View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_385 (Length: 250)

Name: NF10145A_low_385
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_385
NF10145A_low_385
[»] chr1 (36 HSPs)
chr1 (3-231)||(31745389-31745616)
chr1 (11-157)||(40377012-40377158)
chr1 (10-157)||(7549813-7549960)
chr1 (19-132)||(36393479-36393592)
chr1 (11-132)||(50974564-50974685)
chr1 (25-157)||(45584509-45584641)
chr1 (11-157)||(31652593-31652738)
chr1 (10-157)||(44719151-44719298)
chr1 (40-132)||(4039621-4039713)
chr1 (11-132)||(5851530-5851649)
chr1 (27-133)||(25302066-25302172)
chr1 (56-157)||(25095579-25095680)
chr1 (19-154)||(34596118-34596250)
chr1 (46-134)||(45753443-45753531)
chr1 (11-105)||(12148289-12148383)
chr1 (48-157)||(34445639-34445748)
chr1 (19-127)||(12636305-12636414)
chr1 (19-132)||(40203076-40203189)
chr1 (49-132)||(5115634-5115717)
chr1 (48-154)||(28672315-28672420)
chr1 (13-134)||(5787434-5787554)
chr1 (18-100)||(42850094-42850176)
chr1 (25-102)||(50222611-50222688)
chr1 (45-132)||(33744159-33744246)
chr1 (11-106)||(48947225-48947320)
chr1 (16-157)||(13954126-13954271)
chr1 (45-127)||(39241430-39241512)
chr1 (45-101)||(48253319-48253375)
chr1 (28-107)||(44442270-44442349)
chr1 (46-131)||(3338051-3338137)
chr1 (79-133)||(5597710-5597764)
chr1 (95-157)||(27396102-27396164)
chr1 (12-110)||(50328308-50328405)
chr1 (45-138)||(14774091-14774184)
chr1 (56-129)||(28171517-28171590)
chr1 (48-92)||(15549642-15549686)
[»] chr4 (39 HSPs)
chr4 (11-157)||(49446583-49446730)
chr4 (18-157)||(44646522-44646661)
chr4 (19-132)||(44647879-44647992)
chr4 (12-156)||(42197007-42197150)
chr4 (36-157)||(6316821-6316942)
chr4 (26-138)||(9802621-9802732)
chr4 (14-129)||(20390023-20390138)
chr4 (25-140)||(42844030-42844145)
chr4 (11-131)||(41468080-41468200)
chr4 (35-129)||(33982423-33982517)
chr4 (17-107)||(44088286-44088376)
chr4 (45-153)||(25196110-25196218)
chr4 (22-115)||(50115059-50115149)
chr4 (56-157)||(40480205-40480306)
chr4 (45-132)||(12103864-12103951)
chr4 (19-132)||(24395194-24395308)
chr4 (26-116)||(49144774-49144864)
chr4 (11-92)||(38494748-38494829)
chr4 (78-157)||(28165362-28165442)
chr4 (46-128)||(39727579-39727660)
chr4 (45-157)||(50086432-50086543)
chr4 (56-129)||(34235910-34235984)
chr4 (26-92)||(36721591-36721657)
chr4 (14-123)||(49769110-49769219)
chr4 (56-115)||(31871090-31871149)
chr4 (27-157)||(52373050-52373181)
chr4 (10-92)||(41370157-41370239)
chr4 (27-116)||(1696194-1696283)
chr4 (59-132)||(53919863-53919936)
chr4 (40-132)||(27346293-27346385)
chr4 (59-134)||(5387947-5388022)
chr4 (29-131)||(51105918-51106020)
chr4 (78-127)||(27706954-27707003)
chr4 (26-134)||(27981368-27981477)
chr4 (96-157)||(44088211-44088272)
chr4 (28-157)||(52650697-52650826)
chr4 (45-133)||(11875452-11875539)
chr4 (58-157)||(23230272-23230372)
chr4 (45-157)||(47560596-47560707)
[»] chr3 (28 HSPs)
chr3 (11-157)||(34758899-34759045)
chr3 (11-156)||(54911988-54912133)
chr3 (11-132)||(18399149-18399271)
chr3 (19-156)||(30687077-30687214)
chr3 (18-157)||(27968170-27968307)
chr3 (18-157)||(52340118-52340257)
chr3 (27-145)||(38388694-38388812)
chr3 (46-157)||(28434481-28434591)
chr3 (56-157)||(779710-779810)
chr3 (40-157)||(38704969-38705086)
chr3 (23-121)||(7754772-7754871)
chr3 (19-132)||(4033026-4033138)
chr3 (19-110)||(19898100-19898191)
chr3 (45-112)||(55110042-55110109)
chr3 (19-156)||(25548196-25548333)
chr3 (54-128)||(43749507-43749581)
chr3 (46-116)||(53433211-53433281)
chr3 (74-129)||(1680511-1680566)
chr3 (45-136)||(2831538-2831629)
chr3 (48-132)||(39976721-39976804)
chr3 (37-112)||(54955783-54955859)
chr3 (79-133)||(11404700-11404754)
chr3 (56-106)||(40546348-40546398)
chr3 (120-157)||(29497248-29497285)
chr3 (112-157)||(29611990-29612035)
chr3 (45-101)||(21490626-21490682)
chr3 (56-120)||(30463992-30464056)
chr3 (74-114)||(37775371-37775411)
[»] chr5 (25 HSPs)
chr5 (14-157)||(8247037-8247180)
chr5 (12-157)||(3263717-3263862)
chr5 (11-154)||(19692696-19692840)
chr5 (18-129)||(5356295-5356406)
chr5 (11-131)||(35395184-35395304)
chr5 (12-157)||(10051700-10051845)
chr5 (16-157)||(28793305-28793446)
chr5 (18-155)||(1354345-1354481)
chr5 (11-129)||(22473432-22473551)
chr5 (36-132)||(21582367-21582463)
chr5 (48-150)||(14042440-14042542)
chr5 (34-131)||(31889611-31889709)
chr5 (74-157)||(4725897-4725979)
chr5 (16-102)||(142350-142436)
chr5 (80-134)||(22871913-22871967)
chr5 (48-133)||(3758194-3758279)
chr5 (48-120)||(26663642-26663714)
chr5 (48-120)||(26935237-26935309)
chr5 (19-154)||(14474998-14475133)
chr5 (79-157)||(27650866-27650944)
chr5 (78-131)||(37976444-37976497)
chr5 (79-133)||(12933327-12933381)
chr5 (74-120)||(24241210-24241256)
chr5 (48-105)||(24241039-24241096)
chr5 (10-70)||(43145883-43145943)
[»] chr2 (26 HSPs)
chr2 (10-157)||(8789826-8789973)
chr2 (12-157)||(44941072-44941216)
chr2 (14-157)||(20682990-20683133)
chr2 (18-132)||(8773670-8773784)
chr2 (36-134)||(4238341-4238438)
chr2 (11-134)||(18053008-18053130)
chr2 (19-132)||(42945012-42945125)
chr2 (46-157)||(6761751-6761862)
chr2 (19-129)||(2393038-2393148)
chr2 (18-132)||(34546265-34546379)
chr2 (19-145)||(42966938-42967066)
chr2 (47-119)||(1070568-1070639)
chr2 (12-157)||(5961954-5962101)
chr2 (43-157)||(3882586-3882700)
chr2 (62-154)||(433551-433643)
chr2 (81-133)||(8898861-8898913)
chr2 (45-157)||(18227092-18227204)
chr2 (48-131)||(2825983-2826066)
chr2 (78-145)||(13442636-13442703)
chr2 (45-129)||(35228732-35228816)
chr2 (74-132)||(3199541-3199599)
chr2 (27-134)||(7271769-7271880)
chr2 (19-156)||(14102297-14102435)
chr2 (48-133)||(31448315-31448400)
chr2 (74-127)||(45212057-45212110)
chr2 (45-133)||(33275918-33276005)
[»] chr7 (30 HSPs)
chr7 (11-131)||(30412910-30413030)
chr7 (11-157)||(8170001-8170147)
chr7 (11-121)||(48137789-48137899)
chr7 (38-132)||(42493703-42493798)
chr7 (26-157)||(47507580-47507711)
chr7 (15-153)||(38452146-38452283)
chr7 (30-127)||(2964049-2964146)
chr7 (25-157)||(16878677-16878809)
chr7 (19-130)||(44391426-44391537)
chr7 (15-91)||(46684550-46684626)
chr7 (43-134)||(5248088-5248179)
chr7 (40-132)||(2741168-2741260)
chr7 (16-134)||(15034793-15034911)
chr7 (21-129)||(43670409-43670517)
chr7 (11-86)||(47305516-47305592)
chr7 (48-137)||(676400-676488)
chr7 (46-145)||(37352436-37352535)
chr7 (56-140)||(33887887-33887971)
chr7 (13-157)||(36015002-36015141)
chr7 (17-131)||(36285774-36285887)
chr7 (74-157)||(45375399-45375483)
chr7 (45-92)||(15995924-15995971)
chr7 (45-154)||(35754017-35754126)
chr7 (29-105)||(44495238-44495314)
chr7 (45-92)||(14574768-14574815)
chr7 (56-163)||(35599837-35599944)
chr7 (45-134)||(31477085-31477175)
chr7 (45-158)||(10031945-10032058)
chr7 (82-135)||(25120218-25120271)
chr7 (19-86)||(27359398-27359466)
[»] chr8 (18 HSPs)
chr8 (11-157)||(31206280-31206426)
chr8 (19-127)||(38956884-38956992)
chr8 (10-134)||(5217747-5217869)
chr8 (27-132)||(45368729-45368834)
chr8 (18-131)||(5020051-5020162)
chr8 (19-130)||(20169716-20169827)
chr8 (16-157)||(9632898-9633040)
chr8 (78-160)||(33636685-33636767)
chr8 (28-154)||(39691121-39691247)
chr8 (19-132)||(7044329-7044442)
chr8 (57-157)||(24103087-24103187)
chr8 (65-157)||(39932721-39932813)
chr8 (19-157)||(10335020-10335159)
chr8 (94-132)||(36819755-36819793)
chr8 (82-157)||(37564393-37564468)
chr8 (94-156)||(2124141-2124203)
chr8 (97-157)||(5968377-5968437)
chr8 (45-157)||(22209376-22209488)
[»] chr6 (12 HSPs)
chr6 (11-132)||(12383008-12383129)
chr6 (19-132)||(16442075-16442188)
chr6 (34-129)||(8176324-8176419)
chr6 (48-131)||(12307821-12307904)
chr6 (28-157)||(31702747-31702874)
chr6 (46-154)||(7465451-7465558)
chr6 (13-88)||(22695473-22695549)
chr6 (85-156)||(22696000-22696071)
chr6 (30-128)||(35241410-35241509)
chr6 (19-132)||(6048268-6048381)
chr6 (48-129)||(26311807-26311889)
chr6 (56-157)||(30509286-30509387)
[»] scaffold0246 (1 HSPs)
scaffold0246 (56-157)||(18144-18245)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 31745389 - 31745616
Alignment:
Q  3 aggcactaggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaat 102  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31745389 aggcactaggcactagttaaggcctttaaatagtaacttatcataaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaat 31745488  T
Q  103 aatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagacaattaacnnnnnnnattaactcaacactgttcttgtcataattaa 202  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  31745489 aatttattcttttagaatctttaaagagtgcctcggaggcactagttaacaagacaattaac-ttttttattaactcaacactgttcttgtcataattaa 31745587  T
Q  203 atatttttgttatgacatgttttattgat 231  Q
    |||||| ||||||||||||||||||||||    
T  31745588 atatttatgttatgacatgttttattgat 31745616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 40377158 - 40377012
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    ||||||||||||||||||||||| |||| ||||||||||||  ||||||||||||| || | ||||| |||||||||||||| ||||||||| |||| ||    
T  40377158 ggcactagttaaggcctttaaatggtaatttatcatgaaaagttgtgtaatcaatgaattgggaatcaaaatatttgacttttttataaaattatttctt 40377059  T
Q  111 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||| ||||| |||||||||| |   | |||||| |||||||||||    
T  40377058 cttttggaatccttaaagagtgcccaaggggcactcgttaacaagac 40377012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 7549960 - 7549813
Alignment:
Q  10 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 109  Q
    ||||||||| |||||||||||||| |||||||||||||||||  ||||| |||||||||||   ||||||||||||||||||| ||||||||| |||| |    
T  7549960 aggcactagctaaggcctttaaattgtaacttatcatgaaaagttgtgtgatcaatgcatcagaaatcgaaatatttgacttttttataaaattatttct 7549861  T
Q  110 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||||  |||  |||||||||||| ||  | |||| |||||||||||    
T  7549860 tcttttgaaattcttaaagagtgtcccgaggacactcgttaacaagac 7549813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 36393592 - 36393479
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 118  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||||| ||| |||||| ||||||| |||||||  |    
T  36393592 ttaagacctttaaatggtaacttatcatgaaaatacgtgtaatcaatgcatcgaaaatcaaaatatttgatttttttataacataattttttcttttgaa 36393493  T
Q  119 atctttaaagagtg 132  Q
    ||| ||||||||||    
T  36393492 atccttaaagagtg 36393479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 50974564 - 50974685
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    |||||| |||||| ||||||||| |||| ||||||||||||||| |||||| |||||||||| ||| ||||||||||||||| |||||||||||||| ||    
T  50974564 ggcactcgttaagacctttaaatggtaatttatcatgaaaatatatgtaattaatgcatcgaaaattgaaatatttgacttttttataaaataatttttt 50974663  T
Q  111 cttttagaatctttaaagagtg 132  Q
    |||||  |||| || |||||||    
T  50974664 cttttgaaatccttcaagagtg 50974685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 45584641 - 45584509
Alignment:
Q  25 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 124  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||   |||  |||||||| ||||| |||||||||||||| ||||||| ||||| ||    
T  45584641 cctttaaaaagtaacttatcatgaaaatatgtgtaatcaatacatcagaaattaaaatatttaacttttttataaaataatttcttcttttggaatcctt 45584542  T
Q  125 aaagagtgtctcggaggcactggttaacaagac 157  Q
    |||||||| | ||| |||| | |||||||||||    
T  45584541 aaagagtgccccgggggcattcgttaacaagac 45584509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 31652738 - 31652593
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||  |||  |||||||||||||| |||||||||||||| ||    
T  31652738 ggcactagttaagggctttaaatggtaacctatcatgaaaatatgtgtaatcattgcatcggaaattaaaatatttgacttttttataaaataatttctt 31652639  T
Q  111 cttttagaatctttaaagagtgtct-cggaggcactggttaacaagac 157  Q
     ||||  |||| ||||||||| ||| ||||| |||| |||||||||||    
T  31652638 -ttttgaaatccttaaagagt-tctccggagacactcgttaacaagac 31652593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 44719298 - 44719151
Alignment:
Q  10 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 109  Q
    ||||||||||||||  |||||||| |||| ||||||||||||| |||||||||| ||||||   ||||| ||||||| ||||| |||||||||||| |||    
T  44719298 aggcactagttaagagctttaaatggtaatttatcatgaaaatgtgtgtaatcattgcatcagaaatcggaatatttaacttttttataaaataatatat 44719199  T
Q  110 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    | |||| ||||| ||||| |||||| ||| | |||| |||||||||||    
T  44719198 ttttttggaatccttaaaaagtgtcccggggacactcgttaacaagac 44719151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 4039621 - 4039713
