View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_40 (Length: 426)
Name: NF10145A_low_40
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 6 - 421
Target Start/End: Complemental strand, 41357546 - 41357123
Alignment:
| Q |
6 |
atgggaaaagtaagcacagacacagaaaatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttgtgaaaatatct |
105 |
Q |
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| T |
41357546 |
atgggaaaagtaagcacagacacagaaaatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttgtgaaaatatct |
41357447 |
T |
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| Q |
106 |
aaagatctctatagcatagcatgatgcttcatatgtcattcat--------catacgatgttaaataagcacatagctagaatgtaaacaattgaacaac |
197 |
Q |
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| T |
41357446 |
aaagatctctatagcatagcatgatgcttcatatgtcattcattcattcatcatatgatgttaaataagcacatagctagaatgtaaacaattgaacaac |
41357347 |
T |
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| Q |
198 |
gcaaactaacctctagaaatgtcaatgtggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgtaatcagataaa |
297 |
Q |
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| T |
41357346 |
gcaaactaacctctagaaatgtcaatgtggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgtaatcagataaa |
41357247 |
T |
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| Q |
298 |
caagaatctccattagtttgaattaatattttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgctataactccgcta |
397 |
Q |
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| T |
41357246 |
caagaatctccattagtttgaattaatattttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgctataactccgcta |
41357147 |
T |
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| Q |
398 |
taccgctatttgacgccactttgt |
421 |
Q |
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| T |
41357146 |
taccgctatttgacgccactttgt |
41357123 |
T |
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