View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_393 (Length: 250)
Name: NF10145A_low_393
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_393 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 40688442 - 40688205
Alignment:
| Q |
1 |
attagaggcattcataaaggatctaacatattgaatgatgggagcataaggatgaatgtatataggattattccttacactcagattctatcagattgga |
100 |
Q |
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| T |
40688442 |
attagaggcattcataaaggatctaacatattgaatgatgggagcataaggatgagtgtatataggattattccttacactcagattctatcagattgga |
40688343 |
T |
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| Q |
101 |
gatagtcttgcagttagattcacaaatggcttccttaaaaccgttactccaatatcccaagtgatcaaaaccaaactatgagcaaaattgcatgtaattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40688342 |
gatagtcttgcagttagattcacaaatggcttccttaaaaccgttactccaatatcccaagtgatcagaaccaaactatgagcaaaattgcatgtaattc |
40688243 |
T |
|
| Q |
201 |
cacagcgatattataagtatagtcaataacctaatatt |
238 |
Q |
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||| ||||||||||||||||||||||||||||||||| |
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| T |
40688242 |
aacatcgatattataagtatagtcaataacctaatatt |
40688205 |
T |
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