View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_398 (Length: 250)
Name: NF10145A_low_398
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_398 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 35214452 - 35214687
Alignment:
| Q |
8 |
gacatcatcagaatcggcggcaaatcgaaaaatcttagataggatggagaatctatcaacgtcaatcggagtcgtgcgagaaagtatggtggcaatacac |
107 |
Q |
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| T |
35214452 |
gacatcatcagaatcggcggcaaatcgaaaaatcttagaaaggacggagaatctaccaacgtcaatcggagtcgtgcgagaaagtatggtggcaatacac |
35214551 |
T |
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| Q |
108 |
ccttcaggcaattcatcaaaccttgtcattctttgctctttacgatgaagtttaagaatactatatgattgttgtattggagggtttatatgtttgtatg |
207 |
Q |
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| T |
35214552 |
ccttcaggcaattcatcaaaccttgtcattctttgctctttacgatgaagtttaagaatactatatgattgttgtattggagggtttatatgattgtatg |
35214651 |
T |
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| Q |
208 |
cggtagaaggctatggcgggggactgatattattgg |
243 |
Q |
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| T |
35214652 |
cggtagaaggctatggcgggggactgatattgttgg |
35214687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 35207246 - 35207380
Alignment:
| Q |
8 |
gacatcatcagaatcggcggcaaatcgaaaaatcttagataggatggagaatctatcaacgtcaatcggagtcgtgcgagaaagtatggtggcaatacac |
107 |
Q |
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| T |
35207246 |
gacatcatcagaatcggcggcagatcaaaaaatcttagaaaggatggagaatctttcaacatctatcggagtcgtgcgagagagtatggtgacaatacac |
35207345 |
T |
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| Q |
108 |
ccttcaggcaattcatcaaaccttgtcattctttg |
142 |
Q |
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| T |
35207346 |
tcttcaggcaattcttcaaaacgtgtcattttttg |
35207380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 35146096 - 35145963
Alignment:
| Q |
8 |
gacatcatcagaatcggcggcaaatcgaaaaatcttagataggatggagaatctatcaacgtcaatcggagtcgtgcgagaaagtatggtggcaatacac |
107 |
Q |
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| T |
35146096 |
gacatcatcagaatcggcggcagatcgaaaagtcttagaatggacggagaatccaccaatgtcaatcggagtcgtgcgagagtgtatggtggcgatacac |
35145997 |
T |
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| Q |
108 |
ccttcaggcaattcatcaaaccttgtcattcttt |
141 |
Q |
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| T |
35145996 |
ccttcagacaattcttcaaaacttttcattcttt |
35145963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 35145845 - 35145964
Alignment:
| Q |
9 |
acatcatcagaatcggcggcaaatcgaaaaa-tcttagataggatggagaatctatcaacgtcaatcggagtcgtgcgagaaagtatggtggcaatacac |
107 |
Q |
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| T |
35145845 |
acatcatcagaatcggcggcagatcgaaaaagtcttagaaaggacgaagaatctgccaacgtcaatcagattcgtgggagagagtatggcggcaatacac |
35145944 |
T |
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| Q |
108 |
ccttcaggcaattcatcaaa |
127 |
Q |
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| T |
35145945 |
ccttcaggcaattcttcaaa |
35145964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 35249985 - 35250037
Alignment:
| Q |
75 |
ggagtcgtgcgagaaagtatggtggcaatacacccttcaggcaattcatcaaa |
127 |
Q |
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| T |
35249985 |
ggagtcgttcgagagagtatggcggcaatgcactcttccggcaattcatcaaa |
35250037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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