View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_380 (Length: 250)

Name: NF10145A_low_380
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_380
NF10145A_low_380
[»] chr2 (2 HSPs)
chr2 (9-243)||(37766010-37766244)
chr2 (16-226)||(37799519-37799729)
[»] scaffold0280 (1 HSPs)
scaffold0280 (25-218)||(16214-16407)
[»] chr5 (1 HSPs)
chr5 (44-218)||(38388077-38388258)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 37766010 - 37766244
Alignment:
Q  9 gctggtcggacgagatttcagcagggtcctaacaaccatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37766010 gctggtcggacgagatttcagcagggtcctaacaaccatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaa 37766109  T
Q  109 gccgatgcttatagctacggaatgatgcttttcgaggttgtatcaggtaggaggaactccgatccttcagaagatggtcaagttactttctttcctacct 208  Q
    || |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37766110 gctgatgtttatagctacggaatgatgcttttcgaggttgtatcgggtaggaggaactccgatccatcagaagatggtcaagttactttctttcctacct 37766209  T
Q  209 tagctgcaaaagtagttatagaaggtggaagtgtc 243  Q
    |||||||||||||||||||||||||||||||||||    
T  37766210 tagctgcaaaagtagttatagaaggtggaagtgtc 37766244  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 37799729 - 37799519
Alignment:
Q  16 ggacgagatttcagcagggtcctaacaaccatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaagccgatg 115  Q
    |||||||||||||| ||  |||| |||| ||||  |||| |||||||||| ||| | || |||||||| ||| | |  ||||| ||||||||| | ||||    
T  37799729 ggacgagatttcagaagaatccttacaaacatggaaggatcaagaggctatctttccccagagtggatatctagggctgctatcacagccaaatctgatg 37799630  T
Q  116 cttatagctacggaatgatgcttttcgaggttgtatcaggtaggaggaactccgatccttcagaagatggtcaagttactttctttcctaccttagctgc 215  Q
     ||| || || |||||||||||||| ||||||||||||||||  ||||| || ||||| || | |||||  |||  |||||||||||| ||||| |||||    
T  37799629 tttacagttatggaatgatgctttttgaggttgtatcaggtaaaaggaattctgatccatctgcagatgaccaaaatactttctttccaaccttggctgc 37799530  T
Q  216 aaaagtagtta 226  Q
     | ||||||||    
T  37799529 tacagtagtta 37799519  T

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Target: scaffold0280 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 16214 - 16407
Alignment:
Q  25 ttcagcagggtcctaacaaccatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaagccgatgcttatagct 124  Q
    |||||| ||||||| || ||||||||||||||||||||||| || ||||| ||||||||||| || || ||||| || || |||||||||| ||| ||||    
T  16214 ttcagccgggtcctcactaccatgagaggaacaagaggctatctagctccagagtggatttcaggagttgctataaccgctaaagccgatgtttacagct 16313  T
Q  125 acggaatgatgcttttcgaggttgtatcaggtaggaggaactccgatccttcagaagatggtcaagttactttctttcctaccttagctgcaaa 218  Q
    |||||||||||||||||||| | || |||||||| || |||||||||||||| |||||||| || ||||  |||||||||||||||||||||||    
T  16314 acggaatgatgcttttcgagctagtgtcaggtagaagaaactccgatccttctgaagatggccatgttagattctttcctaccttagctgcaaa 16407  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 218
Target Start/End: Original strand, 38388077 - 38388258
Alignment:
Q  44 ccatgagaggaacaagaggctaccttgctccgga---gtggatttctggcgtggctattacagccaaagccgatgcttatagctacggaatgatgctttt 140  Q
    |||||||||||||||||||||| || ||||| ||   ||||||||| || ||  |||| || || |||||||||| ||| | |||| |||||||||||||    
T  38388077 ccatgagaggaacaagaggctatctagctccagatgagtggatttcgggagtttctataaccgctaaagccgatgtttacaactacagaatgatgctttt 38388176  T
Q  141 cgaggttgtatcaggtaggaggaactccgatccttcag----aagatggtcaagttactttctttcctaccttagctgcaaa 218  Q
    |||| | || ||||| || || ||||| |||||||| |    ||||||| || ||||  ||||||||||| || ||||||||    
T  38388177 cgagctcgtgtcaggaagaagaaactctgatccttccgaattaagatggccatgttagattctttcctactttggctgcaaa 38388258  T

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