View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_38 (Length: 426)

Name: NF10145A_low_38
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_38
NF10145A_low_38
[»] chr2 (15 HSPs)
chr2 (5-256)||(36444869-36445119)
chr2 (279-404)||(34392127-34392251)
chr2 (272-386)||(10163501-10163615)
chr2 (303-402)||(7381695-7381794)
chr2 (279-391)||(23863849-23863958)
chr2 (309-404)||(21603960-21604055)
chr2 (288-400)||(14565908-14566019)
chr2 (301-404)||(37357988-37358091)
chr2 (272-336)||(3668048-3668112)
chr2 (277-362)||(41095830-41095914)
chr2 (279-404)||(4775635-4775760)
chr2 (297-355)||(4779635-4779692)
chr2 (343-412)||(37811084-37811153)
chr2 (338-408)||(3668320-3668390)
chr2 (287-354)||(25275676-25275741)
[»] chr5 (18 HSPs)
chr5 (272-410)||(38010652-38010790)
chr5 (272-410)||(13478083-13478221)
chr5 (272-410)||(29989957-29990095)
chr5 (272-410)||(13086748-13086886)
chr5 (272-404)||(13015382-13015514)
chr5 (274-410)||(13421050-13421186)
chr5 (278-361)||(37881185-37881268)
chr5 (287-405)||(33858592-33858709)
chr5 (279-404)||(1826260-1826384)
chr5 (287-404)||(11607588-11607704)
chr5 (303-404)||(19357330-19357431)
chr5 (299-404)||(9827789-9827894)
chr5 (287-404)||(39570097-39570213)
chr5 (272-385)||(10292893-10293004)
chr5 (279-389)||(33271630-33271739)
chr5 (287-350)||(42148201-42148263)
chr5 (343-410)||(35622811-35622878)
chr5 (359-410)||(35622939-35622990)
[»] chr3 (24 HSPs)
chr3 (272-410)||(47186170-47186308)
chr3 (272-411)||(31187108-31187247)
chr3 (272-411)||(42664667-42664806)
chr3 (272-409)||(34029329-34029466)
chr3 (292-405)||(50934500-50934613)
chr3 (287-404)||(44380255-44380371)
chr3 (283-404)||(47426351-47426471)
chr3 (279-406)||(33509679-33509805)
chr3 (352-413)||(21963073-21963134)
chr3 (279-392)||(37742738-37742850)
chr3 (280-353)||(6022998-6023071)
chr3 (297-397)||(35094554-35094655)
chr3 (337-403)||(32319468-32319534)
chr3 (309-403)||(39498744-39498838)
chr3 (339-404)||(10018671-10018736)
chr3 (343-410)||(53440541-53440608)
chr3 (339-404)||(10179868-10179933)
chr3 (287-362)||(17466316-17466390)
chr3 (343-410)||(42273329-42273396)
chr3 (357-404)||(43689404-43689451)
chr3 (359-410)||(46489652-46489703)
chr3 (343-410)||(46489764-46489831)
chr3 (339-404)||(10123211-10123276)
chr3 (359-411)||(34955067-34955119)
[»] chr4 (21 HSPs)
chr4 (272-410)||(52012773-52012911)
chr4 (272-404)||(9799401-9799533)
chr4 (272-411)||(47943152-47943292)
chr4 (279-405)||(33249420-33249545)
chr4 (279-404)||(12473705-12473829)
chr4 (279-404)||(12528114-12528238)
chr4 (279-396)||(21260803-21260919)
chr4 (312-382)||(46719953-46720023)
chr4 (279-404)||(22343338-22343462)
chr4 (287-404)||(35869625-35869741)
chr4 (288-404)||(51811915-51812030)
chr4 (311-404)||(52910126-52910219)
chr4 (308-404)||(49999662-49999758)
chr4 (328-404)||(55590483-55590559)
chr4 (319-405)||(34829168-34829254)
chr4 (272-320)||(46720200-46720249)
chr4 (343-412)||(54277631-54277700)
chr4 (359-410)||(28092740-28092791)
chr4 (343-410)||(28092852-28092919)
chr4 (346-401)||(49998486-49998541)
chr4 (281-339)||(33174581-33174636)
[»] chr1 (15 HSPs)
chr1 (272-410)||(8809678-8809816)
chr1 (272-404)||(35998253-35998385)
chr1 (279-404)||(29119370-29119494)
chr1 (279-404)||(32676137-32676261)
chr1 (279-404)||(2569038-2569161)
chr1 (344-409)||(18056134-18056199)
chr1 (272-398)||(35534413-35534535)
chr1 (312-404)||(25161310-25161402)
chr1 (308-404)||(6223052-6223148)
chr1 (287-392)||(8462141-8462245)
chr1 (365-404)||(16679829-16679868)
chr1 (352-404)||(46435571-46435623)
chr1 (313-368)||(3688917-3688972)
chr1 (323-401)||(7214500-7214578)
chr1 (359-404)||(5581281-5581326)
[»] chr6 (7 HSPs)
chr6 (272-410)||(34245562-34245700)
chr6 (272-404)||(11113557-11113684)
chr6 (279-405)||(1211890-1212015)
chr6 (297-404)||(5403940-5404046)
chr6 (284-400)||(32644888-32645002)
chr6 (340-404)||(11753168-11753232)
chr6 (343-410)||(31030087-31030154)
[»] chr8 (8 HSPs)
chr8 (272-410)||(1514798-1514936)
chr8 (287-398)||(18168392-18168503)
chr8 (287-398)||(18631949-18632060)
chr8 (279-404)||(41179609-41179733)
chr8 (279-404)||(24337876-24338000)
chr8 (279-397)||(4708353-4708470)
chr8 (287-404)||(11254082-11254197)
chr8 (272-405)||(32825874-32826006)
[»] scaffold0032 (1 HSPs)
scaffold0032 (291-404)||(34195-34306)
[»] chr7 (5 HSPs)
chr7 (287-404)||(35341537-35341653)
chr7 (284-404)||(48250155-48250274)
chr7 (279-404)||(48072390-48072512)
chr7 (312-401)||(31306951-31307041)
chr7 (287-341)||(32694624-32694677)
[»] scaffold0229 (1 HSPs)
scaffold0229 (279-405)||(13051-13177)
[»] scaffold0263 (2 HSPs)
scaffold0263 (303-404)||(23168-23263)
scaffold0263 (359-404)||(23094-23139)
[»] scaffold0519 (1 HSPs)
scaffold0519 (287-404)||(11196-11311)
[»] scaffold0464 (1 HSPs)
scaffold0464 (343-404)||(6425-6486)
[»] scaffold0163 (1 HSPs)
scaffold0163 (365-410)||(28119-28164)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 256
Target Start/End: Original strand, 36444869 - 36445119
Alignment:
Q  5 caatgagatggacatcagggctattagacaaaattcaagaactacaataaataaagataaaggtgtaaaacgaattataatagatgatactcttcatcat 104  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36444869 caatgagtgggagatcagggctattagacaaaattcaagaactacaataaataaagataaaggtgtaaaacgaattataatagatgatactcttcatcat 36444968  T
Q  105 ataaactagttccaatttgtccatataattaagtttggattgattcaagtgacatgcagactacctaccttgtttagagtcccgtaacgtgagtgnnnnn 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||         
T  36444969 ataaactagttccaatttgtccatataattaagtttggattgattcaagtgacatgcagactacctaccttgtttagagtcccgtaatgtgagtg-aaaa 36445067  T
Q  205 nntatagacgatgaattggtccactcgtgtctaaacaaggtccaatattgtg 256  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445068 aatatagacgatgaattggtccactcgtgtctaaacaaggtccaatattgtg 36445119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 279 - 404
Target Start/End: Original strand, 34392127 - 34392251
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||  |||||| |    
T  34392127 tgtgccatgtggcacaccctttaaaaaa-atatatcaaataaagcatttataaagtaagattggtaggtggcacactctaattggccaatggtatatacc 34392225  T
Q  379 attggtaccttaatggtacacaagtg 404  Q
    |||||||||| |||||||||||||||    
T  34392226 attggtacctcaatggtacacaagtg 34392251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 10163615 - 10163501
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||  |||||||||||| | |||||||||||| ||    
T  10163615 attaaggtatgccatgtagcacatactttaaaaaacatatatcaaataaattatttataaagtaatatcagtatgtggcacatttttattggtcaatgtt 10163516  T
Q  372 atataacattggtac 386  Q
    |||||||||||||||    
T  10163515 atataacattggtac 10163501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 303 - 402
Target Start/End: Complemental strand, 7381794 - 7381695
Alignment:
Q  303 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaag 402  Q
    |||| ||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||| ||||| |||||| |||||||||||||||||||||||||    
T  7381794 aaaaaatatatcaaataaagaatttataaagtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaag 7381695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 279 - 391
