View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_395 (Length: 250)

Name: NF10145A_low_395
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_395
NF10145A_low_395
[»] chr2 (7 HSPs)
chr2 (29-103)||(22886250-22886324)
chr2 (167-247)||(22886106-22886186)
chr2 (41-99)||(29486220-29486278)
chr2 (32-96)||(2062069-2062133)
chr2 (32-83)||(20262958-20263009)
chr2 (32-96)||(16959120-16959184)
chr2 (32-96)||(27738979-27739042)
[»] chr3 (2 HSPs)
chr3 (35-96)||(2394823-2394884)
chr3 (41-96)||(45163167-45163222)
[»] chr5 (1 HSPs)
chr5 (45-96)||(27712240-27712291)
[»] chr1 (4 HSPs)
chr1 (41-96)||(24450638-24450693)
chr1 (32-96)||(50590172-50590236)
chr1 (41-97)||(19597788-19597844)
chr1 (32-83)||(24886447-24886498)
[»] chr7 (1 HSPs)
chr7 (33-93)||(38165799-38165859)
[»] chr8 (1 HSPs)
chr8 (41-96)||(37987701-37987756)


Alignment Details
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 22886324 - 22886250
Alignment:
Q  29 ggttgttgctctaaagggtttggtgcgtaggcgctccgtgttagtggtagtagtcattcatgtacctttcagatc 103  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| |||||    
T  22886324 ggttgttgctctaaagggtttggtgcgtaggcgctccgtgttggtggtactagtcattcatgtatcttttagatc 22886250  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 22886186 - 22886106
Alignment:
Q  167 actccaagcacagacgcattctccttgtcaccggcgaacatannnnnnnatctgagttttgtttccgcttcagactggcgt 247  Q
    |||||||| || |||||||||||||||||||| |||||||||       ||||| ||||||||||||||||||||||||||    
T  22886186 actccaaggacggacgcattctccttgtcaccagcgaacatatttttttatctgggttttgtttccgcttcagactggcgt 22886106  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 29486220 - 29486278
Alignment:
Q  41 aaagggtttggtgcgtaggcgctccgtgttagtggtagtagtcattcatgtacctttca 99  Q
    |||||||||||||||||| | ||||||| | | ||||||||||||||||||||||||||    
T  29486220 aaagggtttggtgcgtagacactccgtgatggcggtagtagtcattcatgtacctttca 29486278  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 2062069 - 2062133
Alignment:
Q  32 tgttgctctaaagggtttggtgcgtaggcgctccgtgttagtggtagtagtcattcatgtacctt 96  Q
    |||||||| |||| ||| ||||| ||| ||||||||||| | ||||||||||||| |||||||||    
T  2062069 tgttgctcgaaagagttgggtgcttagacgctccgtgttggcggtagtagtcatttatgtacctt 2062133  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 20263009 - 20262958
Alignment:
Q  32 tgttgctctaaagggtttggtgcgtaggcgctccgtgttagtggtagtagtc 83  Q
    |||||||| |||| ||||||||||||| ||||||||||| | ||||||||||    
T  20263009 tgttgctcgaaagagtttggtgcgtagtcgctccgtgttggcggtagtagtc 20262958  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 16959120 - 16959184
Alignment:
Q  32 tgttgctctaaagggtttggtgcgtaggcgctccgtgttagtggtagtagtcattcatgtacctt 96  Q
    |||||||| ||| |||||| ||| ||| | ||| ||||| | |||||||||||||||||||||||    
T  16959120 tgttgctcgaaaaggtttgatgcatagacactctgtgttggcggtagtagtcattcatgtacctt 16959184  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 27738979 - 27739042
Alignment:
Q  32 tgttgctctaaagggtttggtgcgtaggcgctccgtgttagtggtagtagtcattcatgtacctt 96  Q
    |||||||| |||| ||||||||| | | ||||||||||| | ||||||||||||| |||||||||    
T  27738979 tgttgctcgaaagagtttggtgcattgacgctccgtgttggcggtagtagtcatt-atgtacctt 27739042  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 2394884 - 2394823
Alignment:
Q  35 tgctctaaagggtttggtgcgtaggcgctccgtgttagtggtagtagtcattcatgtacctt 96  Q
    ||||| |||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||    
T  2394884 tgctcgaaagggtttggtgcttagacgctccgtgttggcggtagtagtcattcatgtacctt 2394823  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 45163167 - 45163222
Alignment:
Q  41 aaagggtttggtgcgtaggcgctccgtgttagtggtagtagtcattcatgtacctt 96  Q
    |||| ||||||||| ||| ||||||||||| | |||||||||||||||||||||||    
T  45163167 aaagagtttggtgcttagacgctccgtgttggcggtagtagtcattcatgtacctt 45163222  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 27712240 - 27712291
Alignment:
Q  45 ggtttggtgcgtaggcgctccgtgttagtggtagtagtcattcatgtacctt 96  Q
    |||||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  27712240 ggtttggtgcatagacgctccgtgttagcggtagtagtcattcatgtacctt 27712291  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 24450693 - 24450638
Alignment:
Q  41 aaagggtttggtgcgtaggcgctccgtgttagtggtagtagtcattcatgtacctt 96  Q
    |||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||    
T  24450693 aaagggtttggtgcttagacgctccgtgttggcggtagtagtcattcatgtacctt 24450638  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 50590236 - 50590172
Alignment:
Q  32 tgttgctctaaagggtttggtgcgtaggcgctccgtgttagtggtagtagtcattcatgtacctt 96  Q
    |||||||| |||||||||||||| |||  |||||||||| | |||||||||||| ||||||||||    
T  50590236 tgttgctcgaaagggtttggtgcatagatgctccgtgttggcggtagtagtcatccatgtacctt 50590172  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 19597788 - 19597844
Alignment:
Q  41 aaagggtttggtgcgtaggcgctccgtgttagtggtagtagtcattcatgtaccttt 97  Q
    |||||| ||||||| ||| ||||||||||| | ||| ||||||||||||||||||||    
T  19597788 aaagggcttggtgcatagacgctccgtgttggcggtggtagtcattcatgtaccttt 19597844  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 24886447 - 24886498
Alignment:
Q  32 tgttgctctaaagggtttggtgcgtaggcgctccgtgttagtggtagtagtc 83  Q
    |||||||| |||| ||||||||||||| ||||||||||| | ||||||||||    
T  24886447 tgttgctcgaaagagtttggtgcgtagtcgctccgtgttggcggtagtagtc 24886498  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 38165859 - 38165799
Alignment:
Q  33 gttgctctaaagggtttggtgcgtaggcgctccgtgttagtggtagtagtcattcatgtac 93  Q
    ||||||| |||||||||||||| ||| ||||||||||| |  | |||||||||||||||||    
T  38165859 gttgctcgaaagggtttggtgcatagacgctccgtgttggcagcagtagtcattcatgtac 38165799  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 37987756 - 37987701
Alignment:
Q  41 aaagggtttggtgcgtaggcgctccgtgttagtggtagtagtcattcatgtacctt 96  Q
    |||||||| ||||||||| ||||||||||| | |||||||||| ||| ||||||||    
T  37987756 aaagggttaggtgcgtagacgctccgtgttggcggtagtagtcgttcgtgtacctt 37987701  T

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