View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_394 (Length: 250)
Name: NF10145A_low_394
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_394 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 29607414 - 29607644
Alignment:
| Q |
11 |
atggacatcaattttcaccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgaccaaatacagttcaacttttgcttaaaaa |
110 |
Q |
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| T |
29607414 |
atggacatcaattttcaccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgagcaaatacagttcaacttttgcttaaaaa |
29607513 |
T |
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| Q |
111 |
attgaccacagggagttccaagtgacgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacatcat |
210 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29607514 |
attgaccacagggagttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacgtcat |
29607613 |
T |
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| Q |
211 |
tacaacagtcctcttcctctgtccattcatt |
241 |
Q |
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| T |
29607614 |
tacaacagtcctcttcctctgtccattcatt |
29607644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 55353517 - 55353289
Alignment:
| Q |
11 |
atggacatcaattttcaccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgaccaaatacagttcaacttt-tgcttaaaa |
109 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
55353517 |
atggacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataatttttttaccaaatacagttcaacttaatgcttaaaa |
55353418 |
T |
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| Q |
110 |
aattgaccacagggagttccaagtgacgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacatca |
209 |
Q |
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| T |
55353417 |
---tgaccatagggagtttcaaatgaagagaagatgtatagggattgacagaatcatatcacacaaaagcctcatcgcacagattgagcaacttacgtca |
55353321 |
T |
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| Q |
210 |
ttacaacagtcctcttcctctgtccattcatt |
241 |
Q |
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| T |
55353320 |
ttacaaaagtcttcttcctctgcctattcatt |
55353289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 18446347 - 18446574
Alignment:
| Q |
11 |
atggacatcaattttcaccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgaccaaatacagttcaacttt-tgcttaaaa |
109 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||| |||||||||| |||||||| ||||||||| |
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| T |
18446347 |
atggacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacaattcaacttaatgcttaaaa |
18446446 |
T |
|
| Q |
110 |
aattgaccacagggagttccaagtgacgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacatca |
209 |
Q |
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| T |
18446447 |
---tgaccatagagagttccaagtgaagagaagatgtatagggattgacagaatcatatcacacaaa-gcctcatcgcacagattgagcaacttacgtca |
18446542 |
T |
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| Q |
210 |
ttacaacagtcctcttcctctgtccattcatt |
241 |
Q |
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|||||| ||||||||||||||| | ||||||| |
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| T |
18446543 |
ttacaaaagtcctcttcctctgcctattcatt |
18446574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 36404125 - 36404339
Alignment:
| Q |
25 |
tcaccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgaccaaatacagttcaacttt-tgcttaaaaaattgaccacaggg |
123 |
Q |
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|||||||||||||| ||||| ||||||| ||||||||| ||||||| ||||| ||||||||| ||||||||| ||||||||| |||||| |||| |
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| T |
36404125 |
tcaccattcacaaataaatatgcactccctccggtcttgaacaatataatttttttaccaaatactgttcaacttaatgcttaaaa---tgaccataggg |
36404221 |
T |
|
| Q |
124 |
agttccaagtgacgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacatcattacaacagtcctc |
223 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| | ||||| || |||||||||||||| ||||||||| ||||||| |
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| T |
36404222 |
agttccaagtggagagaagatgtatagggattgacagaatcatatcacacaaaagcctcatcgcatagattgagcaacttacgtcattacaaaagtcctc |
36404321 |
T |
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| Q |
224 |
ttcctctgtccattcatt |
241 |
Q |
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|||||||| | ||||||| |
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| T |
36404322 |
ttcctctgcctattcatt |
36404339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 13674233 - 13674274
Alignment:
| Q |
11 |
atggacatcaattttcaccattcacaaaataatatttactcc |
52 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||| |
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| T |
13674233 |
atggacatcaattttcaccattcacaaataaatatgtactcc |
13674274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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