 HSPs)
chr5 (16-194)||(37940333-37940512)
chr5 (196-238)||(37940550-37940592)


Alignment Details
Target: scaffold0003 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 9192 - 8966
Alignment:
Q  16 gaaaaagaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatg 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||     
T  9192 gaaaaagaataggaaccggttactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgt-ggatc 9094  T
Q  116 tttatttccacaggtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaattctagct 215  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||||||    
T  9093 tttatttccacacgccaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatcttat--tatattactctaataaatactagct 8996  T
Q  216 agtaatatctagtggcacatattcttcgac 245  Q
    ||||||||||||||||||||||| ||||||    
T  8995 agtaatatctagtggcacatatttttcgac 8966  T

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Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 16420480 - 16420254
Alignment:
Q  16 gaaaaagaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatg 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||     
T  16420480 gaaaaagaataggaaccggttactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgt-ggatc 16420382  T
Q  116 tttatttccacaggtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaattctagct 215  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||||||    
T  16420381 tttatttccacacgccaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatcttat--tatattactctaataaatactagct 16420284  T
Q  216 agtaatatctagtggcacatattcttcgac 245  Q
    ||||||||||||||||||||||| ||||||    
T  16420283 agtaatatctagtggcacatatttttcgac 16420254  T

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Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 5538285 - 5538515
Alignment:
Q  16 gaaaaagaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatg 115  Q
    ||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5538285 gaaaaggaataggaactggttactaataattctcccactagcttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgt-ggatg 5538383  T
Q  116 tttatttccacaggtcaatcacttcc-tttgctctatgcttccttttgttttcctactttcttgctaatctgat--tatatattactctaataaattcta 212  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||| |||    
T  5538384 tttatttccacacg-caatcacttccttttgctctatgcttccttttgttttcctactttcttgctaatcttattatatatattactctaataaatacta 5538482  T
Q  213 gctagtaatatctagtggcacatattcttcgac 245  Q
    |||||||||||||| ||||||||||| ||||||    
T  5538483 gctagtaatatctaatggcacatatttttcgac 5538515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 55 - 208
Target Start/End: Complemental strand, 19932449 - 19932297
Alignment:
Q  55 aacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatgtttatttccacaggtcaatcacttcctttgctctatgct 154  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||| ||||||| |||||||||    
T  19932449 aacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtgg-atgtttatttccactagtcaatcagttccttttctctatgct 19932351  T
Q  155 tccttttgttttcctactttcttgctaatctgattatatattactctaataaat 208  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||| ||||||||    
T  19932350 tccttttgctttcctactttattgctaatcttattatatattactttaataaat 19932297  T

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Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 55 - 208
Target Start/End: Complemental strand, 18901668 - 18901509
Alignment:
Q  55 aacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggg------atgtttatttccacaggtcaatcacttcctttgctc 148  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||  |||||||| ||||||| |||    
T  18901668 aacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttaatgtttatttccaccagtcaatcagttccttttctc 18901569  T
Q  149 tatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaat 208  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||    
T  18901568 tatgcttccttttgctttcctactttcttgctaatcttattatatattactttaataaat 18901509  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 51784718 - 51784772
Alignment:
Q  55 aacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgt 109  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  51784718 aacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgt 51784772  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 18901487 - 18901445
Alignment:
Q  196 tactctaataaattctagctagtaatatctagtggcacatatt 238  Q
    ||||||||||||| |||||||||||||||||||| ||||||||    
T  18901487 tactctaataaatactagctagtaatatctagtgtcacatatt 18901445  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 51784794 - 51784832
Alignment:
Q  170 actttcttgctaatctgattatatattactctaataaat 208  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  51784794 actttcttgctaatcttattatatattactttaataaat 51784832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 51784859 - 51784892
Alignment:
Q  205 aaattctagctagtaatatctagtggcacatatt 238  Q
    |||| |||||||||||||||||||||||||||||    
T  51784859 aaatactagctagtaatatctagtggcacatatt 51784892  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 37940333 - 37940512
Alignment:
Q  16 gaaaaagaataggaaccggttacta--ataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggga 113  Q
    |||||||||||||||||||||| ||  ||||   |  ||| |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| |||    
T  37940333 gaaaaagaataggaaccggttattataataacattgtcactaacttatttcctaaaaatatggaacatagtggaaaatgagattgggaagaaacgt-gga 37940431  T
Q  114 tgtttatttccacaggtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatata 194  Q
    |||||||||||||  || ||||| |||||||   ||||||||| ||||| || ||||||||||||||||||| ||||||||    
T  37940432 tgtttatttccactagttaatcagttcctttttcctatgcttctttttgcttacctactttcttgctaatcttattatata 37940512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 37940550 - 37940592
Alignment:
Q  196 tactctaataaattctagctagtaatatctagtggcacatatt 238  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  37940550 tactctaataaatactagctagtaatatctagtggcacatatt 37940592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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