Alignment:
Q  40 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 132  Q
    ||||||| ||||||| |||||||||||||| |  ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  4039621 ttatcataaaaatatatgtaatcaatgcattggaaatcgaaatatttgacttttttataaaataatttattcttttggaatccttaaagagtg 4039713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 5851649 - 5851530
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    |||||||| ||| |||||||||| |||||||||||||||  ||| ||||||||||||||||| ||||||||| ||||| ||| ||||||||| |||| ||    
T  5851649 ggcactagataaagcctttaaatggtaacttatcatgaa--tatttgtaatcaatgcatcgaaaatcgaaatctttgatttttttataaaattatttctt 5851552  T
Q  111 cttttagaatctttaaagagtg 132  Q
    |||||  |||| ||||||||||    
T  5851551 cttttgaaatccttaaagagtg 5851530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 25302172 - 25302066
Alignment:
Q  27 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 126  Q
    ||||||| |||||||||||||||||||||||||||||||| || || ||||||||| ||||||||| ||||| ||| |||| || |||| ||||| ||||    
T  25302172 tttaaatggtaacttatcatgaaaatatgtgtaatcaatgtattgaaaatcgaaatctttgacttttttatacaattattttttgttttggaatccttaa 25302073  T
Q  127 agagtgt 133  Q
    |||||||    
T  25302072 agagtgt 25302066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 25095680 - 25095579
Alignment:
Q  56 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 155  Q
    ||||||||||||||||| ||| ||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||  |||| |||| | |||||||    
T  25095680 tgtaatcaatgcatcgaaaattgaaatatttgacttttttatgaaataatttcttcttttagaatccttaaagagtgtcatggagacactcgctaacaag 25095581  T
Q  156 ac 157  Q
    ||    
T  25095580 ac 25095579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 34596118 - 34596250
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 118  Q
    ||||| |||||||||  |||||| | |||||| |||||||||||||||||| || ||||||||||||||| ||  |||||||||||||| ||||||||||    
T  34596118 ttaagacctttaaatgataactttttatgaaattatgtgtaatcaatgcattgaaaatcgaaatatttgaatt--ttataaaataatttcttcttttaga 34596215  T
Q  119 atctttaaagagtgtctcggaggcactggttaacaa 154  Q
    ||| |||| || |||| |||||||||  ||||||||    
T  34596216 atccttaatgaatgtc-cggaggcacccgttaacaa 34596250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 45753531 - 45753443
Alignment:
Q  46 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 134  Q
    ||||||| |||||||||||||||| || ||| |||||||||||| || || | ||||||||| ||||||||||||||||||||||||||    
T  45753531 tgaaaatttgtgtaatcaatgcattgaaaattgaaatatttgacatttttctgaaataatttcttcttttagaatctttaaagagtgtc 45753443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 12148289 - 12148383
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 105  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||| |  |||| |||||||| ||||| | ||||||||||    
T  12148289 ggcactagttaaagtctttaaatggtaacttatcatgaaaatatgtgtaaccaatgcattggaaatcaaaatattttactttttcataaaataat 12148383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 34445748 - 34445639
Alignment:
Q  48 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 147  Q
    |||| |||| |||||||||||| |  ||||||||||||||||||| ||||||| |||||| ||||||| ||||| ||||||||||   ||| |||||| |    
T  34445748 aaaacatgtctaatcaatgcattggaaatcgaaatatttgacttttttataaattaatttcttcttttggaatccttaaagagtgctccgggggcactcg 34445649  T
Q  148 ttaacaagac 157  Q
    ||||||||||    
T  34445648 ttaacaagac 34445639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 12636305 - 12636414
Alignment:
Q  19 ttaaggcctttaaatagtaacttatc-atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 117  Q
    ||||| |||||||||||||| || |  |||||||||||||||||||||| || |  |||||||||| |||||||| | ||||||| |||||||||||| |    
T  12636305 ttaagacctttaaatagtaatttttttatgaaaatatgtgtaatcaatgtataggaaatcgaaatacttgactttttaataaaattatttattcttttgg 12636404  T
Q  118 aatctttaaa 127  Q
    |||| |||||    
T  12636405 aatccttaaa 12636414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 40203076 - 40203189
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 118  Q
    |||||| |||||||| |||||||    |||||||||||||||||||||||| |  ||| ||||||||||||||| |||| ||||||||| || ||||  |    
T  40203076 ttaaggtctttaaatggtaactttgtctgaaaatatgtgtaatcaatgcattggaaattgaaatatttgacttttttatgaaataatttcttgttttgta 40203175  T
Q  119 atctttaaagagtg 132  Q
    ||| ||||||||||    
T  40203176 atccttaaagagtg 40203189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 5115634 - 5115717
Alignment:
Q  49 aaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 132  Q
    |||| |||||||| ||||||| |  ||| ||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||    
T  5115634 aaatttgtgtaattaatgcattggaaattgaaatatttaacttttttataacataatttattcttttagaatccttaaagagtg 5115717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 28672315 - 28672420
Alignment:
Q  48 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 147  Q
    ||||||||||||||||||||||  | |||| |||||||||||||| ||| |||||||||  || |||||||||  || |||||||||||||| |||||      
T  28672315 aaaatatgtgtaatcaatgcatttaaaatcaaaatatttgacttttttaaaaaataattgtttattttagaatgctt-aagagtgtctcggatgcactca 28672413  T
Q  148 ttaacaa 154  Q
    |||||||    
T  28672414 ttaacaa 28672420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 5787434 - 5787554
Alignment:
Q  13 cactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 112  Q
    |||||||||| | |||||||   ||||||||||  |||||||||||||| ||||||| |  ||| ||||||||| ||| | |||||||||| ||| ||||    
T  5787434 cactagttaaagtctttaaaatataacttatcaaaaaaatatgtgtaattaatgcattggaaattgaaatatttaactattttataaaatattttcttct 5787533  T
Q  113 tttagaatctttaaagagtgtc 134  Q
    ||| ||||| ||||||||||||    
T  5787534 ttt-gaatccttaaagagtgtc 5787554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 42850094 - 42850176
Alignment:
Q  18 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaa 100  Q
    |||||| |||||||||  ||| ||||||| ||||||| | |||| |||||||||| ||||||||||||| ||||| |||||||    
T  42850094 gttaagacctttaaatgataatttatcataaaaatatatataattaatgcatcgaaaatcgaaatatttaacttttttataaa 42850176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 50222611 - 50222688
Alignment:
Q  25 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaat 102  Q
    |||||||||||||| || | ||||||||| ||||||||||||||| || |||  |||||||||| ||| |||||||||    
T  50222611 cctttaaatagtaattttttatgaaaataagtgtaatcaatgcattgaaaattaaaatatttgatttttttataaaat 50222688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 33744159 - 33744246
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 132  Q
    ||||||| || |||||||||||||| || ||||||||||||||||||| | | |||||||||  || ||||| |||  ||||||||||    
T  33744159 atgaaaaaatatgtaatcaatgcattgaaaatcgaaatatttgactttttaaaaaaataattacttattttaaaatgcttaaagagtg 33744246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 48947320 - 48947225
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatt 106  Q
    |||||||||||||| |||||||| ||||||| | |||||||| |||||||||| ||||| |  ||| ||||  |||||| || ||| |||||||||    
T  48947320 ggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattgaaaactttgacatttttaaaaaataatt 48947225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 13954126 - 13954271
Alignment:
Q  16 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 115  Q
    ||||||||||||||||||   || ||||  ||||||| | |||||||| ||||| |  |||| |||| ||||| ||| ||||||| |||||| ||||| |    
T  13954126 tagttaaggcctttaaatgaaaatttattgtgaaaatgtatgtaatca-tgcattggaaatcaaaatttttgatttttttataaagtaatttcttcttct 13954224  T
Q  116 agaatctttaaagagtgt-----ctcggaggcactggttaacaagac 157  Q
    |||||| |||||||||||     |||||||||||  |||||||||||    
T  13954225 agaatccttaaagagtgttccacctcggaggcacccgttaacaagac 13954271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 39241430 - 39241512
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 127  Q
    ||||||| |||||||||||||||||||| |||  ||||||||   ||| ||||||||||| ||||| ||||| |||| |||||    
T  39241430 atgaaaacatgtgtaatcaatgcatcgaaaattaaaatatttattttttttataaaataaattatttttttaaaatccttaaa 39241512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 48253375 - 48253319
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaa 101  Q
    |||||||||||| ||||||||| || || |||||||||| |||||||| ||||||||    
T  48253375 atgaaaatatgtataatcaatgtattgaaaatcgaaatagttgacttttttataaaa 48253319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 44442349 - 44442270
Alignment:
Q  28 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt 107  Q
    |||||||||||||| | || |||||||||||| | |||| || || ||| ||||||||||||||| ||| | ||||||||    
T  44442349 ttaaatagtaactttttataaaaatatgtgtatttaatgtattgaaaattgaaatatttgacttttttaaagaataattt 44442270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 3338051 - 3338137
Alignment:
Q  46 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagt 131  Q
    ||||||| | |||||||||||||| || ||| |||||| || | ||| || || ||||||||| |||||||||||| ||||||||||    
T  3338051 tgaaaatttatgtaatcaatgcattgaaaattgaaatacttaattttttttatgaaataatttcttcttttagaatgtttaaagagt 3338137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 5597764 - 5597710
Alignment:
Q  79 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 133  Q
    |||||||| ||||| ||||| |||||||| |||||||| ||| ||||||||||||    
T  5597764 aaatatttaacttttttatagaataatttcttcttttaaaatatttaaagagtgt 5597710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 27396164 - 27396102
Alignment:
Q  95 tataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||||||||||| || |||||||||  ||||||| |||||||| || ||| |||||||||||    
T  27396164 tataaaataatttcttattttagaattcttaaagaatgtctcggtggtacttgttaacaagac 27396102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 50328308 - 50328405
Alignment:
Q  12 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    |||||| ||||| | |||||||  ||||||||||| ||||||||| |||| || | ||| | |||| |||||||| | ||| |||||||||||||||||    
T  50328308 gcactaattaagacttttaaatgataacttatcataaaaatatgtataattaaagtatcaaaaatcaaaatattt-aattttttataaaataatttatt 50328405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 14774184 - 14774091
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcgg 138  Q
    |||||||| ||| || ||||||||| || ||||||||||||||| ||| | |  |||||||| ||| |||||||||  ||||||| | ||||||    
T  14774184 atgaaaatgtgtatattcaatgcattgaaaatcgaaatatttgattttttaaacaaataattgattattttagaatgcttaaagaatatctcgg 14774091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 28171517 - 28171590
Alignment:
Q  56 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 129  Q
    |||||| |||||||  | ||| ||||||||| ||||| |||||||||||||| ||||||| ||||  |||||||    
T  28171517 tgtaatgaatgcattaaaaattgaaatatttaacttttttataaaataattttttctttttgaatgcttaaaga 28171590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 15549686 - 15549642
Alignment:
Q  48 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 92  Q
    ||||| |||||||||||||||| || ||||||||||||| |||||    
T  15549686 aaaatgtgtgtaatcaatgcattgaaaatcgaaatattttacttt 15549642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 49446583 - 49446730
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||| || |    
T  49446583 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttttttataaaataacttct 49446682  T
Q  110 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    |||||| ||||| |||||||||| | ||  |||||| |||||||||||    
T  49446683 tcttttggaatccttaaagagtgccccgagggcacttgttaacaagac 49446730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 44646522 - 44646661
Alignment:
Q  18 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 117  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| |||||||      
T  44646522 gttaaggcttttgaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttattataaaatagtttcttcttttga 44646621  T
Q  118 aatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    |||| ||||||| || | ||| |||||| |||||||||||    
T  44646622 aatccttaaagaatgccccgggggcactcgttaacaagac 44646661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 44647879 - 44647992
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||| |||||||||||||| ||| ||||||| ||    
T  44647879 ttaaggcctttgaatagtaacttatcatgaaaatatgtgtaattaatgcatcggaaattgaaatatttgattttattataaaatagtttcttcttttgga 44647978  T
Q  119 atctttaaagagtg 132  Q
    ||||||||||||||    
T  44647979 atctttaaagagtg 44647992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 42197150 - 42197007