Target Start/End: Original strand, 23863849 - 23863958
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    ||||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||  |||||  ||||| |    
T  23863849 tgtgccatgtggcacaccctttaaaaat-atatatcaaataaagcatttataaagtaacattggtaggtggcacactctaattgaccaata--atatacc 23863945  T
Q  379 attggtaccttaa 391  Q
    |||||||||||||    
T  23863946 attggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 21604055 - 21603960
Alignment:
Q  309 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    |||||||||||||  ||||||||||||||||||||| |||  ||||| | ||||||||||  |||||| |||||||||||||||||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtg 21603960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 400
Target Start/End: Original strand, 14565908 - 14566019
Alignment:
Q  288 tggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtacc 387  Q
    |||||||  ||||||||||| |||||||||| ||||| ||||||| ||| |||||||||| |||||||||  ||| |||||  |||||||||||||||||    
T  14565908 tggcacatcctttaaaaaac-tatatcaaatgaagtacttataaaataatattggtatgtagcacactctacttgatcaatgatatataacattggtacc 14566006  T
Q  388 ttaatggtacaca 400  Q
    ||| |||||||||    
T  14566007 ttagtggtacaca 14566019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 404
Target Start/End: Original strand, 37357988 - 37358091
Alignment:
Q  301 aaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 400  Q
    |||||| | |||| |||||||| |||||||||||||||||| || ||| |||||||| ||| ||||||  |||||| |||||||||||||||| ||||||    
T  37357988 aaaaaaaaaatattaaataaagcatttataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacaca 37358087  T
Q  401 agtg 404  Q
    ||||    
T  37358088 agtg 37358091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 3668048 - 3668112
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaa 336  Q
    |||||| ||||||||||||||| ||||||||||||||||||| |||||||| | |||||||||||    
T  3668048 attaagatgtgccatgtggcactcactttaaaaaacatatataaaataaagcacttataaagtaa 3668112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 41095830 - 41095914
Alignment:
Q  277 ggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattg 362  Q
    |||||||||||||||| ||  ||||||||| || |||||||||||| ||||||||||||||||||||| ||||  |||||| ||||    
T  41095830 ggtgtgccatgtggcataccttttaaaaaa-atctatcaaataaagcatttataaagtaacattggtaggtggtgcactctaattg 41095914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 404
Target Start/End: Complemental strand, 4775760 - 4775635
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtattta-taaagtaacattggtatgtggcacactcttattggtcaatattatataa 377  Q
    ||||||||||||||||  |||||||||| |||||| |||||||  | ||| |||||||| |||||||  ||  ||| ||| ||||| ||||| ||||||     
T  4775760 tgtgccatgtggcacatcctttaaaaaa-atatattaaataaaacaattaataaagtaagattggtagatgagacattctaattggccaataatatatat 4775662  T
Q  378 cattggtaccttaatggtacacaagtg 404  Q
    |||||||| |||||||||||| |||||    
T  4775661 cattggtagcttaatggtacataagtg 4775635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 4779692 - 4779635
Alignment:
Q  297 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacact 355  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || | ||||||||    
T  4779692 ctttaaaaaa-atatatcaaataaagtatttataaagtaacattgttaggcggcacact 4779635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 412
Target Start/End: Complemental strand, 37811153 - 37811084
Alignment:
Q  343 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtccat 412  Q
    ||||||||||||| | ||||| |||| |||||||||||||||| |  ||||||||||||||| |||||||    
T  37811153 tatgtggcacactttcattggccaatgttatataacattggtatcccaatggtacacaagtggtgtccat 37811084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 408
Target Start/End: Original strand, 3668320 - 3668390
Alignment:
Q  338 attggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgt 408  Q
    |||| |||||| ||||||||||    ||||| |||||||||||||||||||||||| ||||||| ||||||    
T  3668320 attgatatgtgacacactcttaccaatcaatgttatataacattggtaccttaatgatacacaaatgatgt 3668390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 25275676 - 25275741
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacac 354  Q
    ||||||||  ||||||||||  |||||||||||||||||||| |||||||||||| || |||||||||    
T  25275676 gtggcacatcctttaaaaaag-tatatcaaataaagtattta-aaagtaacattgataggtggcacac 25275741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 272 - 410
Target Start/End: Original strand, 38010652 - 38010790
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  38010652 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgtt 38010751  T
Q  372 atataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  38010752 atataacattggtaccttaatggtacacaagtggtgtcc 38010790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 272 - 410
Target Start/End: Original strand, 13478083 - 13478221
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  13478083 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaatatttataaagtaacaatggtatgtggcacactcttattggtcaatgtt 13478182  T
Q  372 atataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  13478183 atataacattggttccttaatggtacacaagtggtgtcc 13478221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 272 - 410
Target Start/End: Complemental strand, 29990095 - 29989957
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29990095 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgtt 29989996  T
Q  372 atataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  29989995 atataacattgataccttaatggtacacaagtggtgtcc 29989957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 272 - 410
Target Start/End: Complemental strand, 13086886 - 13086748
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    ||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  13086886 attaaggtgtgacatgtggcacacactttaaaaaatacatatcaaataaaatatttataaaataacattggtatgtggcacactcttattggtcaatgtt 13086787  T
Q  372 atataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  13086786 atataacattggtaccttaatggtacacaagtggtgtcc 13086748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 272 - 404
Target Start/End: Complemental strand, 13015514 - 13015382
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    |||||| |||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13015514 attaagatgtgacatgtggcacatactttaaaaaatatatatcaaataaaatatttataaagtaacattggtatgtggcacactcttattggtcaatgtt 13015415  T
Q  372 atataacattggtaccttaatggtacacaagtg 404  Q
    |||||||||||||||||||||||||||||||||    
T  13015414 atataacattggtaccttaatggtacacaagtg 13015382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 274 - 410
Target Start/End: Original strand, 13421050 - 13421186
Alignment:
Q  274 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 373  Q
    ||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||  |||||||||||| ||||| ||||    
T  13421050 taaggtgtgtcatgtggcatacactttaaaaaacatatattaaataaagcatttataaagtaacattgatatttgatacactcttattgatcaatgttat 13421149  T
