View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_396 (Length: 250)

Name: NF10145A_low_396

Description: NF10145A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10145A_low_396

[»] chr8 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 216; E-Value: 1e-119

Query Start/End: Original strand, 10 - 244

Target Start/End: Original strand, 26411922 - 26412159

Alignment:

Q	10	tcaaagatatattgtggatttg---tagttaaattagagtgaatcatcgatttattctgttacagacattctattccttgaaatttacagaaattcaaaa	106	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	26411922	tcaaagatatattgtggatttgaagtagttaaattagagtgaatcatcgatttattctgttacagacattctattccttgaaatttacagaatttcaaaa	26412021	T

Q	107	tgatcctggaaattataaattcttgattacattagttcttttaggtcagtcaatttagtccatgaaaatgttccaaaggggctaatgtggttagaatttc	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26412022	tgatcctggaaattatcaattcttgattacattagttcttttaggtcagtcaatttagtccatgaaaatgttccaaaggggctaatgtggttagaatttc	26412121	T

Q	207	tacttttaaaaattattttgaaatttcgttcatttcag	244	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26412122	tacttttaaaaattattttgaaatttcgttcatttcag	26412159	T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 129 - 175

Target Start/End: Original strand, 27632563 - 27632609

Alignment:

Q	129	ttgattacattagttcttttaggtcagtcaatttagtccatgaaaat	175	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	27632563	ttgattatattagttcttttagatcggtcaatttagtccttgaaaat	27632609	T

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