Alignment:
Q  12 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 111  Q
    ||||||||||| | |||||||| |||| ||||||| ||||||||||||||||||| ||||| |||| |||||||||| ||| | |||||||||||| |||    
T  42197150 gcactagttaaagtctttaaatggtaatttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatatttgattttttaataaaataatttcttc 42197051  T
Q  112 ttttagaatctttaaagagtgtctcggaggcactggttaacaaga 156  Q
    ||||||||| ||||||||||||  || ||||||| ||||||||||    
T  42197050 ttttagaat-tttaaagagtgttccgaaggcactcgttaacaaga 42197007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 157
Target Start/End: Original strand, 6316821 - 6316942
Alignment:
Q  36 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtct 135  Q
    |||||||||||||||||||||||||||||||||| || |||| |||| |||| |||| ||||||||| |||| |||||||  ||||||||||||||| |     
T  6316821 taacttatcatgaaaatatgtgtaatcaatgcattgaaaatcaaaatctttgccttttttataaaattatttcttcttttgaaatctttaaagagtgccc 6316920  T
Q  136 cggaggcactggttaacaagac 157  Q
    |||||||||| |||||||||||    
T  6316921 cggaggcactcgttaacaagac 6316942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 9802621 - 9802732
Alignment:
Q  26 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 125  Q
    ||||||| | ||||||||||| ||||||||||||||||||| ||||  |||| |||||||||||||| |||||||||||||| |||||||||||| ||||    
T  9802621 ctttaaagaataacttatcataaaaatatgtgtaatcaatgtatcggaaatcaaaatatttgacttttttataaaataattttttcttttagaat-ttta 9802719  T
Q  126 aagagtgtctcgg 138  Q
    |||||||||||||    
T  9802720 aagagtgtctcgg 9802732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 20390138 - 20390023
Alignment:
Q  14 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 113  Q
    |||||||||||| ||||||| |||||||||||||||||  ||||| ||||||||||||| |||| |||||||||||||| ||||||||| |||| || ||    
T  20390138 actagttaaggcttttaaatggtaacttatcatgaaaagttgtgtgatcaatgcatcgaaaatcaaaatatttgacttttttataaaattatttcttgtt 20390039  T
Q  114 ttagaatctttaaaga 129  Q
    || ||||  |||||||    
T  20390038 ttggaattcttaaaga 20390023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 42844145 - 42844030
Alignment:
Q  25 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 124  Q
    ||||||||  |||| |||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||  | ||||  |||||||    
T  42844145 cctttaaagggtaatttattatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttcgttttttgaaatcttt 42844046  T
Q  125 aaagagtgtctcggag 140  Q
     ||||||||| |||||    
T  42844045 caagagtgtcccggag 42844030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 41468200 - 41468080
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||  |||||||||||||||   ||||| ||||||| ||||| |||||| ||||||| ||    
T  41468200 ggcactagttaaggcctttaaatggtaacttttcataaaaatacatgtaatcaatgcatcagaaatcggaatatttaacttttttataacataatttctt 41468101  T
Q  111 cttttagaatctttaaagagt 131  Q
    ||||| ||||  |||||||||    
T  41468100 cttttggaattcttaaagagt 41468080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 33982517 - 33982423
Alignment:
Q  35 gtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 129  Q
    |||||||||||||||||||| ||||||||||| ||||  ||||||||||||| ||||| |||||||||||||| |||||||  |||| |||||||    
T  33982517 gtaacttatcatgaaaatatatgtaatcaatgtatcggaaatcgaaatatttaacttttttataaaataattttttcttttgaaatccttaaaga 33982423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 44088376 - 44088286
Alignment:
Q  17 agttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt 107  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||| | | |||| |||||||||| ||| | ||||||||||||    
T  44088376 agttaaggactttaaatagtaacttatcatgaagatatgtgtaatcaatgcaccaaaaatcaaaatatttgattttttaataaaataattt 44088286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 25196218 - 25196110
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 144  Q
    ||||||| ||||||||| ||||  | |  |||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||| ||||||||||    
T  25196218 atgaaaacatgtgtaattaatgtcttggaaatcaaaatatttgacttttttataaattaattttttcttttagaatccttaaagagtgtttcggaggcac 25196119  T
Q  145 tggttaaca 153  Q
    | |||||||    
T  25196118 tcgttaaca 25196110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 50115149 - 50115059
Alignment:
Q  22 aggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 115  Q
    |||||||||||| ||||||||||||   |||||||||||||||||||| |  ||||||||| ||||||||| |||||||||||||| |||||||    
T  50115149 aggcctttaaatggtaacttatcat---aatatgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcttctttt 50115059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 40480205 - 40480306
Alignment:
Q  56 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 155  Q
    ||||||||||| |||| |||| ||||||||||||||| |||| | ||||||| ||||||||| ||| |||||||||||| | |||||||| ||| |||||    
T  40480205 tgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatccttaaagagtgtcccagaggcactcgtttacaag 40480304  T
Q  156 ac 157  Q
    ||    
T  40480305 ac 40480306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 12103864 - 12103951
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 132  Q
    ||||||||||||||||||||||  | |  ||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||| ||||    
T  12103864 atgaaaatatgtgtaatcaatgttttggaaatcgaattatttgacttttttatgaaataatttattcttttagaatccttaaaaagtg 12103951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 24395194 - 24395308
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatg-catcgagaatcgaaatatttgac-tttattataaaataatttattctttta 116  Q
    ||||| |||||| ||||||||||   |||||||||||||||||||||| | | || |||||||||||||||| ||| ||||||| |||||| ||||||||    
T  24395194 ttaagacctttatatagtaactttgtatgaaaatatgtgtaatcaatgtcttaga-aatcgaaatatttgaccttttttataaattaatttcttctttta 24395292  T
Q  117 gaatctttaaagagtg 132  Q
    ||||| ||||||||||    
T  24395293 gaatccttaaagagtg 24395308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 49144864 - 49144774
Alignment:
Q  26 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 116  Q
    |||||||| |||| || |||| ||||||| ||||||||||||||||| |||| |||| ||| ||||| |||||||||||||| ||||||||    
T  49144864 ctttaaatggtaatttttcataaaaatatatgtaatcaatgcatcgaaaatcaaaatttttaacttttttataaaataatttcttctttta 49144774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 38494748 - 38494829
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 92  Q
    |||||||||||||| ||||| ||  ||| ||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||    
T  38494748 ggcactagttaaggtctttatatgataatttatcataaaaatatgtgtaatcaatgcatcgaaaatcgaaagatttgccttt 38494829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 28165442 - 28165362
Alignment:
Q  78 gaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||||||||| ||| || |||||||||||| ||||||||||||||||||||||| |||| | |||||| |||||||||||    
T  28165442 gaaatatttgattttttttataaaataatttcttcttttagaatctttaaagagtatctcaggggcactcgttaacaagac 28165362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 39727579 - 39727660
Alignment:
Q  46 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 128  Q
    ||||||| | |||||||||||||||   ||| ||||||||||||||| ||||| |||||||||||||||||||||| ||||||    
T  39727579 tgaaaatttatgtaatcaatgcatcagaaattgaaatatttgacttt-ttatagaataatttattcttttagaatccttaaag 39727660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 50086432 - 50086543
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 144  Q
    ||||||||||||||| ||||||||| || |||| |||||||||| ||| ||| | |||||||  || |||| |||| |||||||||| || ||| |||||    
T  50086432 atgaaaatatgtgtattcaatgcattgaaaatcaaaatatttgatttttttaaagaataattgtttattttggaatgtttaaagagtttcccgg-ggcac 50086530  T
Q  145 tggttaacaagac 157  Q
    | |||||||||||    
T  50086531 tcgttaacaagac 50086543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 34235984 - 34235910
Alignment:
Q  56 tgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaaga 129  Q
    |||||||||||||| || ||| ||||| ||||||||| || ||||||||||||||||||||| ||| ||||||||    
T  34235984 tgtaatcaatgcattgaaaattgaaatttttgactttttttataaaataatttattcttttaaaatgtttaaaga 34235910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 36721591 - 36721657
Alignment:
Q  26 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 92  Q
    ||||||||||||| || | ||| |||| |||||||||||||||| |||||| |||||||||||||||    
T  36721591 ctttaaatagtaagtttttatggaaatttgtgtaatcaatgcattgagaattgaaatatttgacttt 36721657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 49769110 - 49769219
Alignment:
Q  14 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 113  Q
    |||| ||||| ||||||||| |||||||||||| |||||||||||||||||| | ||   |||  |||| ||  ||||| ||||||||| |||| |||||    
T  49769110 actacttaagacctttaaatggtaacttatcataaaaatatgtgtaatcaattcgtcataaattaaaattttcaacttttttataaaattatttcttctt 49769209  T
Q  114 ttagaatctt 123  Q
    ||| ||||||    
T  49769210 ttaaaatctt 49769219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 31871090 - 31871149
Alignment:
Q  56 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 115  Q
    ||||||||||||||||  ||| ||||||||| ||||| |||||||||||||| |||||||    
T  31871090 tgtaatcaatgcatcggaaattgaaatattttacttttttataaaataatttcttctttt 31871149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 52373050 - 52373181
Alignment:
Q  27 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatcttta 125  Q
    |||||||||||| || |  ||||||| ||||||||  |||||| || |||   ||||||||||||| || || ||||||||| || ||| | |||| |||    
T  52373050 tttaaatagtaattttttctgaaaatttgtgtaatttatgcattgaaaattataatatttgactttttttatgaaataatttcttatttcaaaatcctta 52373149  T
Q  126 aagagtgtctcggaggcactggttaacaagac 157  Q
    ||||||||| |||||| ||| |||||||||||    
T  52373150 aagagtgtcccggaggtactcgttaacaagac 52373181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 41370157 - 41370239
Alignment:
Q  10 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 92  Q
    |||||||  |||||| |||| |||||||| || | |||||||| |||||||||||||||| || ||| ||||||||| |||||    
T  41370157 aggcactttttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttt 41370239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 1696194 - 1696283
Alignment:
Q  27 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 116  Q
    ||||||||||||||| |  ||||||| | ||||||||||||||||  ||| |||||||||| |||| ||||  |||||| | ||||||||    
T  1696194 tttaaatagtaactttttttgaaaatgtatgtaatcaatgcatcggaaattgaaatatttgtcttttttatggaataatatcttctttta 1696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 53919936 - 53919863
Alignment:
Q  59 aatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 132  Q
    |||||||||||||  ||| ||||| ||||||||| ||||| ||||||||||||||||  |||  ||||||||||    
T  53919936 aatcaatgcatcggaaattgaaatttttgacttttttatagaataatttattcttttgaaatgcttaaagagtg 53919863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 27346385 - 27346293
Alignment:
Q  40 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 132  Q
    ||||||| ||||| ||| |||| |||||| |   |||| |||| ||||||||| ||||||||||| || || |||||||||| ||||||||||    
T  27346385 ttatcataaaaatgtgtataataaatgcaccagaaatcaaaatctttgacttttttataaaataaattctttttttagaatccttaaagagtg 27346293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 5387947 - 5388022
Alignment:
Q  59 aatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 134  Q
    ||||||||||| || ||||||||||||| | ||| |  ||||||||||| |||||||| |||||||| | ||||||    
T  5387947 aatcaatgcattgaaaatcgaaatatttaattttttattaaaataatttcttcttttaaaatctttataaagtgtc 5388022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 51106020 - 51105918
Alignment:
Q  29 taaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 128  Q
    ||||||||||||  | ||||||||||| ||||||  || || || |||  |||||||||||||| ||| | |||||||  || ||||||||| |||||||    
T  51106020 taaatagtaactatttatgaaaatatgcgtaatccgtgtattgaaaattaaaatatttgacttttttaaataataattgtttattttagaatatttaaag 51105921  T
Q  129 agt 131  Q
    |||    
T  51105920 agt 51105918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 27706954 - 27707003
Alignment:
Q  78 gaaatatttgactttattataaaataatttattcttttagaatctttaaa 127  Q
    ||||||||||||||| ||||||||| |||| || |||||||||| |||||    
T  27706954 gaaatatttgactttcttataaaatgatttcttattttagaatcattaaa 27707003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 27981477 - 27981368
Alignment:
Q  26 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt-agaatcttt 124  Q
