View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_388 (Length: 250)
Name: NF10145A_low_388
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_388 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 39209082 - 39209316
Alignment:
| Q |
12 |
agatggacatcacgtgtttgcgcttggagaaaatttaacttctcggtgtaaatgcatttaaccaccattaaaaagcttttctacattttgtctttccatt |
111 |
Q |
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| T |
39209082 |
agatggccattacgtgtttgcgcttggagaaaatttaacttctcggtgtaaatgcatttaaccaccattaaaaagcttttctacattttgtctttccatt |
39209181 |
T |
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| Q |
112 |
agacatccttatgttgcttgttgagcactctaaagttattctatagtcattgtttatacgattggtgcataattttttctattatcgctttacaacgttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39209182 |
agacatccttatgttgcttgttgagcactctaaagttattttatagtcattgtttatacgattggtgcataattttttctattatcgctttacaacgttc |
39209281 |
T |
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| Q |
212 |
actttttactttaagactattttatgatatgcagt |
246 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
39209282 |
actttttactttaagactattttatgataagcagt |
39209316 |
T |
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