Q  374 ataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||| |||||||||||||||||||||||||||    
T  13421150 ataacattgataccttaatggtacacaagtgatgtcc 13421186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 278 - 361
Target Start/End: Complemental strand, 37881268 - 37881185
Alignment:
Q  278 gtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttatt 361  Q
    |||| |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37881268 gtgtaccatgtggcacacattttgaaaaacatatatcaaataaaatatttataaagtaacattggtatgtggcacactcttatt 37881185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 287 - 405
Target Start/End: Original strand, 33858592 - 33858709
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 386  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||||  ||||||  ||||||||    
T  33858592 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatgatatatactattggtac 33858690  T
Q  387 cttaatggtacacaagtga 405  Q
    |||||||||||||| ||||    
T  33858691 cttaatggtacacaggtga 33858709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 279 - 404
Target Start/End: Complemental strand, 1826384 - 1826260
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| || || ||||||| ||||||| ||| |||||||| ||||  ||||  |||||| |    
T  1826384 tgtgccatgtggcacatactttaaaaaa-atatatcaaataaagcatctacaaagtaatattggtaggtgacacactctaattgaccaatggtatatacc 1826286  T
Q  379 attggtaccttaatggtacacaagtg 404  Q
    |||||||| |||||||||||||||||    
T  1826285 attggtactttaatggtacacaagtg 1826260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 404
Target Start/End: Original strand, 11607588 - 11607704
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 386  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||| ||||||| |||||||||| | ||||||||||  |||||| |||||||||    
T  11607588 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggtaggtggcacactataattggtcaatggtatataccattggtac 11607686  T
Q  387 cttaatggtacacaagtg 404  Q
    |||||||||| |||||||    
T  11607687 cttaatggtatacaagtg 11607704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 303 - 404
Target Start/End: Original strand, 19357330 - 19357431
Alignment:
Q  303 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaag 402  Q
    |||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||  |||||| |||||||||| ||||||||||||||    
T  19357330 aaaaaatatatcaaataaagcatttataaagtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaag 19357429  T
Q  403 tg 404  Q
    ||    
T  19357430 tg 19357431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 299 - 404
Target Start/End: Complemental strand, 9827894 - 9827789
Alignment:
Q  299 ttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtaca 398  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||| |||| ||||||| ||||   ||   |||||| |||||||||||||||||||||    
T  9827894 ttaaaaaagatatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtaca 9827795  T
Q  399 caagtg 404  Q
    ||||||    
T  9827794 caagtg 9827789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 287 - 404
Target Start/End: Original strand, 39570097 - 39570213
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 386  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| ||| |||||||| ||||| ||||  |||||| ||||| |||    
T  39570097 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatggtatataccattgatac 39570195  T
Q  387 cttaatggtacacaagtg 404  Q
     |||||| ||||||||||    
T  39570196 tttaatgatacacaagtg 39570213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 385
Target Start/End: Complemental strand, 10293004 - 10292893
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    |||||||||||||| ||||||||| |||||||||| ||||  ||||||||  | ||| ||| ||||||| ||| |||||||| ||||||||| |||| ||    
T  10293004 attaaggtgtgccacgtggcacaccctttaaaaaaaatat--caaataaaacacttacaaaataacattagtacgtggcacattcttattggccaatgtt 10292907  T
Q  372 atataacattggta 385  Q
    ||||||||||||||    
T  10292906 atataacattggta 10292893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 389
Target Start/End: Complemental strand, 33271739 - 33271630
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    ||||||| ||||| ||  |||||||||| ||||||||||||||| |||||| ||||||||||| ||  || |||||||| ||||| ||||  |||||| |    
T  33271739 tgtgccacgtggcgcatcctttaaaaaa-atatatcaaataaagcatttatcaagtaacattgatagatgacacactctaattggccaatgatatatatc 33271641  T
Q  379 attggtacctt 389  Q
    |||||||||||    
T  33271640 attggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 42148263 - 42148201
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggc 350  Q
    |||| |||| |||||||||| ||||||||||||||  ||||||||||||||||||||| |||||    
T  42148263 gtggtacaccctttaaaaaa-atatatcaaataaaacatttataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 410
Target Start/End: Complemental strand, 35622878 - 35622811
Alignment:
Q  343 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||    
T  35622878 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 35622811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 35622939 - 35622990
Alignment:
Q  359 attggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    |||||||||| |||||||||||||||| |  ||||||||||||||| |||||    
T  35622939 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtcc 35622990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 272 - 410
Target Start/End: Complemental strand, 47186308 - 47186170
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  47186308 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgtt 47186209  T
Q  372 atataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  47186208 atataacattggtaccttaatggtacacaagtggtgtcc 47186170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 272 - 411
Target Start/End: Original strand, 31187108 - 31187247
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31187108 attaaggtgtgacatgtggcacacactttaaaaaatatatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgtt 31187207  T
Q  372 atataacattggtaccttaatggtacacaagtgatgtcca 411  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  31187208 atataacattggtaccttaatggtacataagtggtgtcca 31187247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 272 - 411
Target Start/End: Complemental strand, 42664806 - 42664667
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  42664806 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgtt 42664707  T
Q  372 atataacattggtaccttaatggtacacaagtgatgtcca 411  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  42664706 atataactttggtaccttaatggtacacaagtggtgtcca 42664667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 272 - 409
Target Start/End: Original strand, 34029329 - 34029466
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    |||||||||||  ||||| |||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||| ||||| ||    
T  34029329 attaaggtgtgatatgtgacacacactttaaaaaacatatatcaaataaaacatttataaagtaacattagtatgtggcacactcttattgatcaatgtt 34029428  T
