View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_381 (Length: 250)

Name: NF10145A_low_381
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_381
NF10145A_low_381
[»] chr1 (1 HSPs)
chr1 (20-239)||(24301046-24301265)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 24301046 - 24301265
Alignment:
Q  20 tcaatttagacatatcatattttatttccaaccctacaacctagtaaaatatctttaactttatgctcattcttgtaccaattttcatttgggcttcgaa 119  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  24301046 tcaacttagacatatcatattttatttccaaccatacaacctagtaaaatatctttaactttatgctcattcttgtaccaattttcacttgggctttgaa 24301145  T
Q  120 gcccgcagtgtgggttcggatgagcatctgtttagagctattgatgagcttttttcaactcaacgaggaaacttttcttcaacattgatcagagtccact 219  Q
    ||||||||||||||||  |||| ||| |||||| |||| ||| |||||||||  |   || ||||  |||||||||||||||||||||||||||||||||    
T  24301146 gcccgcagtgtgggttatgatgcgcacctgtttggagccatttatgagctttcatacgcttaacggagaaacttttcttcaacattgatcagagtccact 24301245  T
Q  220 ccaacacttccaacatattt 239  Q
    ||||||||||||||||||||    
T  24301246 ccaacacttccaacatattt 24301265  T

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