    ||||||||||||||||   ||| ||||||||||||| |||| || || ||| ||||||||| | ||| | ||||| |||||| || |||| | ||| |||    
T  27981477 ctttaaatagtaactttgtatgtaaatatgtgtaattaatgtattgaaaattgaaatatttaattttttcataaattaatttttttttttaaaaattttt 27981378  T
Q  125 aaagagtgtc 134  Q
    ||||||||||    
T  27981377 aaagagtgtc 27981368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 44088272 - 44088211
Alignment:
Q  96 ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    |||||||||||| |||||||||||| |||||| | ||   |||||||||| |||||||||||    
T  44088272 ataaaataatttcttcttttagaatttttaaaaattgctccggaggcactcgttaacaagac 44088211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 52650697 - 52650826
Alignment:
Q  28 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 127  Q
    ||||||||||| || | |||||||  |||||||||| || || || ||| ||||  |||||| ||  || | |||||||| ||  ||||| || ||||||    
T  52650697 ttaaatagtaattttttatgaaaaattgtgtaatcagtgaattgaaaattgaaaattttgacatttgtaaagaataatttcttaatttagcatgtttaaa 52650796  T
Q  128 gagtgtctcggaggcactggttaacaagac 157  Q
    ||||||  |||||||||| |||||||||||    
T  52650797 gagtgttccggaggcactcgttaacaagac 52650826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 11875452 - 11875539
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 133  Q
    |||||||| ||| |||||||||||| || |||  |||||||| | |||  ||||||||||||| || ||||| || |||||||||||||    
T  11875452 atgaaaatgtgtataatcaatgcattgaaaatt-aaatatttaatttttgtataaaataatttctttttttaaaagctttaaagagtgt 11875539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 23230272 - 23230372
Alignment:
Q  58 taatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 156  Q
    |||||||||||| || ||| |||| |||| ||||| || ||  |||||||| | ||||| ||||  |||||||||||||||||| |||| ||||| ||||    
T  23230272 taatcaatgcattgaaaattgaaacatttaacttttttcatggaataatttctccttttggaatgcttaaagagtgtctcggagacactcgttaataaga 23230371  T
Q  157 c 157  Q
    |    
T  23230372 c 23230372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 47560707 - 47560596
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 144  Q
    ||||||||  |||||||||||| ||  | |||| ||| |||||| ||| ||| |||||||||  || |||| ||||  ||||||||||||||| || |||    
T  47560707 atgaaaatgcgtgtaatcaatgtattaaaaatcaaaacatttgattttttta-aaaataattgcttattttggaatgattaaagagtgtctcgaagacac 47560609  T
Q  145 tggttaacaagac 157  Q
    | |||||||||||    
T  47560608 tcgttaacaagac 47560596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 34759045 - 34758899
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||  || ||||||||||| ||||| |||||||||||||  ||    
T  34759045 ggcactagttaagggctttaaatagtaacttatcatggaaatatatgtaatcaatgcatcaggagtcgaaatatttcacttttttataaaataattactt 34758946  T
Q  111 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||| ||||| |||||||||| | |||||||||| |||||||||||    
T  34758945 ctttttgaatccttaaagagtgccccggaggcactcgttaacaagac 34758899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 54911988 - 54912133
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    ||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||   ||| ||||||||| ||||| |||||||||| ||||||    
T  54911988 ggcactagttaaggcctataaatgacaacttatcatgaaaatatgtgtaatcaatgcatccgaaattgaaatatttaactttgttataaaatagtttatt 54912087  T
Q  111 cttttagaatctttaaagagtgtctcggaggcactggttaacaaga 156  Q
    ||||| ||||  ||||||||||  |||| | |||| ||||||||||    
T  54912088 cttttggaattcttaaagagtgcttcggggacactcgttaacaaga 54912133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 18399149 - 18399271
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattat-aaaataatttat 109  Q
    |||| |||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||  ||||||||||||||||||| |||| ||||| |||| |    
T  18399149 ggcattagttaaggcttttaaatggtaacttatcatgaaaagttgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaaaattatttct 18399248  T
Q  110 tcttttagaatctttaaagagtg 132  Q
    |||||| ||||| ||||||||||    
T  18399249 tcttttggaatccttaaagagtg 18399271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 30687077 - 30687214
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 118  Q
    |||||| ||||||||  ||| ||||||||||||||||||||||||||||||| | |||| || | ||||| ||| |||||| ||||||| ||||||||||    
T  30687077 ttaaggtctttaaatgataatttatcatgaaaatatgtgtaatcaatgcatcaaaaatcaaactctttgatttttttataacataatttcttcttttaga 30687176  T
Q  119 atctttaaagagtgtctcggaggcactggttaacaaga 156  Q
    ||| ||||||||| |||| ||| |||| ||||||||||    
T  30687177 atccttaaagagtatctctgagacactcgttaacaaga 30687214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 27968307 - 27968170
Alignment:
Q  18 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatc-aatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |||| ||||||||| |||| |||| |||| |||||||     
T  27968307 gttaaggcctttaaatggtaacttatcatgaaaatatgtgtaatcaaatgcatcgaaaatcaaaatctttgacttttttat-aaattatttcttcttttg 27968209  T
Q  117 gaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||| ||||| |||||| ||| |||||| |||||||||||    
T  27968208 gaatccttaaaaagtgtc-cgg-ggcactcgttaacaagac 27968170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 52340118 - 52340257
Alignment:
Q  18 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttattctttta 116  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||  ||||||||| |||||  ||| ||||||||| |||| ||| |||     
T  52340118 gttaaggcctttaaatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgattttttttataaaattatttcttcctttg 52340217  T
Q  117 gaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||| |||||||||| |||||| | ||| |||||||||||    
T  52340218 gaatccttaaagagtgcctcgga-gaactcgttaacaagac 52340257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 38388812 - 38388694
Alignment:
Q  27 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 126  Q
    |||||||||||| || | || |||||||||||||||||||||  || |||| |||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  38388812 tttaaatagtaaatttttataaaaatatgtgtaatcaatgcaatgaaaatcaaaatatttgacttttttataaattaatttcttcttttagaatctttaa 38388713  T
Q  127 agagtgtctcggaggcact 145  Q
    | |||| | ||||||||||    
T  38388712 atagtgccccggaggcact 38388694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 28434591 - 28434481
Alignment:
Q  46 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 145  Q
    ||||||| | ||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||| ||| |||| |||||||||||| |||  |||||    
T  28434591 tgaaaatttatgtaatcaatgcatcgaaaatcaaaatatttgacttt-ttatgaaataatttattctcttaaaatccttaaagagtgtcccgggagcact 28434493  T
Q  146 ggttaacaagac 157  Q
     |||||||||||    
T  28434492 cgttaacaagac 28434481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 779710 - 779810
Alignment:
Q  56 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 155  Q
    |||||| ||||||| |  |||| |||||||| ||||| | ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||    
T  779710 tgtaatgaatgcattgcaaatcaaaatatttaactttttcataaaataatttattcttttagaatttttaaagagtgtct-ggaggcactcgttaacaag 779808  T
Q  156 ac 157  Q
    ||    
T  779809 ac 779810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 38704969 - 38705086
Alignment:
Q  40 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcgga 139  Q
    |||||||  |||||||||||||||||||||||  |||| ||||||||||| || |||||||||||||| ||||||| ||||  |||||||||   ||||     
T  38704969 ttatcatacaaatatgtgtaatcaatgcatcggaaatcaaaatatttgacatttttataaaataattttttctttttgaattcttaaagagtacttcggg 38705068  T
Q  140 ggcactggttaacaagac 157  Q
    |||||| |||||||||||    
T  38705069 ggcactcgttaacaagac 38705086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 7754772 - 7754871
Alignment:
Q  23 ggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttagaatc 121  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||  ||||| ||| ||||||||| | || ||||||| |||||    
T  7754772 ggcctttaaatagtaacttatcatgaaaatatgtctaatcaatgcatcggaaatcgaaatcgttgactttttttataaaattacttcttcttttggaatc 7754871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 4033138 - 4033026
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 118  Q
    ||||| |||||||||   || ||||||||||||| |||||||||| |||||||  ||||||||| ||||| ||| |||||||||||||| || |||||||    
T  4033138 ttaagtcctttaaatgtaaatttatcatgaaaatgtgtgtaatca-tgcatcggaaatcgaaatctttgatttttttataaaataatttctttttttaga 4033040  T
Q  119 atctttaaagagtg 132  Q
    ||| ||||| ||||    
T  4033039 atccttaaaaagtg 4033026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 19898100 - 19898191
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    ||||| |||||| || |||| || | ||||||||||||||||||||||||| || ||| ||||||||||| |||  ||||||||||||||||    
T  19898100 ttaagacctttacattgtaaatttttatgaaaatatgtgtaatcaatgcattgaaaattgaaatatttgatttttatataaaataatttatt 19898191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 55110109 - 55110042
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 112  Q
    |||||||||| |||||||||||||| || ||||||||||||||| ||| |||||||||||||| ||||    
T  55110109 atgaaaatatatgtaatcaatgcattgaaaatcgaaatatttgatttttttataaaataattttttct 55110042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 25548196 - 25548333
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttag 117  Q
    ||||| |||||||||  ||| || | |||||||||||||||||||||||||    ||| ||||||||| || ||| |||||||||| ||| |||||||||    
T  25548196 ttaagacctttaaatgataaatttttatgaaaatatgtgtaatcaatgcattagaaattgaaatatttaactttttttataaaatattttcttcttttag 25548295  T
Q  118 aatctttaaagagtgtctcggaggcactggttaacaaga 156  Q
    | || ||||||||||| |||| || ||| ||||||||||    
T  25548296 agtccttaaagagtgt-tcgggggtactcgttaacaaga 25548333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 43749507 - 43749581
Alignment:
Q  54 tgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaag 128  Q
    ||||||||||||  || || ||| ||||||||||||||| | ||| |||||||||||||||||||||| ||||||    
T  43749507 tgtgtaatcaatatatagaaaattgaaatatttgactttttaatagaataatttattcttttagaatccttaaag 43749581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 53433211 - 53433281
Alignment:
Q  46 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttta 116  Q
    ||||||| | ||||||||||||||||| |||  |||||||||||||| ||||| |||||||| ||||||||    
T  53433211 tgaaaatttatgtaatcaatgcatcgaaaattaaaatatttgacttttttatagaataatttcttctttta 53433281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 1680511 - 1680566
Alignment:
Q  74 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 129  Q
    |||| |||||||||||||| ||||||| |||||||||||||| ||||| |||||||    
T  1680511 aatcaaaatatttgacttttttataaattaatttattctttttgaatccttaaaga 1680566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 2831629 - 2831538
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctc 136  Q
    |||||||  ||| |||||| |||||  | ||| ||||||||||||||||||| |||||||||| ||  ||| ||||| ||||||||||||||    
T  2831629 atgaaaacttgtataatcattgcatttaaaattgaaatatttgactttattaaaaaataatttcttgatttggaatccttaaagagtgtctc 2831538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 39976804 - 39976721
Alignment:
Q  48 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 132  Q
    |||||| |||||||||||| || || ||| |||| |||||||||| ||| ||||||||| ||| ||||||||| || ||||||||    
T  39976804 aaaatacgtgtaatcaatgtattgaaaatagaaacatttgactttttta-aaaataattgattattttagaatgttcaaagagtg 39976721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 54955783 - 54955859
Alignment:
Q  37 aacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttat-tataaaataatttattct 112  Q
    ||||| |||||||||||| ||||||  ||||||| | |||| |||||||||| ||| | ||||||||||||||||||    
T  54955783 aacttttcatgaaaatatatgtaatttatgcatcaaaaatcaaaatatttgattttttctataaaataatttattct 54955859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 11404754 - 11404700
Alignment:
Q  79 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 133  Q
    |||||||| ||||| ||||||||||||||||| ||||  |||||| |||||||||    
T  11404754 aaatatttaacttttttataaaataatttatttttttttaatcttaaaagagtgt 11404700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 40546398 - 40546348
Alignment:
Q  56 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatt 106  Q
    |||||||||||||| |  ||||||||||||||||||| ||| |||||||||    
T  40546398 tgtaatcaatgcattggaaatcgaaatatttgacttttttaaaaaataatt 40546348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 29497248 - 29497285
Alignment:
Q  120 tctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  29497248 tctttaaagaatgtctcggaggcactcgttaacaagac 29497285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 29612035 - 29611990
Alignment:
Q  112 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||||||| ||||||||||||| ||| |||||| |||||||||||    
T  29612035 ttttagaatgtttaaagagtgtcccgggggcactcgttaacaagac 29611990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 21490626 - 21490682
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaa 101  Q
    |||||||||||||| ||||||| || || ||| ||||||||||||||| ||| ||||    
T  21490626 atgaaaatatgtgtcatcaatgaattgaaaattgaaatatttgacttttttacaaaa 21490682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 30463992 - 30464056
Alignment:
Q  56 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 120  Q
    ||||||||||||||  | ||| ||||| ||||||||| ||||| |||||||| ||||||| ||||    
T  30463992 tgtaatcaatgcattaaaaattgaaatgtttgacttttttatagaataatttcttcttttggaat 30464056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 37775371 - 37775411
Alignment:
Q  74 aatcgaaatatttgactttattataaaataatttattcttt 114  Q
    ||||||||||||| ||||| |||||||||||||| ||||||    
T  37775371 aatcgaaatatttaacttttttataaaataatttcttcttt 37775411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 8247180 - 8247037
Alignment:
Q  14 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 113  Q
    ||||||||||| |||||||| |||||||||||||||||  ||| ||||||||||||||  ||||||||||||||||||| ||||||||| |||| |||||    
T  8247180 actagttaaggtctttaaatggtaacttatcatgaaaagttgtataatcaatgcatcggaaatcgaaatatttgacttttttataaaattatttcttctt 8247081  T
Q  114 ttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    || ||||| |||||||||||| ||| |||||| |||||||||||    
T  8247080 ttggaatccttaaagagtgtcacgggggcactcgttaacaagac 8247037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 3263862 - 3263717
Alignment:
Q  12 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 111  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||| |||| |||    
T  3263862 gcactagttaaggtctttaaatggtaacttatcattaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgacttttttataaaatgatttcttc 3263763  T
Q  112 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||  |||  |||||||||| | |||| ||||| |||||||||||    
T  3263762 ttttgaaattcttaaagagtgccccggaagcactcgttaacaagac 3263717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 19692840 - 19692696
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttat 109  Q
    |||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||||| || |||||||||||||||| ||| ||||||| |||||| |    
T  19692840 ggcactggttaaggcctttaaattgtaacttatcatcaaattatgtgtaatcaatgcattgaaaatcgaaatatttgactttttttataaattaatttct 19692741  T
Q  110 tcttttagaatctttaaagagtgtctcggaggcactggttaacaa 154  Q
    ||||||  ||||||||||||||| | ||| | |||| ||||||||    
T  19692740 tcttttgaaatctttaaagagtgccccggggacactcgttaacaa 19692696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 5356295 - 5356406
Alignment:
Q  18 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 117  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||| || |||| |    
T  5356295 gttaaggtctttaaatggtaacttatcatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgacgtttttataaattaatttcttattttgg 5356394  T
Q  118 aatctttaaaga 129  Q
     ||| |||||||    
T  5356395 tatccttaaaga 5356406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 35395304 - 35395184
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    |||||| |||||  ||||| ||| | |||||||||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||| ||| ||    
T  35395304 ggcactcgttaacaccttttaatggcaacttatcatgaaaatatgtgtaatcaatgcatcgaaaattaaaatatttgacttttttataaaatagtttctt 35395205  T
Q  111 cttttagaatctttaaagagt 131  Q
    ||||| ||||| |||||||||    
T  35395204 cttttggaatccttaaagagt 35395184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 10051845 - 10051700
Alignment:
Q  12 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 111  Q
    |||||||||||| ||||||||| ||||||||| |||||||  ||| ||||||||||||||  |||  |||||||||||||| ||||||||| |||| |||    
T  10051845 gcactagttaagacctttaaatggtaacttattatgaaaagttgtataatcaatgcatcggaaatataaatatttgacttttttataaaattatttcttc 10051746  T
Q  112 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||| |||| |||||||||| ||  | | |||| |||||||||||    
T  10051745 ttttaaaatccttaaagagtgccttagggacactcgttaacaagac 10051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 28793446 - 28793305
Alignment:
Q  16 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctttt 115  Q
    |||||||||  ||||||| |||| ||||||| ||||||| |||||| |||||||||  ||||||||||||||||||| ||||||||| |||| |||||||    
T  28793446 tagttaaggtatttaaatggtaaattatcataaaaatatatgtaattaatgcatcggaaatcgaaatatttgacttttttataaaatcatttcttctttt 28793347  T
Q  116 agaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
     ||||| |||||||| |   |||| ||||| |||||||||||    
T  28793346 ggaatccttaaagagcgcaccggaagcactcgttaacaagac 28793305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 1354345 - 1354481
Alignment:
Q  18 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 117  Q
    |||||||||||||||  |||| ||||||||||||||| | ||||||||  ||    ||||||||||||| ||||| |||||||||||||| || ||||||    
T  1354345 gttaaggcctttaaaaggtaaattatcatgaaaatatatataatcaatatattagaaatcgaaatatttaacttttttataaaataatttctttttttag 1354444  T
Q  118 aatctttaaagagtgtctcggaggcactggttaacaag 155  Q
    ||| | | |||||||||||||||||||| |||||||||    
T  1354445 aat-tcttaagagtgtctcggaggcacttgttaacaag 1354481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 22473551 - 22473432
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttat 109  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||   |||  ||||||||||  ||| |||||||||||||| |    
T  22473551 ggcactagttaagggctttaaatggtaacttatcgtgaaaatatgtgtaatcaatgcatcagaaattaaaatatttgattttttttataaaataatttct 22473452  T
Q  110 tcttttagaatctttaaaga 129  Q
    ||||||  |||| |||||||    
T  22473451 tcttttgaaatccttaaaga 22473432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 21582463 - 21582367
Alignment:
Q  36 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 132  Q
    ||||||||||||||||| ||||| |||| || |||   ||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| ||||    
T  21582463 taacttatcatgaaaatgtgtgtgatcattgtatcagaaatcgaaatatttgactattttataaaataatttattcttttggaatccttaaaaagtg 21582367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 14042542 - 14042440
Alignment:
Q  48 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactgg 147  Q
    ||||| ||| |||||||||||| |  |||| |||||||||||||| ||| | ||||||||||| |||||||||||||||||||| || ||||| |||| |    
T  14042542 aaaatttgtataatcaatgcattggaaatcaaaatatttgacttttttaaataataatttattattttagaatctttaaagagtatcccggagacactcg 14042443  T
Q  148 tta 150  Q
    |||    
T  14042442 tta 14042440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 31889709 - 31889611
Alignment:
Q  34 agtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttagaatctttaaagagt 131  Q
    |||||||| | |||||||||||||||||||||||||    ||| ||||||||| || ||| ||||||| |||||| ||||||||||||| |||||||||    
T  31889709 agtaactttttatgaaaatatgtgtaatcaatgcattagaaattgaaatattttactttttttataaattaatttcttcttttagaatcgttaaagagt 31889611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 4725897 - 4725979
Alignment:
Q  74 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||||||| ||||||||| ||||||||||||||||||||||  |||| ||||| ||||| |||| | |||| |||||||||||    
T  4725897 aatcgaaatctttgacttt-ttataaaataatttattcttttgaaatccttaaacagtgtttcggggacactcgttaacaagac 4725979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 142350 - 142436
Alignment:
Q  16 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaat 102  Q
    |||||||| ||||||||  |||||||||||| ||| ||||||||||||||| |||   ||| ||||||||||| ||| |||||||||    
T  142350 tagttaagccctttaaaatgtaacttatcataaaattatgtgtaatcaatgtatcagaaattgaaatatttgatttttttataaaat 142436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 22871967 - 22871913
Alignment:
Q  80 aatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 134  Q
    ||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||    
T  22871967 aatatttgacttttttataaaatattttcttcttttagaatccttaaagagtgtc 22871913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 3758279 - 3758194
Alignment:
Q  48 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 133  Q
    |||| |||| || ||||||||| || ||||||||||||||||||| ||| | ||||||| ||| ||||| ||| ||||||||||||    
T  3758279 aaaaaatgtatattcaatgcattgaaaatcgaaatatttgacttttttaaagaataattgattattttaaaatgtttaaagagtgt 3758194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 26663714 - 26663642
Alignment:
Q  48 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 120  Q
    |||| ||||||||||||| ||| |  ||||||||||||||||||| ||| |||||||||| || |||||||||    
T  26663714 aaaaaatgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaat 26663642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 26935309 - 26935237
Alignment:
Q  48 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 120  Q
    |||| ||||||||||||| ||| |  ||||||||||||||||||| ||| |||||||||| || |||||||||    
T  26935309 aaaaaatgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaat 26935237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 14474998 - 14475133
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 118  Q
    ||||| |||| |||||||||||| |  ||||||| | ||||||||| |||||   ||| |||||||||||| || ||||| |||||||| |||||||| |    
T  14474998 ttaagaccttcaaatagtaactttttttgaaaatttatgtaatcaaagcatctgaaattgaaatatttgacatttttatagaataatttcttcttttaaa 14475097  T
Q  119 atctttaaagagtgtctcggaggcactggttaacaa 154  Q
    ||  || ||||| | | |||| ||||| ||||||||    
T  14475098 atgcttgaagagagccccggaagcacttgttaacaa 14475133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 27650866 - 27650944
Alignment:
Q  79 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    |||||||| ||||| ||||| |||||||| || |||| |||| ||||||||||||  |||||| ||| |||||||||||    
T  27650866 aaatatttaacttttttatataataatttctttttttggaatgtttaaagagtgttccggaggtactcgttaacaagac 27650944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 37976497 - 37976444
Alignment:
Q  78 gaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 131  Q
    ||||||||||| ||| |||| ||||||||| |||||||||||| ||||||||||    
T  37976497 gaaatatttgatttttttatgaaataatttcttcttttagaatgtttaaagagt 37976444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 12933381 - 12933327
Alignment:
Q  79 aaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 133  Q
    |||||||||||||| ||||||||||||||||| ||||  |||| || ||||||||    
T  12933381 aaatatttgactttcttataaaataatttattattttgaaatcgttgaagagtgt 12933327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 24241210 - 24241256
Alignment:
Q  74 aatcgaaatatttgactttattataaaataatttattcttttagaat 120  Q
    ||||||||||||||||||| |  ||||||||||| ||||||||||||    
T  24241210 aatcgaaatatttgactttttattaaaataattttttcttttagaat 24241256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 24241039 - 24241096
Alignment:
Q  48 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 105  Q
    ||||||||| ||||||||| ||  | ||| ||||||||||||||| ||||||||||||    
T  24241039 aaaatatgtataatcaatgtattaaaaattgaaatatttgacttttttataaaataat 24241096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 43145943 - 43145883
Alignment:
Q  10 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatc 70  Q
    |||||||| ||||| |||||||||||||| || |  ||||||| | |||||||||||||||    
T  43145943 aggcactatttaagacctttaaatagtaattttttttgaaaatttatgtaatcaatgcatc 43145883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 8789973 - 8789826
Alignment:
Q  10 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 109  Q
    ||||||| ||||||| |||||||  |||||||| |||||||||||||||||||||||||||   |||| |||||||| ||||| |||||||||||||| |    
T  8789973 aggcactggttaaggtctttaaagggtaacttaacatgaaaatatgtgtaatcaatgcatcagaaatcaaaatatttaacttttttataaaataatttct 8789874  T
Q  110 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||||||||||||||||||||||| || | | ||| |||||||||||    
T  8789873 tcttttagaatctttaaagagtgtcccgaaagtactcgttaacaagac 8789826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 44941072 - 44941216
Alignment:
Q  12 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattc 111  Q
    |||||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||  ||||||||| ||| ||||| |||||| ||| ||| |||    