Q  372 atataacattggtaccttaatggtacacaagtgatgtc 409  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  34029429 atataacattggtaccttaatggtaaacaagtggtgtc 34029466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 292 - 405
Target Start/End: Complemental strand, 50934613 - 50934500
Alignment:
Q  292 acacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaa 391  Q
    |||| ||||||| || ||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||| ||||  |||||| ||||||||||||||    
T  50934613 acaccctttaaataaaatatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaa 50934514  T
Q  392 tggtacacaagtga 405  Q
    ||||||||||||||    
T  50934513 tggtacacaagtga 50934500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 287 - 404
Target Start/End: Complemental strand, 44380371 - 44380255
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 386  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||||||||| |||| || ||| |||||| | ||||||||||| |||||| |||||||||    
T  44380371 gtggcacaccctttaaaaaag-tatatcaaataaagcatttataaagtaatattgataggtgacacactataattggtcaatagtatataccattggtac 44380273  T
Q  387 cttaatggtacacaagtg 404  Q
    ||||||||||||||||||    
T  44380272 cttaatggtacacaagtg 44380255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 283 - 404
Target Start/End: Complemental strand, 47426471 - 47426351
Alignment:
Q  283 ccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattg 382  Q
    ||||||||||||| |||||||||| ||||||||||||||| || ||||||||||||||| || ||| |||||||| ||||| ||||  ||||||  ||||    
T  47426471 ccatgtggcacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattgataggtgacacactctaattggccaatggtatatactattg 47426373  T
Q  383 gtaccttaatggtacacaagtg 404  Q
    ||||||||||||||||||||||    
T  47426372 gtaccttaatggtacacaagtg 47426351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 279 - 406
Target Start/End: Complemental strand, 33509805 - 33509679
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    ||||||||||||||||  |||||||||| ||| ||||||||||| || |||||||||| ||||||| |||||||||||| ||||||||||  ||||||      
T  33509805 tgtgccatgtggcacatcctttaaaaaa-atacatcaaataaagcatctataaagtaatattggtaggtggcacactctaattggtcaatgatatatact 33509707  T
Q  379 attggtaccttaatggtacacaagtgat 406  Q
    ||| ||||||||||||||||||| ||||    
T  33509706 attagtaccttaatggtacacaaatgat 33509679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 21963073 - 21963134
Alignment:
Q  352 cactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtccatc 413  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||    
T  21963073 cactcttattggtcaatgttatataacattgataccttaatggtacataagtgatgtccatc 21963134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 392
Target Start/End: Complemental strand, 37742850 - 37742738
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||| |||  ||| |||||||||||| |||||| ||||| ||||  ||||  |||||| |    
T  37742850 tgtgccacgtggcacactctttaaaaaa-atatatcaaataaagcattggtaatgtaacattggtaggtggcatactctaattgaccaatgatatatacc 37742752  T
Q  379 attggtaccttaat 392  Q
    ||||||||||||||    
T  37742751 attggtaccttaat 37742738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 6023071 - 6022998
Alignment:
Q  280 gtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcaca 353  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||| ||| ||| ||||||| ||||||||||||    
T  6023071 gtgccacgtggcacaccctttaaaaaatatatatcaaataaagtacttacaaaataacattagtatgtggcaca 6022998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 297 - 397
Target Start/End: Complemental strand, 35094655 - 35094554
Alignment:
Q  297 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc--ttattggtcaatattatataacattggtaccttaatgg 394  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||||  | ||| ||||||  |||||| || |||||| |||||||    
T  35094655 ctttaaaaaa-atatatcaaataaaatatttataaagtaacattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatgg 35094557  T
Q  395 tac 397  Q
    |||    
T  35094556 tac 35094554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 403
Target Start/End: Original strand, 32319468 - 32319534
Alignment:
Q  337 cattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagt 403  Q
    |||| ||| |||||||||||| ||||| ||||  |||||| ||||||||||||||||||||||||||    
T  32319468 catttgtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagt 32319534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 403
Target Start/End: Original strand, 39498744 - 39498838
Alignment:
Q  309 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagt 403  Q
    ||||| ||||||| |||||||||| |||||| | || ||| |||||| | ||||  ||||| |||||| ||||||||| ||||||||||||||||    
T  39498744 tatattaaataaaatatttataaaataacatcgataggtgacacactttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 404
Target Start/End: Original strand, 10018671 - 10018736
Alignment:
Q  339 ttggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    |||||| |||||||||| ||||||  ||||  |||||||||||||||| |||||||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtg 10018736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 410
Target Start/End: Complemental strand, 53440608 - 53440541
Alignment:
Q  343 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||||| | |||||||| | |||||||||||||||| |  ||||||||||||||| |||||    
T  53440608 tatgtggcacactttcattggtcagtgttatataacattggtatcccaatggtacacaagtggtgtcc 53440541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 404
Target Start/End: Original strand, 10179868 - 10179933
Alignment:
Q  339 ttggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    |||||| |||||||||||| ||||  ||||  |||||| ||||||||| |||||||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtg 10179933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 362
Target Start/End: Complemental strand, 17466390 - 17466316
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattg 362  Q
    |||||| || |||||||||| ||||||||| ||||  |||||||||||||||||| || ||| |||||||| ||||    
T  17466390 gtggcataccctttaaaaaa-atatatcaactaaatcatttataaagtaacattgataggtgacacactctaattg 17466316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 410
Target Start/End: Complemental strand, 42273396 - 42273329
Alignment:
Q  343 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||    
T  42273396 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 42273329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Complemental strand, 43689451 - 43689404
Alignment:
Q  357 ttattggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    |||||||||||| |||||||||||||||| |  |||||||||||||||    
T  43689451 ttattggtcaatgttatataacattggtatcacaatggtacacaagtg 43689404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 410
Target Start/End: Complemental strand, 46489703 - 46489652
Alignment:
Q  359 attggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    |||||||||| |||||||||||||||| |  ||||||||||||||| |||||    
T  46489703 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtcc 46489652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 410
