View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_383 (Length: 250)
Name: NF10145A_low_383
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_383 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 8074723 - 8074967
Alignment:
| Q |
6 |
gtcgaataatatacattttaacgtaggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaaagaagttaagccctca |
105 |
Q |
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| T |
8074723 |
gtcgaacactatacattttaacgtaggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaacgaagttaagccctca |
8074822 |
T |
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| Q |
106 |
aaaactgatttgcaatcactcattgcaaacctcaccatattagaatcactttccatagcatcattgaatagcttggaacgagtcggattttgtagaatta |
205 |
Q |
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| T |
8074823 |
aaaactgatttgcaatcactcattgcaaacctcaccatattagaatcactttccatagcatcattgaataacttggaatgagtcggattttgtaaaatta |
8074922 |
T |
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| Q |
206 |
aatcccataatggagtctcaaagattgtgaggtcctccattgatg |
250 |
Q |
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| T |
8074923 |
aatcccataatggagtctcaaagattgtgaggtcctccattgatg |
8074967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 8066288 - 8066525
Alignment:
| Q |
6 |
gtcgaataatatacattttaacgtaggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaaagaagttaagccctca |
105 |
Q |
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| T |
8066288 |
gtcgaacactatacattttaacgtaggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttatgccctca |
8066387 |
T |
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| Q |
106 |
aaaactgatttgcaatcactcattgcaaacctcaccatattagaatcactttccatagcatcattgaatagcttggaacgagtcggattttgtagaatta |
205 |
Q |
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| T |
8066388 |
aaaactgatttgcaatcactcattgcaaacctcatcatattagagtcactctccatagcatcattgaataactccgcgtaagccgaattttgttgcatga |
8066487 |
T |
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| Q |
206 |
aatcccataatggagtctcaaagattgtgaggtcctcc |
243 |
Q |
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| T |
8066488 |
aatcccataatgtagtatcgaagattgtgagatcctcc |
8066525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 4177445 - 4177512
Alignment:
| Q |
16 |
atacattttaacgtaggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatc |
83 |
Q |
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| T |
4177445 |
atacatttcaacttaggaaaagtctcacaaataattttaccagtggttccatttccaccaccaacatc |
4177512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 34951317 - 34951456
Alignment:
| Q |
31 |
ggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaaagaagttaagccctcaaaaactgatttgcaatcactcattg |
130 |
Q |
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| T |
34951317 |
ggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaacatcaaccaatgaaccaatcccttcaaaaacagaattacaatctctcaaag |
34951416 |
T |
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| Q |
131 |
caaacctcaccatattagaatcactttccatagcatcatt |
170 |
Q |
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| T |
34951417 |
ccaacctcacaacatgagaatcactttccatagcatcatt |
34951456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 34946846 - 34946985
Alignment:
| Q |
31 |
ggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaaagaagttaagccctcaaaaactgatttgcaatcactcattg |
130 |
Q |
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| T |
34946846 |
ggaaacgcctcacatataatcttagctgtgtttccagttccaccaccaacatcaaccaatgaaccaatcccttgaaaaacagacttacaatctctcaagg |
34946945 |
T |
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| Q |
131 |
caaacctcaccatattagaatcactttccatagcatcatt |
170 |
Q |
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| T |
34946946 |
ccaacctcacaacatgagaatcactttccatagcatcatt |
34946985 |
T |
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