T  44941072 gcactagttaaggcctttaaatggtaatttatcaggaaaatatatgtaatcaatgcatcggaaatcgaaatctttaacttttttataacatactttcttc 44941171  T
Q  112 ttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    |||||||||| |||||||||||||| | |||||| |||||||||||    
T  44941172 ttttagaatccttaaagagtgtctcag-ggcactcgttaacaagac 44941216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 20682990 - 20683133
Alignment:
Q  14 actagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattctt 113  Q
    ||||||||| |  |||| || |||||||||||| ||||||||||||||||||||||||  ||||||||||||||| ||| |||||||||  ||| |||||    
T  20682990 actagttaaagtttttatatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgatttttttataaaatcttttcttctt 20683089  T
Q  114 ttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    || ||||| |||||||||||| ||| |||||| |||||||||||    
T  20683090 ttggaatccttaaagagtgtcccgggggcactcgttaacaagac 20683133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 8773670 - 8773784
Alignment:
Q  18 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 117  Q
    ||||||| |||||||  |||||||| ||||||||||| |||||||||||||||   |||| |||||||||||||| |||||||||||||| |||||||||    
T  8773670 gttaaggtctttaaagggtaacttaacatgaaaatatatgtaatcaatgcatcagaaatcaaaatatttgacttttttataaaataatttcttcttttag 8773769  T
Q  118 aatctttaaagagtg 132  Q
    |||||||||||||||    
T  8773770 aatctttaaagagtg 8773784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 4238341 - 4238438
Alignment:
Q  36 taacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 134  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| ||||||| ||||| ||||||||||||    
T  4238341 taacttat-atgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttcttctttttgaatccttaaagagtgtc 4238438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 18053008 - 18053130
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    |||| |||||||||||||||||  |||| ||||||||||| ||||| ||||||||||||||  |||| |||||||||||||| |||||||||||||| ||    
T  18053008 ggcattagttaaggcctttaaag-gtaatttatcatgaaagtatgtataatcaatgcatcggaaatcaaaatatttgacttttttataaaataatttctt 18053106  T
Q  111 cttttagaatctttaaagagtgtc 134  Q
    |||||  |||| ||||||||||||    
T  18053107 cttttgaaatccttaaagagtgtc 18053130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 42945012 - 42945125
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 118  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||  |  ||||||||||||||| ||| | |||||||||| | |||||||| |    
T  42945012 ttaaggcctttaaatagtaaattatcataaaaatatgtgtaatcaatgcactggaaatcgaaatatttgagtttttaataaaataatgttttcttttaaa 42945111  T
Q  119 atctttaaagagtg 132  Q
    ||| ||||| ||||    
T  42945112 atccttaaaaagtg 42945125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 6761751 - 6761862
Alignment:
Q  46 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 145  Q
    ||||||| | |||||||||||||| |  ||| ||||||||||||||| ||||| ||| |||||||||||| ||||  |||||||||| |||||| |||||    
T  6761751 tgaaaatttatgtaatcaatgcattggaaattgaaatatttgacttttttatagaatgatttattcttttggaatgcttaaagagtgcctcggaagcact 6761850  T
Q  146 ggttaacaagac 157  Q
     |||||||||||    
T  6761851 tgttaacaagac 6761862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 2393038 - 2393148
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 118  Q
    ||||| |||||| ||||||||||   ||||||| ||||| ||||||||  | ||||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  2393038 ttaagacctttatatagtaactttgtatgaaaacatgtgaaatcaatgtcttgagaatcaaaatatttgacttttttataaattaatttcttcttttaga 2393137  T
Q  119 atctttaaaga 129  Q
    ||| |||||||    
T  2393138 atccttaaaga 2393148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 34546265 - 34546379
Alignment:
Q  18 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 117  Q
    |||||| || ||||||  ||||||||||||||||| |||||||||||||||||   ||||||| ||||||||||| ||||||| |||||| ||| ||| |    
T  34546265 gttaagaccattaaatgataacttatcatgaaaatgtgtgtaatcaatgcatcagaaatcgaagtatttgacttttttataaattaatttcttcatttgg 34546364  T
Q  118 aatctttaaagagtg 132  Q
    |||| | ||||||||    
T  34546365 aatcctcaaagagtg 34546379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 42967066 - 42966938
Alignment:
Q  19 ttaaggcctttaaatagtaa-cttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattctttta 116  Q
    ||||| ||||||||||||||  || |  ||||||| | |||||||||||||||| |||| ||||||||| || ||| |||| ||||||||| ||||||||    
T  42967066 ttaagacctttaaatagtaatttttttttgaaaatttatgtaatcaatgcatcgggaattgaaatatttaactttttttatgaaataatttcttctttta 42966967  T
Q  117 gaatctttaaagagtgtctcggaggcact 145  Q
    | ||  |||||||||||||||||||||||    
T  42966966 gtattcttaaagagtgtctcggaggcact 42966938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 1070639 - 1070568
Alignment:
Q  47 gaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaa 119  Q
    ||||||||||||||||||| ||| || |||| |||||||| |||||||||||||||||| |||||||||||||    
T  1070639 gaaaatatgtgtaatcaat-cattgaaaatcaaaatattttactttattataaaataatatattcttttagaa 1070568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 5961954 - 5962101
Alignment:
Q  12 gcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataattta-t 109  Q
    |||||| ||||| ||||||||||||||||  |  ||||||| | |||||||||||||| |  ||| ||||||||| | ||| || ||  |||| |||  |    
T  5961954 gcactatttaagacctttaaatagtaactgtttttgaaaatttatgtaatcaatgcattggaaattgaaatatttaattttttttatggaatatttttct 5962053  T
Q  110 tcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    |||||||||||  ||||||||||||||||||||||| |||||||||||    
T  5962054 tcttttagaatgcttaaagagtgtctcggaggcactcgttaacaagac 5962101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 157
Target Start/End: Complemental strand, 3882700 - 3882586
Alignment:
Q  43 tcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggc 142  Q
    |||||||||| |||||||||||||||| || || ||||||||||||| || ||| | |||||||  || |||||||||  |||||||||| | ||  |||    
T  3882700 tcatgaaaatgtgtgtaatcaatgcattgaaaaccgaaatatttgacctttttaaagaataattgcttattttagaatgcttaaagagtgccccgagggc 3882601  T
Q  143 actggttaacaagac 157  Q
    ||| |||||||||||    
T  3882600 actcgttaacaagac 3882586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 433551 - 433643
Alignment:
Q  62 caatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt-ctcggaggcactggttaacaa 154  Q
    ||||||||| | |||| |||||||| ||||| ||||||| |||||||||||||| ||||| ||||||||||| ||||| |||||| ||||||||    
T  433551 caatgcatcaaaaatcaaaatatttaacttttttataaattaatttattcttttggaatccttaaagagtgtcctcgg-ggcactcgttaacaa 433643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 8898861 - 8898913
Alignment:
Q  81 atatttgactttattataaaataatttattcttttagaatctttaaagagtgt 133  Q
    ||||||||||||||||||||||||||| || |||||||||| |||||| ||||    
T  8898861 atatttgactttattataaaataatttcttattttagaatcattaaagggtgt 8898913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 18227204 - 18227092
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 144  Q
    |||||||| | | |||||||||||| || |||||||||||||||||||  |  | |||||||  || ||||| ||| ||||||||||||  ||||| |||    
T  18227204 atgaaaatgtatttaatcaatgcattgaaaatcgaaatatttgacttttatgaagaataattacttattttataatgtttaaagagtgttccggagacac 18227105  T
Q  145 tggttaacaagac 157  Q
    | |||||||||||    
T  18227104 tcgttaacaagac 18227092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 2825983 - 2826066
Alignment:
Q  48 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 131  Q
    ||||| |||||||||||||||| |  ||||||||||||| ||||| ||| |||||||||| || |||||| ||  |||||||||    
T  2825983 aaaatgtgtgtaatcaatgcattggaaatcgaaatattttacttttttaaaaaataatttcttattttagtatgcttaaagagt 2826066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 13442636 - 13442703
Alignment:
Q  78 gaaatatttgactttatt-ataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 145  Q
    ||||||||| ||||| || |||||||||||||||||||| |||||||||||||||   |||||||||||    
T  13442636 gaaatatttaactttttttataaaataatttattctttt-gaatctttaaagagtacttcggaggcact 13442703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 35228816 - 35228732
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 129  Q
    ||||||||||||||||| |||||||    |||||||||||||||  || ||| |||||||||| |||||||  |||| |||||||    
T  35228816 atgaaaatatgtgtaataaatgcattagaaatcgaaatatttgatctttttagaaaataatttcttcttttgaaatccttaaaga 35228732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 3199541 - 3199599
Alignment:
Q  74 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 132  Q
    |||| |||||||||| ||| |||||||||||||| || |||||||||  ||||||||||    
T  3199541 aatcaaaatatttgaattttttataaaataatttcttattttagaattattaaagagtg 3199599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 7271880 - 7271769
Alignment:
Q  27 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac----tttattataaaataatttattcttttagaatct 122  Q
    |||||||  |||||| | |||||||||| |||||||||||||| |  |||  |||||||||||    ||| |||||| ||| ||| || ||||||||||     
T  7271880 tttaaatgataactttttatgaaaatatatgtaatcaatgcattggaaataaaaatatttgacttttttttttataagatagtttctttttttagaatcc 7271781  T
Q  123 ttaaagagtgtc 134  Q
    ||||||||||||    
T  7271780 ttaaagagtgtc 7271769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 14102297 - 14102435
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgac-tttattataaaataatttattcttttag 117  Q
    |||||| || ||| ||||||||  | |||||||  ||||||||||||| || |  ||||||||||||| || ||| || | ||||||||| || |||| |    
T  14102297 ttaaggactataagtagtaactatttatgaaaaagtgtgtaatcaatgtattggaaatcgaaatatttaacttttttttttaaataatttcttattttgg 14102396  T
Q  118 aatctttaaagagtgtctcggaggcactggttaacaaga 156  Q
     || |||||||||||   |||||||||| ||||||||||    
T  14102397 catgtttaaagagtgctccggaggcactcgttaacaaga 14102435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 31448315 - 31448400
Alignment:
Q  48 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 133  Q
    |||||||| ||||| |||| ||||  |||| |||| ||| | ||| |||||||||||||| ||||||   ||||||||||||||||    
T  31448315 aaaatatgagtaattaatgtatcggaaatcaaaatttttaaattttttataaaataatttcttctttagaaatctttaaagagtgt 31448400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 45212110 - 45212057
Alignment:
Q  74 aatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 127  Q
    |||| |||||||||| ||| ||||||||||||||||  |||||||||| |||||    
T  45212110 aatcaaaatatttgatttttttataaaataatttatctttttagaatccttaaa 45212057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 33275918 - 33276005
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgt 133  Q
    |||||||| |||||| || ||| || || ||| ||||||||| ||||| ||| |||||||||| || |||||||||  |||||||||||    
T  33275918 atgaaaatgtgtgta-tctatgtattgaaaattgaaatatttaacttttttaaaaaataatttcttgttttagaatgcttaaagagtgt 33276005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 30412910 - 30413030
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    |||||| ||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| ||| ||    
T  30412910 ggcactggttaaggcctttaaatagtaatttatcacgaaaatatgtataatcaatgcatcgggaatcgaaatatttgactttatcataaaatagtttctt 30413009  T
Q  111 cttttagaatctttaaagagt 131  Q
    |||||  |||| |||||||||    
T  30413010 cttttgaaatccttaaagagt 30413030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 8170147 - 8170001
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||| ||||||||| ||||  |||| |||||||||||||| |||||||||||||| ||    
T  8170147 ggcactagttaaggtctttaaaaagtaacttatcatgaacatatgtataatcaatgtatcggaaatcaaaatatttgacttttttataaaataatttctt 8170048  T
Q  111 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||| ||||| |||||||||||  |||  | ||| |||||||||||    
T  8170047 cttttggaatccttaaagagtgttccgggagtacttgttaacaagac 8170001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 48137899 - 48137789
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    |||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||    
T  48137899 ggcactagttaatgcttttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttataaaataatttctt 48137800  T
Q  111 cttttagaatc 121  Q
    ||||| |||||    
T  48137799 cttttggaatc 48137789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 132
Target Start/End: Complemental strand, 42493798 - 42493703
Alignment:
Q  38 acttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattat-aaaataatttattcttttagaatctttaaagagtg 132  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||| ||||||| ||||| ||||||||||    