Target Start/End: Original strand, 46489764 - 46489831
Alignment:
Q  343 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||    
T  46489764 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 46489831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 404
Target Start/End: Original strand, 10123211 - 10123276
Alignment:
Q  339 ttggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    |||||| |||||||||| ||||||  || |  |||||||||||| ||| |||||||||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtg 10123276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 34955119 - 34955067
Alignment:
Q  359 attggtcaatattatataacattggtaccttaatggtacacaagtgatgtcca 411  Q
    ||||| |||| |||||||||||||||| |  ||||||||||||||| ||||||    
T  34955119 attggccaatgttatataacattggtatcccaatggtacacaagtggtgtcca 34955067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 272 - 410
Target Start/End: Complemental strand, 52012911 - 52012773
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||| ||    
T  52012911 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgtt 52012812  T
Q  372 atataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  52012811 atataacattggtaccttaatggtacacaagtggtgtcc 52012773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 272 - 404
Target Start/End: Original strand, 9799401 - 9799533
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    ||||||||||| |||||| ||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||| ||||||||| ||    
T  9799401 attaaggtgtgacatgtgacacacactttaaaaaacatatattaaataaaacatttataaagtaacattggtatgtggcacattcttgttggtcaatgtt 9799500  T
Q  372 atataacattggtaccttaatggtacacaagtg 404  Q
    ||||||||||||||||||||||||| |||||||    
T  9799501 atataacattggtaccttaatggtatacaagtg 9799533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 272 - 411
Target Start/End: Complemental strand, 47943292 - 47943152
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtc-aatat 370  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| | ||||||||| |||||    
T  47943292 attaaggtgtgacatgtggcacacattttaaaaaacatatatcaaataaaatatttataaaataatattggtatgtggcacatttttattggtcaaatat 47943193  T
Q  371 tatataacattggtaccttaatggtacacaagtgatgtcca 411  Q
    |||||||||||||||  ||||||||||||||||| ||||||    
T  47943192 tatataacattggtattttaatggtacacaagtggtgtcca 47943152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 279 - 405
Target Start/End: Original strand, 33249420 - 33249545
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    ||||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||| ||||  |||||| |    
T  33249420 tgtgccatgtggcacaccctttaaaaat-atatatcaaataaagcatttataaagtaacattggtaggtgacacactctaattggccaattgtatatacc 33249518  T
Q  379 attggtaccttaatggtacacaagtga 405  Q
    ||| |||||||||||||||||||||||    
T  33249519 atttgtaccttaatggtacacaagtga 33249545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 279 - 404
Target Start/End: Complemental strand, 12473829 - 12473705
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    |||| |||||| ||||| |||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| ||||  |||||| |    
T  12473829 tgtgtcatgtgccacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatatacc 12473731  T
Q  379 attggtaccttaatggtacacaagtg 404  Q
    |||||||||||||||||| |||||||    
T  12473730 attggtaccttaatggtatacaagtg 12473705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 279 - 404
Target Start/End: Complemental strand, 12528238 - 12528114
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    |||| |||||| ||||| |||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| ||||  |||||| |    
T  12528238 tgtgtcatgtgccacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatatacc 12528140  T
Q  379 attggtaccttaatggtacacaagtg 404  Q
    |||||||||||||||||| |||||||    
T  12528139 attggtaccttaatggtatacaagtg 12528114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 279 - 396
Target Start/End: Complemental strand, 21260919 - 21260803
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    ||||||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||| ||| |||||||| ||||| ||||  |||||| |    
T  21260919 tgtgccatgtggcacaccctttaaaaaa-atatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatgatatatatc 21260821  T
Q  379 attggtaccttaatggta 396  Q
    ||||||||||||||||||    
T  21260820 attggtaccttaatggta 21260803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 46720023 - 46719953
Alignment:
Q  312 atcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattg 382  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  46720023 atcaaataaagtatttataaagtaacatttgtatgtggcacactcttattggtcaatgttatataacattg 46719953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 279 - 404
Target Start/End: Complemental strand, 22343462 - 22343338
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    |||| |||||||||||  |||||||| | ||||||||||||||| |||||||||||||||||| ||  || |||||||| ||||||||||  |||||| |    
T  22343462 tgtgtcatgtggcacatcctttaaaata-atatatcaaataaagcatttataaagtaacattgatagatgacacactctaattggtcaatgatatatacc 22343364  T
Q  379 attggtaccttaatggtacacaagtg 404  Q
    |||| |||||||||||||||||||||    
T  22343363 attgataccttaatggtacacaagtg 22343338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 404
Target Start/End: Original strand, 35869625 - 35869741
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 386  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||| ||||||||||||| |||||||| | | ||||||||||  |||||| |||||||||    
T  35869625 gtggcacaccctttaaaaaag-tatatcaaataaaacatttatatagtaacattggtaggtggcacattataattggtcaatggtatataccattggtac 35869723  T
Q  387 cttaatggtacacaagtg 404  Q
    ||||||||||||||||||    
T  35869724 cttaatggtacacaagtg 35869741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 288 - 404
Target Start/End: Complemental strand, 51812030 - 51811915
Alignment:
Q  288 tggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtacc 387  Q
    |||||||| |||||||||| |||||||||| |||  ||||||||||||||||||||| |||||| ||||| ||||| ||||| |||||| | ||| ||||    
T  51812030 tggcacaccctttaaaaaa-atatatcaaaaaaaaaatttataaagtaacattggtaggtggcatactctaattggccaataatatatatctttgatacc 51811932  T
Q  388 ttaatggtacacaagtg 404  Q
    |||||||||||| ||||    
T  51811931 ttaatggtacacgagtg 51811915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 311 - 404
Target Start/End: Original strand, 52910126 - 52910219
Alignment:
Q  311 tatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||| | ||||| ||||  ||||||||||||||||| | ||||||||||||||    
T  52910126 tatcaaataaagcatttataaagtaatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 404
Target Start/End: Original strand, 49999662 - 49999758
Alignment:
Q  308 atatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||||| ||||  ||||   | |||||||| ||| ||| ||||||||||||||    
T  49999662 atatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtg 49999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 404
Target Start/End: Complemental strand, 55590559 - 55590483
Alignment:
Q  328 ataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    ||||||||||||||||| ||| |||||| | |||| |||||  |||||| |||||||||||||||||||||||||||    
T  55590559 ataaagtaacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtg 55590483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 405
Target Start/End: Original strand, 34829168 - 34829254
Alignment:
Q  319 aaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtga 405  Q
    |||| ||||||||||||||||||||| ||| |||||| | ||||| || |  |||||| ||||||||||||||| ||||| ||||||    
T  34829168 aaagcatttataaagtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtga 34829254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 46720249 - 46720200
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaa-aaaacatatatcaaataa 320  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  46720249 attaaggtgtgtcatgtggcacacactttaaaaaaacatatatcaaataa 46720200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 412
Target Start/End: Original strand, 54277631 - 54277700
Alignment:
Q  343 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtccat 412  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||||    
T  54277631 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtccat 54277700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 410
Target Start/End: Complemental strand, 28092791 - 28092740
Alignment:
Q  359 attggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    |||||||||| |||||||||||||||| |  ||||||||||||||| |||||    
T  28092791 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtcc 28092740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 410
Target Start/End: Original strand, 28092852 - 28092919
Alignment:
Q  343 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||    
T  28092852 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 28092919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 401
Target Start/End: Complemental strand, 49998541 - 49998486
Alignment:
Q  346 gtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaa 401  Q
    ||||||||| || ||||| ||||  ||||||| |||||||||||||||||||||||    
T  49998541 gtggcacaccctaattggccaatgatatataatattggtaccttaatggtacacaa 49998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 33174636 - 33174581
Alignment:
Q  281 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacat 339  Q
    ||||| ||||||||| |||||||||   |||||||||||||  ||||||||||||||||    
T  33174636 tgccacgtggcacaccctttaaaaa---tatatcaaataaaacatttataaagtaacat 33174581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 272 - 410
Target Start/End: Original strand, 8809678 - 8809816
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  8809678 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtacgtggcacactcttattggtcaatgtt 8809777  T
Q  372 atataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  8809778 atataacattggtaccttaatggtacacaagtggtgtcc 8809816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 272 - 404
Target Start/End: Complemental strand, 35998385 - 35998253
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||  | ||||||| |||||||| |||||||||||||||||||  ||||| ||    
T  35998385 attaagatgtgccatgtggcacacactttaaaaaacatatataaaataaaacacttataaaataacattgatatgtggcacactcttattaatcaatgtt 35998286  T
Q  372 atataacattggtaccttaatggtacacaagtg 404  Q
    ||||||||||||||||||||||||| |||||||    
T  35998285 atataacattggtaccttaatggtatacaagtg 35998253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 279 - 404
Target Start/End: Original strand, 29119370 - 29119494
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| || |||||||||||| || || |||||||||||| ||||| ||||  |||||| |    
T  29119370 tgtgccatgtggcacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacaatgataggtggcacactctaattggccaatggtatatacc 29119468  T
Q  379 attggtaccttaatggtacacaagtg 404  Q
    ||||||||||||||||||||||||||    
T  29119469 attggtaccttaatggtacacaagtg 29119494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 279 - 404
Target Start/End: Complemental strand, 32676261 - 32676137
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    ||||||||||||||||  |||||||||| ||||||||||||||| ||||||||||||||||||||| ||||  || ||| ||||| ||||  |||||| |    
T  32676261 tgtgccatgtggcacatgctttaaaaaa-atatatcaaataaagcatttataaagtaacattggtaggtggtgcattctaattggccaatggtatatacc 32676163  T
Q  379 attggtaccttaatggtacacaagtg 404  Q
    ||||||||||||||||||||||||||    
T  32676162 attggtaccttaatggtacacaagtg 32676137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 279 - 404
Target Start/End: Complemental strand, 2569161 - 2569038
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    |||||||  |||||||| ||||||||||  |||||||||||||| |||  ||| |||||||||||| |||||||||||| |||||  |||  |||||| |    
T  2569161 tgtgccacatggcacaccctttaaaaaa--tatatcaaataaagcattggtaatgtaacattggtaggtggcacactctaattggcaaatgatatatacc 2569064  T
Q  379 attggtaccttaatggtacacaagtg 404  Q
    ||||||||||||||||||||||||||    
T  2569063 attggtaccttaatggtacacaagtg 2569038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 344 - 409
Target Start/End: Original strand, 18056134 - 18056199
Alignment:
Q  344 atgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtc 409  Q
    |||||||||||| | |||||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  18056134 atgtggcacactttcattggtcaatattatataacattggtagtttaatggtacacaagtggtgtc 18056199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 398
Target Start/End: Complemental strand, 35534535 - 35534413
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    ||||||||||| |||||||||||| ||||||||||    ||| |||||||  | ||||||| | ||||| |||||||||||||||| | ||  |||| ||    
T  35534535 attaaggtgtgtcatgtggcacaccctttaaaaaa----tattaaataaaacacttataaattgacattagtatgtggcacactctcagtgtccaatgtt 35534440  T
Q  372 atataacattggtaccttaatggtaca 398  Q
    |||||||||||||| ||||||| ||||    
T  35534439 atataacattggtatcttaatgataca 35534413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 404
Target Start/End: Complemental strand, 25161402 - 25161310
Alignment:
Q  312 atcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    ||||||||||  |||||||||||||||||| || |||||||||| | ||||||||||  |||||| |||||  || |||||||||||||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtg 25161310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 404
Target Start/End: Complemental strand, 6223148 - 6223052
Alignment:
Q  308 atatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    |||||||||||||| || ||||||| |||||||| ||| || |||||  | |||| |||||  |||||||||||| ||| |||||||||||||||||    
T  6223148 atatatcaaataaaatacttataaaataacattgatatatgacacaccttaattgatcaatgatatataacattgatactttaatggtacacaagtg 6223052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 392
Target Start/End: Complemental strand, 8462245 - 8462141
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 386  Q
    ||||||| | ||||||||||  ||||| |||||||  ||||||||| ||||||||||| |||||||||| | |||| |||||  |||||| |||||||||    