T  42493798 acttatcatgaaaatatgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttatcaaaataatttcttcttttggaatccttaaagagtg 42493703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 47507711 - 47507580
Alignment:
Q  26 ctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttta 125  Q
    |||||||| ||||||| ||||||||| ||||||||||||| |||||  ||| ||||| ||||| ||| ||||||||| |||| ||||||||||||| |||    
T  47507711 ctttaaatggtaacttctcatgaaaaaatgtgtaatcaatacatcggaaattgaaatctttgatttttttataaaattatttcttcttttagaatcctta 47507612  T
Q  126 aagagtgtctcggaggcactggttaacaagac 157  Q
    ||||||| | ||||| |||| |||||||||||    
T  47507611 aagagtgccccggagacactcgttaacaagac 47507580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 38452283 - 38452146
Alignment:
Q  15 ctagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttt 114  Q
    ||||||||||||||||||   ||| |||| |||||||||||||||| ||||||||||  ||| ||||||||||||||| |||||||||||||| ||||||    
T  38452283 ctagttaaggcctttaaaagataatttattatgaaaatatgtgtaaccaatgcatcggaaattgaaatatttgacttttttataaaataatttcttcttt 38452184  T
Q  115 tagaatctttaaagagtgtctcggaggcactggttaaca 153  Q
    |  |||| ||||||| ||| |||| |||||| |||||||    
T  38452183 ttaaatccttaaagaatgt-tcgggggcactcgttaaca 38452146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 2964146 - 2964049
Alignment:
Q  30 aaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 127  Q
    ||||||||||||||||| ||||||||||||||||||| ||||| |||| |||| ||| | ||| |||||||||||||| |||||||||||||||||||    
T  2964146 aaatagtaacttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatttttaatttttttataaaataatttcttcttttagaatctttaaa 2964049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 16878809 - 16878677
Alignment:
Q  25 cctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatcttt 124  Q
    |||||||||||||||||  ||| ||||||| |||||||||||||| |||||||||||||||| ||||| |||| ||||||||| |  || | ||||||||    
T  16878809 cctttaaatagtaactttgcataaaaatatttgtaatcaatgcattgagaatcgaaatatttaacttttttatgaaataatttctctttattgaatcttt 16878710  T
Q  125 aaagagtgtctcggaggcactggttaacaagac 157  Q
    |||||||||| ||||  |||  |||||||||||    
T  16878709 aaagagtgtcccggaaacacctgttaacaagac 16878677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 44391426 - 44391537
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt-gactttattataaaataatttattcttttag 117  Q
    ||||| ||||||||| |||||||   |||||||||| | ||||||||||||  | ||||||||||||| |||||| ||||||||||||||||||||||||    
T  44391426 ttaagacctttaaatggtaactttgtatgaaaatatatataatcaatgcattaaaaatcgaaatattttgacttt-ttataaaataatttattcttttag 44391524  T
Q  118 aatctttaaagag 130  Q
    |||||||||||||    
T  44391525 aatctttaaagag 44391537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 46684550 - 46684626
Alignment:
Q  15 ctagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactt 91  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  46684550 ctagttaaggcctttaaatggtaatttatcatgaaaatatatgtaatcaatgcgtcgaaaatcgaaatatttgactt 46684626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 5248179 - 5248088
Alignment:
Q  43 tcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtc 134  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| |||||||  |||| ||||||| ||||    
T  5248179 tcataaaaatatgtgtaatcaatgcatcaataatcgaaatatttgacttttttataaaataatttcttcttttgaaatccttaaagaatgtc 5248088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 2741260 - 2741168
Alignment:
Q  40 ttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtg 132  Q
    |||| |||||||||||||||||||||||||||  |||| |||||||||| ||| | |||||||||||| |||||||| |||| ||||||||||    
T  2741260 ttattatgaaaatatgtgtaatcaatgcatcggaaatcaaaatatttgattttttaataaaataattttttcttttaaaatccttaaagagtg 2741168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 15034793 - 15034911
Alignment:
Q  16 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatc-aatgcatcgagaatcgaaatatttgactttattataaaataatttattcttt 114  Q
    |||||||||||||||||  ||||||||| ||||||||| |||||||| ||||||| |   |||||||||||||||||| |||||||||| ||| || | |    
T  15034793 tagttaaggcctttaaaaggtaacttattatgaaaatacgtgtaatcaaatgcattggatatcgaaatatttgacttt-ttataaaatattttcttttct 15034891  T
Q  115 tagaatctttaaagagtgtc 134  Q
    | ||||| ||||||||||||    
T  15034892 tggaatccttaaagagtgtc 15034911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 43670517 - 43670409
Alignment:
Q  21 aaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaat 120  Q
    |||| |||||||| |||| ||||||| |||| || |||||||| |||||||| |||| |||| ||||| ||| ||||||||| |||| ||| |||| |||    
T  43670517 aaggtctttaaatggtaatttatcataaaaacatatgtaatcagtgcatcgaaaatcaaaatctttgatttttttataaaattatttcttcatttaaaat 43670418  T
Q  121 ctttaaaga 129  Q
    |||||||||    
T  43670417 ctttaaaga 43670409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 47305516 - 47305592
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaa-tcgaaatattt 86  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||| ||||| || |||||||||||    
T  47305516 ggcactagttaaggtgtttaaatggtaacttatcatgaaaatatgtgtaatctatggatcgaaaattcgaaatattt 47305592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 676400 - 676488
Alignment:
Q  48 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcg 137  Q
    ||||||||||||||||||||||  | ||||||||||||| ||||| |||  ||||||||  || ||||||||| ||||||||||||||||    
T  676400 aaaatatgtgtaatcaatgcatttaaaatcgaaatatttaacttt-ttaataaataattacttattttagaatgtttaaagagtgtctcg 676488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 37352436 - 37352535
Alignment:
Q  46 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 145  Q
    ||||||| |||||||| ||||||| |  ||| ||||||||||||||| | ||  |||||||| || |||| ||||| ||||||| |||||||||||||||    
T  37352436 tgaaaatttgtgtaattaatgcattggaaattgaaatatttgactttttaatggaataatttcttgtttttgaatccttaaagaatgtctcggaggcact 37352535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 33887887 - 33887971
Alignment:
Q  56 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggag 140  Q
    |||||||||||||| || ||| ||||||||||||||| ||| | |||||||  || |||| ||||  ||||||||||||||||||    
T  33887887 tgtaatcaatgcattgaaaattgaaatatttgacttttttaaagaataattatttattttggaatgcttaaagagtgtctcggag 33887971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 36015002 - 36015141
Alignment:
Q  13 cactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattct 112  Q
    |||||||||||| |||||||  ||||||||     |||||| |||||||||||  || || ||| || |||||||| ||| |||||||||||||| || |    
T  36015002 cactagttaaggtctttaaaaggtaactta-----aaaatacgtgtaatcaataaattgaaaattgacatatttgatttttttataaaataatttctttt 36015096  T
Q  113 tttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    |||  |||| ||||||| |||| ||||| || | |||||||||||    
T  36015097 tttgaaatccttaaagaatgtcccggagacattcgttaacaagac 36015141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 36285774 - 36285887
Alignment:
Q  17 agttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttga-ctttattataaaataatttattctttt 115  Q
    ||||||| ||||||||  |||||||||||| ||||||  ||||||||||| ||||  |||| ||||||||||  ||| |||||||||  ||| |||||||    
T  36285774 agttaagtcctttaaaatgtaacttatcataaaaata--tgtaatcaatgtatcggaaatcaaaatatttgattttttttataaaatgctttcttctttt 36285871  T
Q  116 agaatctttaaagagt 131  Q
    | ||| ||||||||||    
T  36285872 aaaatttttaaagagt 36285887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 45375399 - 45375483
Alignment:
Q  74 aatcgaaatatttgactttattataaaataa-tttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    |||| |||||||| ||||| |||||| |||| ||| ||||||||||||| |||||||||| | |||||||||| ||||| |||||    
T  45375399 aatcaaaatatttaacttttttataacataagtttcttcttttagaatccttaaagagtgccccggaggcactcgttaataagac 45375483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 15995971 - 15995924
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 92  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||||    
T  15995971 atgaaaatatgtgtaatcaatgcattgaaaatcgaaatatttaacttt 15995924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 35754126 - 35754017
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 144  Q
    ||||||| ||||||||| ||||||| || |||||||||| |||| | | |||||||||||||| || ||||  |||  ||||||||||| || ||| |||    
T  35754126 atgaaaacatgtgtaattaatgcattgaaaatcgaaatacttgattattttataaaataatttctttttttgaaattcttaaagagtgtttcagagacac 35754027  T
Q  145 tggttaacaa 154  Q
    | ||| ||||    
T  35754026 tcgttgacaa 35754017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 44495314 - 44495238
Alignment:
Q  29 taaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataat 105  Q
    |||||| |||||| | || ||||||||||||||||||| ||  | ||||||||||||| | ||| ||||||||||||    
T  44495314 taaataataacttgttataaaaatatgtgtaatcaatgaattaaaaatcgaaatatttaaattttttataaaataat 44495238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 14574815 - 14574768
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgacttt 92  Q
    ||||||||||||||||||||||||| || ||||||| ||||| |||||    
T  14574815 atgaaaatatgtgtaatcaatgcattgaaaatcgaagtatttaacttt 14574768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 35599837 - 35599944
Alignment:
Q  56 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 155  Q
    |||| ||||||||| || | | ||| ||||||| ||| ||| | ||||||||  |  ||||| || |||||||||| ||||||||||||| |||||||||    
T  35599837 tgtattcaatgcattgaaatttgaactatttgaattttttaaagaataatttcctaatttagtatgtttaaagagtatctcggaggcactcgttaacaag 35599936  T
Q  156 acaattaa 163  Q
    || |||||    
T  35599937 accattaa 35599944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 31477175 - 31477085
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattt-attcttttagaatctttaaagagtgtc 134  Q
    ||||||||||||||||||||||||| || |||| |  | |||||| || ||||| ||||||||  || |||||||||| ||||| ||||||    
T  31477175 atgaaaatatgtgtaatcaatgcattgaaaatcaatttttttgacgtttttatacaataatttcttttttttagaatccttaaatagtgtc 31477085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 158
Target Start/End: Original strand, 10031945 - 10032058
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 144  Q
    |||||||  |||||||||||||||| |  |||||||| |||| ||||| | | |||||||||  |  |||| ||||  |||||||||||| ||| |||||    
T  10031945 atgaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaactttttaaaaaaataattactaattttggaatgcttaaagagtgtcccgggggcac 10032044  T
Q  145 tggttaacaagaca 158  Q
    | |||||| |||||    
T  10032045 tcgttaacgagaca 10032058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 25120218 - 25120271
Alignment:
Q  82 tatttgactttattataaaataatttattcttttagaatctttaaagagtgtct 135  Q
    ||||||||||| ||| |||||||||||||  |||  ||||||||||||||||||    
T  25120218 tatttgacttttttaaaaaataatttattaatttgaaatctttaaagagtgtct 25120271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 27359466 - 27359398
Alignment:
Q  19 ttaaggcctttaaatagtaacttatc-atgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt 86  Q
    ||||| ||||||||||||||||| |  ||||||| | ||||||||||||||| |  |||||||||||||    
T  27359466 ttaagacctttaaatagtaacttttttatgaaaacaagtgtaatcaatgcattggaaatcgaaatattt 27359398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 31206426 - 31206280
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  |||| |||||||||| ||| |||||||||||||| |     
T  31206426 ggcattagttaaggcctttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcggaaatcaaaatatttgatttttttataaaataatttcta 31206327  T
Q  111 cttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||| ||||| |||||||||  ||||  || ||| |||||||||||    
T  31206326 ctttttgaatccttaaagagtacctcgtggggactcgttaacaagac 31206280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 38956992 - 38956884
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 118  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||   |||||||||    
T  38956992 ttaaggtctttaaatgataacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaattaattacatcttttaga 38956893  T
Q  119 atctttaaa 127  Q
    ||| |||||    
T  38956892 atccttaaa 38956884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 5217747 - 5217869
Alignment:
Q  10 aggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttat 109  Q
    ||||||||||||||  ||||| || |||| ||||||| |||||||||||||||||| |||||  ||||||||||||||||||| ||||||||| ||||||    
T  5217747 aggcactagttaagatctttatatggtaatttatcataaaaatatgtgtaatcaatacatcggaaatcgaaatatttgacttttttataaaatcatttat 5217846  T