T  8462245 gtggcacgccctttaaaaaag-tatattaaataaaacatttataaaataacattggtaggtggcacactataattgatcaatgatatataccattggtac 8462147  T
Q  387 cttaat 392  Q
     |||||    
T  8462146 tttaat 8462141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 16679829 - 16679868
Alignment:
Q  365 caatattatataacattggtaccttaatggtacacaagtg 404  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  16679829 caatagtatataacattggtaccttaatggtacacaagtg 16679868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 46435571 - 46435623
Alignment:
Q  352 cactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    |||||| ||||| ||||  |||||| |||||||||||||||||||||||||||    
T  46435571 cactctaattggccaattgtatataccattggtaccttaatggtacacaagtg 46435623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 368
Target Start/End: Original strand, 3688917 - 3688972
Alignment:
Q  313 tcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaat 368  Q
    |||||||||  ||||||||||||||||||||| || | ||||||| ||||||||||    
T  3688917 tcaaataaaacatttataaagtaacattggtaggttgtacactctaattggtcaat 3688972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 401
Target Start/End: Original strand, 7214500 - 7214578
Alignment:
Q  323 tatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaa 401  Q
    |||||||||||||| || | || ||| |||||||| ||||  ||||| ||||||  ||| |||||||||||||||||||    
T  7214500 tatttataaagtaatatcgataggtgacacactctaattgaccaataatatatactattagtaccttaatggtacacaa 7214578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 5581326 - 5581281
Alignment:
Q  359 attggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    |||||||||| |||||||||||| ||| | ||||||||||||||||    
T  5581326 attggtcaatgttatataacattagtatcctaatggtacacaagtg 5581281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 272 - 410
Target Start/End: Complemental strand, 34245700 - 34245562
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  34245700 attaaggtgtgtcatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacacttttattggtcaatgtt 34245601  T
Q  372 atataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||  ||||||||||||||||||||| |||||    
T  34245600 atataacattaataccttaatggtacacaagtggtgtcc 34245562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 272 - 404
Target Start/End: Complemental strand, 11113684 - 11113557
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    |||||||||||||||||||| ||  ||||||||||     ||||||||||| | ||| ||||||||||| ||||||| |||||||||||| |||||| ||    
T  11113684 attaaggtgtgccatgtggcgcatcctttaaaaaa-----atcaaataaagcacttacaaagtaacattagtatgtgacacactcttattagtcaatgtt 11113590  T
Q  372 atataacattggtaccttaatggtacacaagtg 404  Q
    ||||| |||||||||||||||||||||||||||    
T  11113589 atatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 279 - 405
Target Start/End: Original strand, 1211890 - 1212015
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||| ||  ||||||||||||||  | ||||||||| || ||| | ||||  |||||| |    
T  1211890 tgtgccacgtggcacaccctttaaaaaa-atatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatatacc 1211988  T
Q  379 attggtaccttaatggtacacaagtga 405  Q
    |||||||||||||||||||||||||||    
T  1211989 attggtaccttaatggtacacaagtga 1212015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 404
Target Start/End: Original strand, 5403940 - 5404046
Alignment:
Q  297 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggta 396  Q
    |||||||||| ||||||||||||||  || |||||||||||||||||| |||||| ||||| | ||  ||||| |||||| |||| ||||||||||||||    
T  5403940 ctttaaaaaa-atatatcaaataaaacatctataaagtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggta 5404038  T
Q  397 cacaagtg 404  Q
    ||||||||    
T  5404039 cacaagtg 5404046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 400
Target Start/End: Original strand, 32644888 - 32645002
Alignment:
Q  284 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattgg 383  Q
    |||||||||||| |||||||||| ||||| |||||||||||||| |||||||||||| ||| ||| |||||  | ||||| ||||  ||||||  || |     
T  32644888 catgtggcacaccctttaaaaaa-atataacaaataaagtattt-taaagtaacatttgtaggtgacacaccttaattggccaatgatatatactatcga 32644985  T
Q  384 taccttaatggtacaca 400  Q
    || ||||||||||||||    
T  32644986 tatcttaatggtacaca 32645002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 11753232 - 11753168
Alignment:
Q  340 tggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    ||||| |||| ||||||| ||||| | ||  |||||| |||||||||||||||||||||||||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacacaagtg 11753168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 410
Target Start/End: Complemental strand, 31030154 - 31030087
Alignment:
Q  343 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| |  || ||||| |||||| |||||    
T  31030154 tatgtggcacactgttattgaccaatattatataacattggtatcccaacggtacgcaagtggtgtcc 31030087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 272 - 410
Target Start/End: Complemental strand, 1514936 - 1514798
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    ||||||||||| ||| ||| ||||| ||||||||| ||||||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||| ||    
T  1514936 attaaggtgtgacatatggtacacattttaaaaaatatatatcaaataaaacatttataaagtaacattggtatgtggtacactcttattgatcaatgtt 1514837  T
Q  372 atataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  1514836 atataacattggtaccttaatggtacacaagtggtgtcc 1514798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 287 - 398
Target Start/End: Complemental strand, 18168503 - 18168392
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 386  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| |||||  |||||| |||||||||    
T  18168503 gtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtac 18168404  T
Q  387 cttaatggtaca 398  Q
    ||||||||||||    
T  18168403 cttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 287 - 398
Target Start/End: Complemental strand, 18632060 - 18631949
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 386  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| |||||  |||||| |||||||||    
T  18632060 gtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtac 18631961  T
Q  387 cttaatggtaca 398  Q
    ||||||||||||    
T  18631960 cttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 404
Target Start/End: Original strand, 41179609 - 41179733
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    ||||||||||||||||  | |||||||| |||||| |||||||  |||||||||||||||| |||| ||| |||||| | ||||| ||||  |||||| |    
T  41179609 tgtgccatgtggcacatccattaaaaaa-atatattaaataaaacatttataaagtaacatcggtaggtgacacactttaattggccaatgatatatatc 41179707  T
Q  379 attggtaccttaatggtacacaagtg 404  Q
    ||||||||||||||||||||||||||    
T  41179708 attggtaccttaatggtacacaagtg 41179733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 279 - 404
Target Start/End: Original strand, 24337876 - 24338000
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    ||||| ||||||||||| |||||||||  ||||||||||||||| || ||||||||||||||||||  ||||||||||| ||||  | ||  |||||| |    
T  24337876 tgtgctatgtggcacaccctttaaaaat-atatatcaaataaagcatctataaagtaacattggtagatggcacactctaattgaccgatggtatatacc 24337974  T
Q  379 attggtaccttaatggtacacaagtg 404  Q
    |||| ||||||||| |||||||||||    
T  24337975 attgctaccttaatagtacacaagtg 24338000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 397
Target Start/End: Original strand, 4708353 - 4708470
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    ||||||| ||||||||| |||||||||  ||||||||||||||  ||||||||||||||||||||| ||| |||||| | |||||   ||  |||||  |    
T  4708353 tgtgccacgtggcacaccctttaaaaat-atatatcaaataaaacatttataaagtaacattggtaggtgacacactttaattggcgcatgatatatgcc 4708451  T
Q  379 attggtaccttaatggtac 397  Q
    |||||||||||| ||||||    
T  4708452 attggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 404
Target Start/End: Original strand, 11254082 - 11254197
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 386  Q
    ||||||||| |||||||||   |||||||||||||  ||||||||||||||||||||| |||| | |||  || ||||||||  |||||| ||||||||     
T  11254082 gtggcacaccctttaaaaatg-tatatcaaataaaacatttataaagtaacattggtaggtggtatact-ataatggtcaatgatatatatcattggtaa 11254179  T
Q  387 cttaatggtacacaagtg 404  Q
     |||||||||||||||||    
T  11254180 tttaatggtacacaagtg 11254197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 405
Target Start/End: Original strand, 32825874 - 32826006
Alignment:
Q  272 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 371  Q
    |||||| |||| |||||| ||||  |||| ||||| ||||||||||||||  |  |||||| |||||||| |||||| || ||||| ||||| ||||  |    
T  32825874 attaagatgtgtcatgtgacacaaccttttaaaaa-atatatcaaataaaacacatataaaataacattgatatgtgacatactctaattggccaatggt 32825972  T
Q  372 atataacattggtaccttaatggtacacaagtga 405  Q
    ||| ||||||| ||| ||||||||||||||||||    
T  32825973 atacaacattgatactttaatggtacacaagtga 32826006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 291 - 404
Target Start/End: Complemental strand, 34306 - 34195
Alignment:
Q  291 cacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtacctta 390  Q
    ||||| ||||||||||  ||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||||| |||||| |||||||||||||    
T  34306 cacaccctttaaaaaa--tatatcaaataaaatatttataaagtaatattggtaagtggcacactctaattggccaataatatataccattggtacctta 34209  T
Q  391 atggtacacaagtg 404  Q
    ||||||||||||||    
T  34208 atggtacacaagtg 34195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 287 - 404
Target Start/End: Complemental strand, 35341653 - 35341537
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 386  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||||  |||||| |||||||||    
T  35341653 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatggtatatatcattggtac 35341555  T
Q  387 cttaatggtacacaagtg 404  Q
    ||||||||||||||||||    
T  35341554 cttaatggtacacaagtg 35341537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 284 - 404
Target Start/End: Complemental strand, 48250274 - 48250155
Alignment:
Q  284 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattgg 383  Q
    ||||| ||| || |||||||||| | ||||||||||||| || |||||||||||||||||| |||||||||||| ||||  ||||  |||||| ||||||    
T  48250274 catgtagcataccctttaaaaaaaa-atatcaaataaagcatctataaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattgg 48250176  T
Q  384 taccttaatggtacacaagtg 404  Q
    |||||||||||||||||||||    
T  48250175 taccttaatggtacacaagtg 48250155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 404
Target Start/End: Complemental strand, 48072512 - 48072390
Alignment:
Q  279 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 378  Q
    ||||||| ||||||||| |||||||||| ||| |||||||||| |||||||||| ||||||||  |||||||||||||| |||| |||||  ||||  |     
T  48072512 tgtgccacgtggcacaccctttaaaaaa-atacatcaaataaaatatttataaaataacattgaaatgtggcacactctaattgatcaatggtatacta- 48072415  T
Q  379 attggtaccttaatggtacacaagtg 404  Q
     ||||||||||||| |||||||||||    
T  48072414 -ttggtaccttaatagtacacaagtg 48072390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 31306951 - 31307041
Alignment:
Q  312 atcaaataaagtatttataaagtaacattggtatgtggcacactct-tattggtcaatattatataacattggtaccttaatggtacacaa 401  Q
    ||||||||||| ||||||||||||||||||||| || ||||||| |  ||||| ||||  |||||| ||||| ||| ||||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacacaa 31307041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 32694624 - 32694677
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattg 341  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  32694624 gtggcacaccctttaaaaaa-atatatcaaataaagaatttataaagtaacattg 32694677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 405
Target Start/End: Original strand, 13051 - 13177
Alignment:
Q  279 tgtgccatgtggcaca-cactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataa 377  Q
    ||||||| |||||||| | |||||||||| ||||||||||||||| ||  ||||||||||||||  | ||||||||| || ||| | ||||  ||||||     
T  13051 tgtgccacgtggcacaaccctttaaaaaa-atatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatatac 13149  T
Q  378 cattggtaccttaatggtacacaagtga 405  Q
    ||||||||||||||||||||||||||||    
T  13150 cattggtaccttaatggtacacaagtga 13177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 404
Target Start/End: Original strand, 23168 - 23263
Alignment:
Q  303 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaag 402  Q
    |||| |||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||||  ||||      | ||||||||||||||||||||    
T  23168 aaaaaatatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatgatata------tcgtaccttaatggtacacaag 23261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 23139 - 23094
Alignment:
Q  359 attggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    ||||| ||||| |||||| |||||||||||||||| ||||||||||    
T  23139 attggccaatagtatataccattggtaccttaatgatacacaagtg 23094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 404
Target Start/End: Complemental strand, 11311 - 11196
Alignment:
Q  287 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 386  Q
    ||||||||| |||||||||   |||||||||||||  ||||||||||||||||||||| |||| | |||  || ||||||||  |||||| ||||||||     
T  11311 gtggcacaccctttaaaaatg-tatatcaaataaaacatttataaagtaacattggtaggtggtatact-ataatggtcaatgatatatatcattggtaa 11214  T
Q  387 cttaatggtacacaagtg 404  Q
     |||||||||||||||||    
T  11213 tttaatggtacacaagtg 11196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 6486 - 6425
Alignment:
Q  343 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 404  Q
    ||||||||||||  ||||||| |||| ||||||||||||| || |  |||||||||||||||    
T  6486 tatgtggcacacctttattggccaatgttatataacattgatatcccaatggtacacaagtg 6425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 28119 - 28164
Alignment:
Q  365 caatattatataacattggtaccttaatggtacacaagtgatgtcc 410  Q
    |||||||||||||||| |||| || ||||||||||||||| |||||    
T  28119 caatattatataacatcggtatctcaatggtacacaagtggtgtcc 28164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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