Q  110 tcttttagaatctttaaagagtgtc 134  Q
      |||| ||||| ||||||||||||    
T  5217847 --tttttgaatccttaaagagtgtc 5217869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 45368729 - 45368834
Alignment:
Q  27 tttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaa 126  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||| ||| ||||||||| ||||| |||||||||||||| || |||| ||||| ||||    
T  45368729 tttaaatggtaacttatcatgaaaatatgtataatcattgcatcgaaaattgaaatatttaacttttttataaaataatttctttttttggaatccttaa 45368828  T
Q  127 agagtg 132  Q
    ||||||    
T  45368829 agagtg 45368834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 5020051 - 5020162
Alignment:
Q  18 gttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttag 117  Q
    |||||||||||||||| ||||||| ||||||||||  |||||||||||| ||||  ||| ||||| ||||||||| ||||||||| |||| |||||||||    
T  5020051 gttaaggcctttaaatggtaacttgtcatgaaaat--gtgtaatcaatgtatcggaaattgaaatctttgacttttttataaaattatttcttcttttag 5020148  T
Q  118 aatctttaaagagt 131  Q
    |||| |||||||||    
T  5020149 aatccttaaagagt 5020162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 20169716 - 20169827
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatattt-gactttattataaaataatttattcttttag 117  Q
    ||||| ||||||||| |||||||   |||||||||| | ||||||||||||  | ||||||||||||| |||||| ||||||||||||||||||||||||    
T  20169716 ttaagacctttaaatggtaactttgtatgaaaatatatataatcaatgcattaaaaatcgaaatattttgacttt-ttataaaataatttattcttttag 20169814  T
Q  118 aatctttaaagag 130  Q
    |||||||||||||    
T  20169815 aatctttaaagag 20169827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 9633040 - 9632898
Alignment:
Q  16 tagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataattta--ttctt 113  Q
    ||||||||| |||||||| | || |||| ||||||||||||||||||||||||||   |||| |||||||||||||| || || |||  ||||  || ||    
T  9633040 tagttaaggtctttaaatggcaatttattatgaaaatatgtgtaatcaatgcatctgaaatcaaaatatttgacttt-ttttataattttttattttttt 9632942  T
Q  114 ttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||  ||||||||||||||| | ||||| |||| |||||||||||    
T  9632941 ttgaaatctttaaagagtgacccggagacacttgttaacaagac 9632898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 33636767 - 33636685
Alignment:
Q  78 gaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagacaat 160  Q
    |||| |||||||||| |||| ||||||||| | ||||||||||  ||||||||||||||||  ||||| ||||| ||||||||    
T  33636767 gaaacatttgacttttttatgaaataatttctccttttagaatgcttaaagagtgtctcgggcgcactcgttaataagacaat 33636685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 39691121 - 39691247
Alignment:
Q  28 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 127  Q
    ||||||||||| || | |||||||| |||||| ||||||||| || ||| ||| ||||||||||| ||| | |||||||| ||  | | ||||  |||||    
T  39691121 ttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaatgtggaatgcttaaa 39691220  T
Q  128 gagtgtctcggaggcactggttaacaa 154  Q
    ||||||||||  |||||| ||||||||    
T  39691221 gagtgtctcgagggcactcgttaacaa 39691247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 7044329 - 7044442
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 118  Q
    ||||| |||||| ||| ||||||   ||||||| | |||||||||| || |  | ||||||||| ||||||||| | ||||| |||||| ||||||||||    
T  7044329 ttaagacctttatataataactttgtatgaaaacacgtgtaatcaaagccttaaaaatcgaaatgtttgactttttaataaattaatttcttcttttaga 7044428  T
Q  119 atctttaaagagtg 132  Q
    ||| ||||||||||    
T  7044429 atccttaaagagtg 7044442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 24103087 - 24103187
Alignment:
Q  57 gtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 156  Q
    ||||||| |||||||  |||||||| ||||||| || | | |||||||||| || |||||||||  ||||||||||||||||| ||| | |||||| |||    
T  24103087 gtaatcattgcatcggaaatcgaaacatttgaccttttaaaaaaataatttcttattttagaatgcttaaagagtgtctcggaagcaatcgttaacgaga 24103186  T
Q  157 c 157  Q
    |    
T  24103187 c 24103187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 39932721 - 39932813
Alignment:
Q  65 tgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||| || ||| ||||||||||||||| ||||  ||| |||  |||||||||||| |||||||||||| ||||||| | | |||||||||||    
T  39932721 tgcatggaaaattgaaatatttgacttttttatggaattattacttcttttagaatgtttaaagagtgtttcggaggaattcgttaacaagac 39932813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 10335020 - 10335159
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttatt-ataaaataatttattcttttag 117  Q
    ||||||||||||||| |||| || |  ||||||| ||| |||| ||||||| || |||   ||||||||||||| || ||| |||||||||||||||| |    
T  10335020 ttaaggcctttaaattgtaattttttgtgaaaatttgtataattaatgcattgaaaattataatatttgactttttttatagaataatttattcttttgg 10335119  T
Q  118 aatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    |||  ||||||||||   || | ||||| |||||||||||    
T  10335120 aattcttaaagagtgctccgaatgcactcgttaacaagac 10335159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 36819755 - 36819793
Alignment:
Q  94 ttataaaataatttattcttttagaatctttaaagagtg 132  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  36819755 ttataaaataattttttcttttagaatctttaaagagtg 36819793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 37564393 - 37564468
Alignment:
Q  82 tatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||||||||| ||| | |||||||| ||  ||||| || ||||||||||||| | |||||||| |||||||||||    
T  37564393 tatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtgtcccagaggcactcgttaacaagac 37564468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 2124141 - 2124203
Alignment:
Q  94 ttataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 156  Q
    ||||| |||||||| |||||||||||| |||||||| ||||||||   |||| ||||||||||    
T  2124141 ttatagaataatttcttcttttagaatgtttaaagaatgtctcgggaacactcgttaacaaga 2124203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 5968377 - 5968437
Alignment:
Q  97 taaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaagac 157  Q
    ||||||||||  || ||||||||| ||||||||||| |  ||||||||| |||||||||||    
T  5968377 taaaataattgcttgttttagaatgtttaaagagtgccctggaggcactcgttaacaagac 5968437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 22209488 - 22209376
Alignment:
Q  45 atgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcac 144  Q
    |||||||||| |||||||||||  | |  |||| |||||||| ||||| |||   |||||||  |||||||| |||  |||||||||||| ||||| |||    
T  22209488 atgaaaatatatgtaatcaatgtcttggaaatcaaaatatttaacttttttaaggaataattgcttcttttaaaatgcttaaagagtgtcccggagacac 22209389  T
Q  145 tggttaacaagac 157  Q
    | ||||| |||||    
T  22209388 ttgttaataagac 22209376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 12383008 - 12383129
Alignment:
Q  11 ggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttatt 110  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||||||  |||| |||||||| ||||| |||||||||||||| |     
T  12383008 ggcactagttaagtcctttaaatagtaatttatcataaaaatatgtataatcaatgcatcggaaatcaaaatatttaacttttttataaaataatttctc 12383107  T
Q  111 cttttagaatctttaaagagtg 132  Q
    |||||  |||  ||||||||||    
T  12383108 cttttgaaattcttaaagagtg 12383129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 16442188 - 16442075
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 118  Q
    ||||| |||||| ||||||||||   ||||||| |||||||||||||   | || |||| |||| ||||||||| ||||||| |||||||||||||||||    
T  16442188 ttaagacctttatatagtaactttgtatgaaaacatgtgtaatcaatattttgaaaatcaaaatgtttgacttttttataaactaatttattcttttaga 16442089  T
Q  119 atctttaaagagtg 132  Q
    ||||||||||||||    
T  16442088 atctttaaagagtg 16442075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 8176419 - 8176324
Alignment:
Q  34 agtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaaga 129  Q
    |||||||||| ||||||||||||||||| |||||||||| ||| ||||| ||||||||| ||| ||| | |||| ||||||||||||| |||||||    
T  8176419 agtaacttattatgaaaatatgtgtaattaatgcatcgaaaattgaaatttttgacttttttaaaaatttatttcttcttttagaatccttaaaga 8176324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 12307904 - 12307821
Alignment:
Q  48 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagt 131  Q
    |||||||||||||| |||| || || |||  |||||||||||||| |||||||||||||| |||||||  |||| |||||||||    
T  12307904 aaaatatgtgtaattaatgtattgaaaattaaaatatttgacttttttataaaataatttcttcttttgaaatccttaaagagt 12307821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 31702747 - 31702874
Alignment:
Q  28 ttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaa 127  Q
    |||||||||||||| | || ||||||||||||||||||||||    |||  ||||| || ||||| |||||||||||||| |||||||  |||  |||||    
T  31702747 ttaaatagtaactttttataaaaatatgtgtaatcaatgcattagaaattaaaatacttaacttttttataaaataatttcttcttttgaaattcttaaa 31702846  T
Q  128 gagtgtctcggaggcactggttaacaagac 157  Q
    ||||| | ||||  |||| |||||||||||    
T  31702847 gagtgccccgga--cactcgttaacaagac 31702874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 7465558 - 7465451
Alignment:
Q  46 tgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcact 145  Q
    ||||||| | ||||||||||||||||  ||| ||||||||||||||| ||||  || ||||| |||||| |||||| ||||| |||| | ||| ||||||    
T  7465558 tgaaaatttatgtaatcaatgcatcggaaattgaaatatttgacttttttatggaacaatttcttctttaagaatccttaaaaagtg-cccgggggcact 7465460  T
Q  146 ggttaacaa 154  Q
     ||||||||    
T  7465459 cgttaacaa 7465451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 22695473 - 22695549
Alignment:
Q  13 cactagttaaggcctttaaatagtaacttatcatgaaaa-tatgtgtaatcaatgcatcgagaatcgaaatatttga 88  Q
    |||| |||||||| ||||||| ||||||| | || |||| ||||||||||||||||||||| ||| |||||||||||    
T  22695473 cactcgttaaggcttttaaatggtaactttttattaaaaatatgtgtaatcaatgcatcgaaaattgaaatatttga 22695549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 22696000 - 22696071
Alignment:
Q  85 ttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaaga 156  Q
    |||| ||| |||||||||||||| ||||||| ||||| ||||||||||  || |||||||| ||||||||||    
T  22696000 ttgatttttttataaaataatttcttcttttggaatccttaaagagtgcatcagaggcactcgttaacaaga 22696071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 35241509 - 35241410
Alignment:
Q  30 aaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactt-tattataaaataatttattcttttagaatctttaaag 128  Q
    |||| |||||||||||| ||||||||| |||||||||||||   |||| |||||||| | || | |||||||||||||| || ||||| |||| ||||||    
T  35241509 aaatggtaacttatcataaaaatatgtataatcaatgcatcagaaatcaaaatatttaatttcttttataaaataatttctttttttaaaatccttaaag 35241410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 6048268 - 6048381
Alignment:
Q  19 ttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttaga 118  Q
    ||||| |||||| ||||||||||   ||||||| |||||||||||||   | |  |||  |||| ||| ||||| ||||||| |||||| ||||||||||    
T  6048268 ttaagacctttatatagtaactttgtatgaaaacatgtgtaatcaatatcttggaaattaaaatgtttcacttttttataaattaatttcttcttttaga 6048367  T
Q  119 atctttaaagagtg 132  Q
    || |||||||||||    
T  6048368 atttttaaagagtg 6048381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 26311889 - 26311807
Alignment:
Q  48 aaaatatgtgtaatcaatgcatcgagaatcgaaatatttgact-ttattataaaataatttattcttttagaatctttaaaga 129  Q
    |||||||||||||| |||| || || |||| |||||||| ||  || ||||||| ||||||||||||| |||||| |||||||    
T  26311889 aaaatatgtgtaattaatgtattgaaaatcaaaatatttaaccatttttataaattaatttattctttcagaatccttaaaga 26311807  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 30509387 - 30509286
Alignment:
Q  56 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 155  Q
    |||||||||||||| || ||||||||| ||||| ||| ||| | |||||||  || |||| | ||  |||||||||||  ||||| |||| |||||||||    
T  30509387 tgtaatcaatgcattgaaaatcgaaatgtttgatttttttaaagaataattgcttattttggtatgcttaaagagtgttccggagacactcgttaacaag 30509288  T
Q  156 ac 157  Q
    ||    
T  30509287 ac 30509286  T

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Target: scaffold0246 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 18144 - 18245
Alignment:
Q  56 tgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatctttaaagagtgtctcggaggcactggttaacaag 155  Q
    ||||||||||| |||| |||| ||||||||||||||| |||| | ||||||| ||||||||| ||| |||||||||||| | |||||||| ||| |||||    
T  18144 tgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatccttaaagagtgtcccagaggcactcgtttacaag 18243  T
Q  156 ac 157  Q
    ||    
T  18244 ac 18245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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